{"id":"https://openalex.org/W2141865968","doi":"https://doi.org/10.1186/s13015-015-0032-x","title":"Estimating evolutionary distances between genomic sequences from spaced-word matches","display_name":"Estimating evolutionary distances between genomic sequences from spaced-word matches","publication_year":2015,"publication_date":"2015-02-10","ids":{"openalex":"https://openalex.org/W2141865968","doi":"https://doi.org/10.1186/s13015-015-0032-x","mag":"2141865968","pmid":"https://pubmed.ncbi.nlm.nih.gov/25685176"},"language":"en","primary_location":{"id":"doi:10.1186/s13015-015-0032-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13015-015-0032-x","pdf_url":"https://almob.biomedcentral.com/counter/pdf/10.1186/s13015-015-0032-x","source":{"id":"https://openalex.org/S205663195","display_name":"Algorithms for Molecular Biology","issn_l":"1748-7188","issn":["1748-7188"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms for Molecular Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://almob.biomedcentral.com/counter/pdf/10.1186/s13015-015-0032-x","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5024220352","display_name":"Burkhard Morgenstern","orcid":"https://orcid.org/0000-0002-7431-2862"},"institutions":[{"id":"https://openalex.org/I74656192","display_name":"University of G\u00f6ttingen","ror":"https://ror.org/01y9bpm73","country_code":"DE","type":"education","lineage":["https://openalex.org/I74656192"]},{"id":"https://openalex.org/I88467170","display_name":"Universit\u00e9 d'\u00c9vry Val-d'Essonne","ror":"https://ror.org/00e96v939","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954","https://openalex.org/I88467170"]}],"countries":["DE","FR"],"is_corresponding":true,"raw_author_name":"Burkhard Morgenstern","raw_affiliation_strings":["University of G\u00f6ttingen, Department of Bioinformatics, Goldschmidtstr. 1, G\u00f6ttingen, 37073 Germany ; Universit\u00e9 d'Evry Val d'Essonne, Laboratoire Statistique et G\u00e9nome, UMR CNRS 8071, USC INRA 23 Boulevard de France, Evry, 91037 France","University of G\u00f6ttingen, Department of Bioinformatics, G\u00f6ttingen, Germany","Universit\u00e9 d\u2019Evry Val d\u2019Essonne, Laboratoire Statistique et G\u00e9nome, Evry, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of G\u00f6ttingen, Department of Bioinformatics, Goldschmidtstr. 1, G\u00f6ttingen, 37073 Germany ; Universit\u00e9 d'Evry Val d'Essonne, Laboratoire Statistique et G\u00e9nome, UMR CNRS 8071, USC INRA 23 Boulevard de France, Evry, 91037 France","institution_ids":[]},{"raw_affiliation_string":"University of G\u00f6ttingen, Department of Bioinformatics, G\u00f6ttingen, Germany","institution_ids":["https://openalex.org/I74656192"]},{"raw_affiliation_string":"Universit\u00e9 d\u2019Evry Val d\u2019Essonne, Laboratoire Statistique et G\u00e9nome, Evry, France","institution_ids":["https://openalex.org/I88467170"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069458414","display_name":"Bingyao Zhu","orcid":null},"institutions":[{"id":"https://openalex.org/I74656192","display_name":"University of G\u00f6ttingen","ror":"https://ror.org/01y9bpm73","country_code":"DE","type":"education","lineage":["https://openalex.org/I74656192"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Bingyao Zhu","raw_affiliation_strings":["University of G\u00f6ttingen, Department of General Microbiology, Grisebachstr. 8, G\u00f6ttingen, 37073 Germany","University of G\u00f6ttingen, Department of General Microbiology, G\u00f6ttingen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of G\u00f6ttingen, Department of General Microbiology, Grisebachstr. 8, G\u00f6ttingen, 37073 Germany","institution_ids":[]},{"raw_affiliation_string":"University of G\u00f6ttingen, Department of General Microbiology, G\u00f6ttingen, Germany","institution_ids":["https://openalex.org/I74656192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091074959","display_name":"Sebastian Horwege","orcid":null},"institutions":[{"id":"https://openalex.org/I74656192","display_name":"University of G\u00f6ttingen","ror":"https://ror.org/01y9bpm73","country_code":"DE","type":"education","lineage":["https://openalex.org/I74656192"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Sebastian Horwege","raw_affiliation_strings":["University of G\u00f6ttingen, Department of Bioinformatics, Goldschmidtstr. 1, G\u00f6ttingen, 37073 Germany","University of G\u00f6ttingen, Department of Bioinformatics, G\u00f6ttingen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of G\u00f6ttingen, Department of Bioinformatics, Goldschmidtstr. 1, G\u00f6ttingen, 37073 Germany","institution_ids":[]},{"raw_affiliation_string":"University of G\u00f6ttingen, Department of Bioinformatics, G\u00f6ttingen, Germany","institution_ids":["https://openalex.org/I74656192"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5018121198","display_name":"Chris Andr\u00e9 Leimeister","orcid":null},"institutions":[{"id":"https://openalex.org/I74656192","display_name":"University of G\u00f6ttingen","ror":"https://ror.org/01y9bpm73","country_code":"DE","type":"education","lineage":["https://openalex.org/I74656192"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Chris Andr\u00e9 Leimeister","raw_affiliation_strings":["University of G\u00f6ttingen, Department of Bioinformatics, Goldschmidtstr. 1, G\u00f6ttingen, 37073 Germany","University of G\u00f6ttingen, Department of Bioinformatics, G\u00f6ttingen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of G\u00f6ttingen, Department of Bioinformatics, Goldschmidtstr. 1, G\u00f6ttingen, 37073 Germany","institution_ids":[]},{"raw_affiliation_string":"University of G\u00f6ttingen, Department of Bioinformatics, G\u00f6ttingen, Germany","institution_ids":["https://openalex.org/I74656192"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5024220352"],"corresponding_institution_ids":["https://openalex.org/I74656192","https://openalex.org/I88467170"],"apc_list":{"value":1490,"currency":"GBP","value_usd":1827},"apc_paid":{"value":1408,"currency":"EUR","value_usd":1518},"fwci":3.1623,"has_fulltext":true,"cited_by_count":65,"citation_normalized_percentile":{"value":0.9230487,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"10","issue":"1","first_page":"5","last_page":"5"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.9891999959945679,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/word","display_name":"Word (group theory)","score":0.6509029269218445},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6016781330108643},{"id":"https://openalex.org/keywords/variance","display_name":"Variance (accounting)","score":0.5626947283744812},{"id":"https://openalex.org/keywords/estimator","display_name":"Estimator","score":0.5617886781692505},{"id":"https://openalex.org/keywords/heuristic","display_name":"Heuristic","score":0.5517933368682861},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.4807967245578766},{"id":"https://openalex.org/keywords/simple","display_name":"Simple (philosophy)","score":0.45552974939346313},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.45389649271965027},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3418691158294678},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3227992653846741},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.3120229244232178},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.2699793875217438},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1815676987171173},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.1682281494140625}],"concepts":[{"id":"https://openalex.org/C90805587","wikidata":"https://www.wikidata.org/wiki/Q10944557","display_name":"Word (group theory)","level":2,"score":0.6509029269218445},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6016781330108643},{"id":"https://openalex.org/C196083921","wikidata":"https://www.wikidata.org/wiki/Q7915758","display_name":"Variance (accounting)","level":2,"score":0.5626947283744812},{"id":"https://openalex.org/C185429906","wikidata":"https://www.wikidata.org/wiki/Q1130160","display_name":"Estimator","level":2,"score":0.5617886781692505},{"id":"https://openalex.org/C173801870","wikidata":"https://www.wikidata.org/wiki/Q201413","display_name":"Heuristic","level":2,"score":0.5517933368682861},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4807967245578766},{"id":"https://openalex.org/C2780586882","wikidata":"https://www.wikidata.org/wiki/Q7520643","display_name":"Simple (philosophy)","level":2,"score":0.45552974939346313},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.45389649271965027},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3418691158294678},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3227992653846741},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.3120229244232178},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.2699793875217438},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1815676987171173},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.1682281494140625},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C121955636","wikidata":"https://www.wikidata.org/wiki/Q4116214","display_name":"Accounting","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[],"locations_count":6,"locations":[{"id":"doi:10.1186/s13015-015-0032-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13015-015-0032-x","pdf_url":"https://almob.biomedcentral.com/counter/pdf/10.1186/s13015-015-0032-x","source":{"id":"https://openalex.org/S205663195","display_name":"Algorithms for Molecular Biology","issn_l":"1748-7188","issn":["1748-7188"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms for Molecular Biology","raw_type":"journal-article"},{"id":"pmid:25685176","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25685176","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms for molecular biology : AMB","raw_type":null},{"id":"pmh:oai:HAL:hal-02637625v1","is_oa":false,"landing_page_url":"https://hal.inrae.fr/hal-02637625","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.almob.org/","raw_type":"Journal articles"},{"id":"pmh:oai:europepmc.org:3293170","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4327811","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:goescholar:1/13463","is_oa":true,"landing_page_url":"http://resolver.sub.uni-goettingen.de/purl?gs-1/13463","pdf_url":null,"source":{"id":"https://openalex.org/S4306401634","display_name":"GoeScholar  The Publication Server of the Georg-August-Universit\u00e4t G\u00f6ttingen (Georg-August-Universit\u00e4t G\u00f6ttingen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210122495","host_organization_name":"Asklepios Klinik St. Georg","host_organization_lineage":["https://openalex.org/I4210122495"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"journalArticle"},{"id":"pmh:oai:publications.goettingen-research-online.de:2/37917","is_oa":true,"landing_page_url":"https://resolver.sub.uni-goettingen.de/purl?gs-1/13463","pdf_url":null,"source":{"id":"https://openalex.org/S4306401634","display_name":"GoeScholar  The Publication Server of the Georg-August-Universit\u00e4t G\u00f6ttingen (Georg-August-Universit\u00e4t G\u00f6ttingen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210122495","host_organization_name":"Asklepios Klinik St. Georg","host_organization_lineage":["https://openalex.org/I4210122495"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"journal_article"}],"best_oa_location":{"id":"doi:10.1186/s13015-015-0032-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13015-015-0032-x","pdf_url":"https://almob.biomedcentral.com/counter/pdf/10.1186/s13015-015-0032-x","source":{"id":"https://openalex.org/S205663195","display_name":"Algorithms for Molecular Biology","issn_l":"1748-7188","issn":["1748-7188"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms for Molecular Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2141865968.pdf","grobid_xml":"https://content.openalex.org/works/W2141865968.grobid-xml"},"referenced_works_count":59,"referenced_works":["https://openalex.org/W122755023","https://openalex.org/W1508740138","https://openalex.org/W1525734744","https://openalex.org/W1539550196","https://openalex.org/W1546639740","https://openalex.org/W1562379206","https://openalex.org/W1570643690","https://openalex.org/W1614203862","https://openalex.org/W1707586213","https://openalex.org/W1968363797","https://openalex.org/W1971239653","https://openalex.org/W1973518241","https://openalex.org/W1975775747","https://openalex.org/W1986908504","https://openalex.org/W1988581590","https://openalex.org/W1997673861","https://openalex.org/W2006075770","https://openalex.org/W2010473599","https://openalex.org/W2011782760","https://openalex.org/W2013887116","https://openalex.org/W2014960974","https://openalex.org/W2020816856","https://openalex.org/W2039491180","https://openalex.org/W2050946340","https://openalex.org/W2057527458","https://openalex.org/W2060425093","https://openalex.org/W2065128082","https://openalex.org/W2074744620","https://openalex.org/W2091134657","https://openalex.org/W2097706568","https://openalex.org/W2099401974","https://openalex.org/W2103156298","https://openalex.org/W2108079689","https://openalex.org/W2111676148","https://openalex.org/W2112815320","https://openalex.org/W2119305840","https://openalex.org/W2119488386","https://openalex.org/W2120771433","https://openalex.org/W2123006317","https://openalex.org/W2124626190","https://openalex.org/W2124985265","https://openalex.org/W2128591967","https://openalex.org/W2138486754","https://openalex.org/W2139760555","https://openalex.org/W2143593035","https://openalex.org/W2146950091","https://openalex.org/W2149792928","https://openalex.org/W2150208009","https://openalex.org/W2150774511","https://openalex.org/W2155563453","https://openalex.org/W2158727584","https://openalex.org/W2160969485","https://openalex.org/W2162210683","https://openalex.org/W2166162901","https://openalex.org/W2970344678","https://openalex.org/W3123195831","https://openalex.org/W3154566661","https://openalex.org/W3199943451","https://openalex.org/W4390808053"],"related_works":["https://openalex.org/W1585007175","https://openalex.org/W4287880334","https://openalex.org/W2382521049","https://openalex.org/W2144385241","https://openalex.org/W2801210103","https://openalex.org/W3122602933","https://openalex.org/W2950038056","https://openalex.org/W1544940847","https://openalex.org/W2289285490","https://openalex.org/W2411867243"],"abstract_inverted_index":{"Alignment-free":[0],"methods":[1],"are":[2,30,83],"increasingly":[3],"used":[4,84,131],"to":[5],"calculate":[6,91],"evolutionary":[7,50],"distances":[8],"between":[9,52,67],"DNA":[10,54],"and":[11,119,138,147],"protein":[12],"sequences":[13,55],"as":[14,148],"a":[15,43],"basis":[16],"of":[17,21,37,48,63,94,99,108,135],"phylogeny":[18],"reconstruction.":[19],"Most":[20],"these":[22],"methods,":[23],"however,":[24],"use":[25],"heuristic":[26],"distance":[27,51,73,80],"functions":[28],"that":[29,56,71,82,105,120],"not":[31],"based":[32],"on":[33],"any":[34],"explicit":[35],"model":[36],"molecular":[38],"evolution.":[39],"Herein,":[40],"we":[41,90],"propose":[42],"simple":[44],"estimator":[45],"d":[46],"N":[47,62,98,109],"the":[49,60,92,95,106,121],"two":[53],"is":[57,75,110,123,130,144],"calculated":[58],"from":[59],"number":[61,97],"(spaced)":[64,100],"word":[65,101],"matches":[66],"them.":[68],"We":[69,103],"show":[70,104],"this":[72],"function":[74],"more":[76],"accurate":[77],"than":[78,115],"other":[79],"measures":[81],"by":[85],"alignment-free":[86],"methods.":[87],"In":[88],"addition,":[89],"variance":[93,107,122],"normalized":[96],"matches.":[102],"smaller":[111],"for":[112,116],"spaced":[113],"words":[114],"contiguous":[117],"words,":[118],"further":[124],"reduced":[125],"if":[126],"our":[127],"spaced-words":[128],"approach":[129],"with":[132],"multiple":[133],"patterns":[134],"'match":[136],"positions'":[137],"'don't":[139],"care":[140],"positions'.":[141],"Our":[142],"software":[143],"available":[145],"online":[146],"downloadable":[149],"source":[150],"code":[151],"at:":[152],"http://spaced.gobics.de/.":[153]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":12},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":13},{"year":2018,"cited_by_count":9},{"year":2017,"cited_by_count":6},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":1}],"updated_date":"2026-05-07T13:39:58.223016","created_date":"2025-10-10T00:00:00"}
