{"id":"https://openalex.org/W2152202044","doi":"https://doi.org/10.1186/s13015-014-0021-5","title":"Optimal computation of all tandem repeats in a weighted sequence","display_name":"Optimal computation of all tandem repeats in a weighted sequence","publication_year":2014,"publication_date":"2014-01-01","ids":{"openalex":"https://openalex.org/W2152202044","doi":"https://doi.org/10.1186/s13015-014-0021-5","mag":"2152202044","pmid":"https://pubmed.ncbi.nlm.nih.gov/25221616"},"language":"en","primary_location":{"id":"doi:10.1186/s13015-014-0021-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13015-014-0021-5","pdf_url":"https://almob.biomedcentral.com/counter/pdf/10.1186/s13015-014-0021-5","source":{"id":"https://openalex.org/S205663195","display_name":"Algorithms for Molecular Biology","issn_l":"1748-7188","issn":["1748-7188"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms for Molecular Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://almob.biomedcentral.com/counter/pdf/10.1186/s13015-014-0021-5","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102952570","display_name":"Carl Barton","orcid":"https://orcid.org/0000-0003-1589-0432"},"institutions":[{"id":"https://openalex.org/I183935753","display_name":"King's College London","ror":"https://ror.org/0220mzb33","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I183935753"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Carl Barton","raw_affiliation_strings":["King's College London, London, UK"],"affiliations":[{"raw_affiliation_string":"King's College London, London, UK","institution_ids":["https://openalex.org/I183935753"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058155947","display_name":"Costas S. Iliopoulos","orcid":"https://orcid.org/0000-0003-3909-0077"},"institutions":[{"id":"https://openalex.org/I183935753","display_name":"King's College London","ror":"https://ror.org/0220mzb33","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I183935753"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Costas S Iliopoulos","raw_affiliation_strings":["King's College London, London, UK ; University of Western Australia, Crawley, Australia ; Curtin University, Bentley, Australia","King's College London, London, UK"],"affiliations":[{"raw_affiliation_string":"King's College London, London, UK ; University of Western Australia, Crawley, Australia ; Curtin University, Bentley, Australia","institution_ids":[]},{"raw_affiliation_string":"King's College London, London, UK","institution_ids":["https://openalex.org/I183935753"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5051275317","display_name":"Solon P. Pissis","orcid":"https://orcid.org/0000-0002-1445-1932"},"institutions":[{"id":"https://openalex.org/I183935753","display_name":"King's College London","ror":"https://ror.org/0220mzb33","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I183935753"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Solon P Pissis","raw_affiliation_strings":["King's College London, London, UK"],"affiliations":[{"raw_affiliation_string":"King's College London, London, UK","institution_ids":["https://openalex.org/I183935753"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5102952570"],"corresponding_institution_ids":["https://openalex.org/I183935753"],"apc_list":{"value":1490,"currency":"GBP","value_usd":1827},"apc_paid":{"value":1490,"currency":"GBP","value_usd":1827},"fwci":3.3829,"has_fulltext":true,"cited_by_count":12,"citation_normalized_percentile":{"value":0.93333436,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"9","issue":"1","first_page":"21","last_page":"21"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/tandem-repeat","display_name":"Tandem repeat","score":0.776199460029602},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.7051844596862793},{"id":"https://openalex.org/keywords/string","display_name":"String (physics)","score":0.6911453008651733},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5869432687759399},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.5472211837768555},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5065516233444214},{"id":"https://openalex.org/keywords/edit-distance","display_name":"Edit distance","score":0.499575138092041},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4780864417552948},{"id":"https://openalex.org/keywords/computation","display_name":"Computation","score":0.4547596871852875},{"id":"https://openalex.org/keywords/tandem","display_name":"Tandem","score":0.4253215193748474},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.2833942770957947},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.18220004439353943},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.16645348072052002},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.13448914885520935}],"concepts":[{"id":"https://openalex.org/C27149982","wikidata":"https://www.wikidata.org/wiki/Q3456514","display_name":"Tandem repeat","level":4,"score":0.776199460029602},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.7051844596862793},{"id":"https://openalex.org/C157486923","wikidata":"https://www.wikidata.org/wiki/Q1376436","display_name":"String (physics)","level":2,"score":0.6911453008651733},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5869432687759399},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.5472211837768555},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5065516233444214},{"id":"https://openalex.org/C44359876","wikidata":"https://www.wikidata.org/wiki/Q5338467","display_name":"Edit distance","level":2,"score":0.499575138092041},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4780864417552948},{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.4547596871852875},{"id":"https://openalex.org/C2777814067","wikidata":"https://www.wikidata.org/wiki/Q1752317","display_name":"Tandem","level":2,"score":0.4253215193748474},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2833942770957947},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.18220004439353943},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.16645348072052002},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.13448914885520935},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C37914503","wikidata":"https://www.wikidata.org/wiki/Q156495","display_name":"Mathematical physics","level":1,"score":0.0},{"id":"https://openalex.org/C159985019","wikidata":"https://www.wikidata.org/wiki/Q181790","display_name":"Composite material","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":6,"locations":[{"id":"doi:10.1186/s13015-014-0021-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13015-014-0021-5","pdf_url":"https://almob.biomedcentral.com/counter/pdf/10.1186/s13015-014-0021-5","source":{"id":"https://openalex.org/S205663195","display_name":"Algorithms for Molecular Biology","issn_l":"1748-7188","issn":["1748-7188"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms for Molecular Biology","raw_type":"journal-article"},{"id":"pmid:25221616","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25221616","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms for molecular biology : AMB","raw_type":null},{"id":"pmh:oai:kclpure.kcl.ac.uk:openaire/822768b1-6400-4af7-bc71-114bd7f0ccaa","is_oa":true,"landing_page_url":"https://kclpure.kcl.ac.uk/portal/en/publications/822768b1-6400-4af7-bc71-114bd7f0ccaa","pdf_url":null,"source":{"id":"https://openalex.org/S4306400216","display_name":"Research Portal (King's College London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I183935753","host_organization_name":"King's College London","host_organization_lineage":["https://openalex.org/I183935753"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Barton, C, Iliopoulos, C S & Pissis, S P 2014, 'Optimal computation of all tandem repeats in a weighted sequence', Algorithms for Molecular Biology, vol. 9, 21. https://doi.org/10.1186/s13015-014-0021-5","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pure.atira.dk:openaire/57a638ed-0f2e-44fa-85d0-c4e69bf3c0d6","is_oa":true,"landing_page_url":"https://admin.research-repository.uwa.edu.au/en/publications/57a638ed-0f2e-44fa-85d0-c4e69bf3c0d6","pdf_url":null,"source":{"id":"https://openalex.org/S4306402492","display_name":"UWA Profiles and Research Repository (UWA)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I177877127","host_organization_name":"The University of Western Australia","host_organization_lineage":["https://openalex.org/I177877127"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Barton, C, Iliopoulos, C & Pissis, S P 2014, 'Optimal computation of all tandem repeats in a weighted sequence', Algorithms for Molecular Biology, vol. 9, no. 1, pp. 1-10. https://doi.org/10.1186/s13015-014-0021-5","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pure.atira.dk:publications/57a638ed-0f2e-44fa-85d0-c4e69bf3c0d6","is_oa":true,"landing_page_url":"https://research-repository.uwa.edu.au/en/publications/57a638ed-0f2e-44fa-85d0-c4e69bf3c0d6","pdf_url":null,"source":{"id":"https://openalex.org/S4306402523","display_name":"UWA Profiles and Research Repository (University of Western Australia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I177877127","host_organization_name":"The University of Western Australia","host_organization_lineage":["https://openalex.org/I177877127"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Barton , C , Iliopoulos , C &amp; Pissis , S P 2014 , ' Optimal computation of all tandem repeats in a weighted sequence ' , Algorithms for Molecular Biology , vol. 9 , no. 1 , pp. 1-10 . https://doi.org/10.1186/s13015-014-0021-5","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:4152798","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4152798","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Algorithms Mol Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s13015-014-0021-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13015-014-0021-5","pdf_url":"https://almob.biomedcentral.com/counter/pdf/10.1186/s13015-014-0021-5","source":{"id":"https://openalex.org/S205663195","display_name":"Algorithms for Molecular Biology","issn_l":"1748-7188","issn":["1748-7188"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms for Molecular Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4515810461","display_name":"DTA - King's College London","funder_award_id":"EP/J500252/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G7152236099","display_name":null,"funder_award_id":"#EP/J500252/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G7668322710","display_name":null,"funder_award_id":"Doctoral Training Grant","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320320285","display_name":"King's College London","ror":"https://ror.org/0220mzb33"},{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2152202044.pdf","grobid_xml":"https://content.openalex.org/works/W2152202044.grobid-xml"},"referenced_works_count":21,"referenced_works":["https://openalex.org/W79843929","https://openalex.org/W1504417041","https://openalex.org/W1540916738","https://openalex.org/W1855864163","https://openalex.org/W1882010690","https://openalex.org/W1973272213","https://openalex.org/W1983835960","https://openalex.org/W1992151876","https://openalex.org/W2039752257","https://openalex.org/W2050712839","https://openalex.org/W2065711088","https://openalex.org/W2067787802","https://openalex.org/W2112814753","https://openalex.org/W2123546399","https://openalex.org/W2125913695","https://openalex.org/W2130396264","https://openalex.org/W2152202044","https://openalex.org/W2292103884","https://openalex.org/W2764410856","https://openalex.org/W4231108571","https://openalex.org/W4254652536"],"related_works":["https://openalex.org/W2011632873","https://openalex.org/W2097126513","https://openalex.org/W27868847","https://openalex.org/W1975616635","https://openalex.org/W2129645087","https://openalex.org/W1967382114","https://openalex.org/W3037506964","https://openalex.org/W2337746918","https://openalex.org/W2476683972","https://openalex.org/W2152202044"],"abstract_inverted_index":{"Crochemore's":[0,7,42],"repetitions":[1,26,72],"algorithm,":[2,9],"also":[3],"referred":[4],"to":[5,23],"as":[6],"partitioning":[8,43],"was":[10,15],"introduced":[11],"in":[12,27,73],"1981,":[13],"and":[14],"the":[16,58],"first":[17],"optimal":[18,50],"[Formula:":[19,51,61],"see":[20,52,62],"text]-time":[21,63],"algorithm":[22,44,64],"compute":[24],"all":[25,71],"a":[28,38,74],"string":[29],"of":[30,41,77],"length":[31,78],"n.":[32,79],"In":[33],"this":[34],"article,":[35],"we":[36],"present":[37],"novel":[39],"variant":[40],"for":[45,69],"weighted":[46,75],"sequences,":[47],"which":[48],"requires":[49],"text]":[53],"time,":[54],"thus":[55],"improving":[56],"on":[57],"best":[59],"known":[60],"(Zhang":[65],"et":[66],"al.,":[67],"2013)":[68],"computing":[70],"sequence":[76]},"counts_by_year":[{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":1}],"updated_date":"2026-04-12T07:58:50.170612","created_date":"2025-10-10T00:00:00"}
