{"id":"https://openalex.org/W2901969391","doi":"https://doi.org/10.1186/s12918-018-0612-8","title":"BLASSO: integration of biological knowledge into a regularized linear model","display_name":"BLASSO: integration of biological knowledge into a regularized linear model","publication_year":2018,"publication_date":"2018-11-01","ids":{"openalex":"https://openalex.org/W2901969391","doi":"https://doi.org/10.1186/s12918-018-0612-8","mag":"2901969391","pmid":"https://pubmed.ncbi.nlm.nih.gov/30458775"},"language":"en","primary_location":{"id":"doi:10.1186/s12918-018-0612-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12918-018-0612-8","pdf_url":"https://bmcsystbiol.biomedcentral.com/track/pdf/10.1186/s12918-018-0612-8","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcsystbiol.biomedcentral.com/track/pdf/10.1186/s12918-018-0612-8","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5037345774","display_name":"Daniel Urda","orcid":"https://orcid.org/0000-0003-2662-798X"},"institutions":[{"id":"https://openalex.org/I39147953","display_name":"Universidad de C\u00e1diz","ror":"https://ror.org/04mxxkb11","country_code":"ES","type":"education","lineage":["https://openalex.org/I39147953"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Daniel Urda","raw_affiliation_strings":["Universidad de C\u00e1diz, Departamento de Ingenier\u00eda Inform\u00e1tica, Avda. de la Universidad de C\u00e1diz n\u00b010, Puerto Real, C\u00e1diz, 11519, Spain. daniel.urda@uca.es","Universidad de C\u00e1diz, Departamento de Ingenier\u00eda Inform\u00e1tica, Avda. de la Universidad de C\u00e1diz n\u00b010, Puerto Real, C\u00e1diz, 11519, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Universidad de C\u00e1diz, Departamento de Ingenier\u00eda Inform\u00e1tica, Avda. de la Universidad de C\u00e1diz n\u00b010, Puerto Real, C\u00e1diz, 11519, Spain. daniel.urda@uca.es","institution_ids":["https://openalex.org/I39147953"]},{"raw_affiliation_string":"Universidad de C\u00e1diz, Departamento de Ingenier\u00eda Inform\u00e1tica, Avda. de la Universidad de C\u00e1diz n\u00b010, Puerto Real, C\u00e1diz, 11519, Spain","institution_ids":["https://openalex.org/I39147953"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035837360","display_name":"Francisco Arag\u00f3n","orcid":null},"institutions":[{"id":"https://openalex.org/I82767444","display_name":"Universidad de M\u00e1laga","ror":"https://ror.org/036b2ww28","country_code":"ES","type":"education","lineage":["https://openalex.org/I82767444"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Francisco Arag\u00f3n","raw_affiliation_strings":["Universidad de M\u00e1laga, Departamento de Lenguajes y Ciencias de la Computaci\u00f3n, Bulevar Louis Pasteur, 35. Campus de Teatinos, M\u00e1laga, 29071, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Universidad de M\u00e1laga, Departamento de Lenguajes y Ciencias de la Computaci\u00f3n, Bulevar Louis Pasteur, 35. Campus de Teatinos, M\u00e1laga, 29071, Spain","institution_ids":["https://openalex.org/I82767444"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074979435","display_name":"Roc\u00ed\u00ado Bautista","orcid":"https://orcid.org/0000-0003-1685-8119"},"institutions":[{"id":"https://openalex.org/I82767444","display_name":"Universidad de M\u00e1laga","ror":"https://ror.org/036b2ww28","country_code":"ES","type":"education","lineage":["https://openalex.org/I82767444"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Roc\u00edo Bautista","raw_affiliation_strings":["Universidad de M\u00e1laga, Plataforma Andaluza de Bioinform\u00e1tica, Parque Tecnol\u00f3gico de Andaluc\u00eda, Calle Severo Ochoa 34, M\u00e1laga, 29590, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Universidad de M\u00e1laga, Plataforma Andaluza de Bioinform\u00e1tica, Parque Tecnol\u00f3gico de Andaluc\u00eda, Calle Severo Ochoa 34, M\u00e1laga, 29590, Spain","institution_ids":["https://openalex.org/I82767444"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090072367","display_name":"Leonardo Franco","orcid":"https://orcid.org/0000-0003-0012-5914"},"institutions":[{"id":"https://openalex.org/I4210164724","display_name":"Instituto de Investigaci\u00f3n Biom\u00e9dica de M\u00e1laga","ror":"https://ror.org/05n3asa33","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210164724"]},{"id":"https://openalex.org/I82767444","display_name":"Universidad de M\u00e1laga","ror":"https://ror.org/036b2ww28","country_code":"ES","type":"education","lineage":["https://openalex.org/I82767444"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Leonardo Franco","raw_affiliation_strings":["Instituto de Investigaci\u00f3n Biom\u00e9dica de M\u00e1laga (IBIMA), Inteligencia Computacional en Biomedicina, Avda. Jorge Luis Borges n\u00b015 Bl.3 Pl.3, M\u00e1laga, 29010, Spain","Universidad de M\u00e1laga, Departamento de Lenguajes y Ciencias de la Computaci\u00f3n, Bulevar Louis Pasteur, 35. Campus de Teatinos, M\u00e1laga, 29071, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Instituto de Investigaci\u00f3n Biom\u00e9dica de M\u00e1laga (IBIMA), Inteligencia Computacional en Biomedicina, Avda. Jorge Luis Borges n\u00b015 Bl.3 Pl.3, M\u00e1laga, 29010, Spain","institution_ids":["https://openalex.org/I4210164724"]},{"raw_affiliation_string":"Universidad de M\u00e1laga, Departamento de Lenguajes y Ciencias de la Computaci\u00f3n, Bulevar Louis Pasteur, 35. Campus de Teatinos, M\u00e1laga, 29071, Spain","institution_ids":["https://openalex.org/I82767444"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067194140","display_name":"Francisco J. Veredas","orcid":"https://orcid.org/0000-0003-0739-2505"},"institutions":[{"id":"https://openalex.org/I4210164724","display_name":"Instituto de Investigaci\u00f3n Biom\u00e9dica de M\u00e1laga","ror":"https://ror.org/05n3asa33","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210164724"]},{"id":"https://openalex.org/I82767444","display_name":"Universidad de M\u00e1laga","ror":"https://ror.org/036b2ww28","country_code":"ES","type":"education","lineage":["https://openalex.org/I82767444"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Francisco J. Veredas","raw_affiliation_strings":["Instituto de Investigaci\u00f3n Biom\u00e9dica de M\u00e1laga (IBIMA), Inteligencia Computacional en Biomedicina, Avda. Jorge Luis Borges n\u00b015 Bl.3 Pl.3, M\u00e1laga, 29010, Spain","Universidad de M\u00e1laga, Departamento de Lenguajes y Ciencias de la Computaci\u00f3n, Bulevar Louis Pasteur, 35. Campus de Teatinos, M\u00e1laga, 29071, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Instituto de Investigaci\u00f3n Biom\u00e9dica de M\u00e1laga (IBIMA), Inteligencia Computacional en Biomedicina, Avda. Jorge Luis Borges n\u00b015 Bl.3 Pl.3, M\u00e1laga, 29010, Spain","institution_ids":["https://openalex.org/I4210164724"]},{"raw_affiliation_string":"Universidad de M\u00e1laga, Departamento de Lenguajes y Ciencias de la Computaci\u00f3n, Bulevar Louis Pasteur, 35. Campus de Teatinos, M\u00e1laga, 29071, Spain","institution_ids":["https://openalex.org/I82767444"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056017872","display_name":"M. Gonzalo Claros","orcid":"https://orcid.org/0000-0002-0112-3550"},"institutions":[{"id":"https://openalex.org/I82767444","display_name":"Universidad de M\u00e1laga","ror":"https://ror.org/036b2ww28","country_code":"ES","type":"education","lineage":["https://openalex.org/I82767444"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Manuel Gonzalo Claros","raw_affiliation_strings":["Universidad de M\u00e1laga, Departamento de Biolog\u00eda Molecular y Bioqu\u00edmica, Facultad de Ciencias, Campus Universitario de Teatinos, M\u00e1laga, 29071, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Universidad de M\u00e1laga, Departamento de Biolog\u00eda Molecular y Bioqu\u00edmica, Facultad de Ciencias, Campus Universitario de Teatinos, M\u00e1laga, 29071, Spain","institution_ids":["https://openalex.org/I82767444"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5009946045","display_name":"Jos\u00e9 M. Jerez","orcid":"https://orcid.org/0000-0002-7858-2966"},"institutions":[{"id":"https://openalex.org/I4210164724","display_name":"Instituto de Investigaci\u00f3n Biom\u00e9dica de M\u00e1laga","ror":"https://ror.org/05n3asa33","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210164724"]},{"id":"https://openalex.org/I82767444","display_name":"Universidad de M\u00e1laga","ror":"https://ror.org/036b2ww28","country_code":"ES","type":"education","lineage":["https://openalex.org/I82767444"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Jos\u00e9 Manuel Jerez","raw_affiliation_strings":["Instituto de Investigaci\u00f3n Biom\u00e9dica de M\u00e1laga (IBIMA), Inteligencia Computacional en Biomedicina, Avda. Jorge Luis Borges n\u00b015 Bl.3 Pl.3, M\u00e1laga, 29010, Spain","Universidad de M\u00e1laga, Departamento de Lenguajes y Ciencias de la Computaci\u00f3n, Bulevar Louis Pasteur, 35. Campus de Teatinos, M\u00e1laga, 29071, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Instituto de Investigaci\u00f3n Biom\u00e9dica de M\u00e1laga (IBIMA), Inteligencia Computacional en Biomedicina, Avda. Jorge Luis Borges n\u00b015 Bl.3 Pl.3, M\u00e1laga, 29010, Spain","institution_ids":["https://openalex.org/I4210164724"]},{"raw_affiliation_string":"Universidad de M\u00e1laga, Departamento de Lenguajes y Ciencias de la Computaci\u00f3n, Bulevar Louis Pasteur, 35. Campus de Teatinos, M\u00e1laga, 29071, Spain","institution_ids":["https://openalex.org/I82767444"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5037345774"],"corresponding_institution_ids":["https://openalex.org/I39147953"],"apc_list":{"value":2290,"currency":"USD","value_usd":2290},"apc_paid":{"value":2290,"currency":"USD","value_usd":2290},"fwci":0.3299,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":{"value":0.56976685,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"12","issue":"S5","first_page":"94","last_page":"94"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.5817000269889832,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.5817000269889832,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.09459999948740005,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10183","display_name":"Breast Cancer Treatment Studies","score":0.0568000003695488,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/lasso","display_name":"Lasso (programming language)","score":0.62030428647995},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5661497116088867},{"id":"https://openalex.org/keywords/linear-model","display_name":"Linear model","score":0.538449764251709},{"id":"https://openalex.org/keywords/robustness","display_name":"Robustness (evolution)","score":0.5163213610649109},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.49508967995643616},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.42085573077201843},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.412855863571167},{"id":"https://openalex.org/keywords/gene-expression-profiling","display_name":"Gene expression profiling","score":0.410400390625},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.33789190649986267},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3344627022743225},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.3055821657180786},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2733256220817566}],"concepts":[{"id":"https://openalex.org/C37616216","wikidata":"https://www.wikidata.org/wiki/Q3218363","display_name":"Lasso (programming language)","level":2,"score":0.62030428647995},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5661497116088867},{"id":"https://openalex.org/C163175372","wikidata":"https://www.wikidata.org/wiki/Q3339222","display_name":"Linear model","level":2,"score":0.538449764251709},{"id":"https://openalex.org/C63479239","wikidata":"https://www.wikidata.org/wiki/Q7353546","display_name":"Robustness (evolution)","level":3,"score":0.5163213610649109},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.49508967995643616},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.42085573077201843},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.412855863571167},{"id":"https://openalex.org/C18431079","wikidata":"https://www.wikidata.org/wiki/Q1502169","display_name":"Gene expression profiling","level":4,"score":0.410400390625},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.33789190649986267},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3344627022743225},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.3055821657180786},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2733256220817566},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016014","descriptor_name":"Linear Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016014","descriptor_name":"Linear Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016014","descriptor_name":"Linear Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1186/s12918-018-0612-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12918-018-0612-8","pdf_url":"https://bmcsystbiol.biomedcentral.com/track/pdf/10.1186/s12918-018-0612-8","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},{"id":"pmid:30458775","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30458775","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC systems biology","raw_type":null},{"id":"pmh:oai:riubu.ubu.es:10259/7263","is_oa":true,"landing_page_url":"http://hdl.handle.net/10259/7263","pdf_url":"https://riubu.ubu.es/bitstream/10259/7263/1/Urda-bmc_2018.pdf","source":{"id":"https://openalex.org/S4306400051","display_name":"Repositorio Institucional de la Universidad de Burgos (University of Burgos)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I46176106","host_organization_name":"Universidad de Burgos","host_organization_lineage":["https://openalex.org/I46176106"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/conferenceObject"},{"id":"pmh:oai:www.repositoriosalud.es:10668/13214","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6245593/pdf","pdf_url":null,"source":{"id":"https://openalex.org/S4377196114","display_name":"RISalud Institutional Health Repository of Andaluc\u00eda","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"research article"},{"id":"pmh:oai:dnet:ricscm______::68ddc37cdbddacd3c9a98bbdea4e0f2d","is_oa":true,"landing_page_url":"https://repositoriosaludmadrid.es/handle/20.500.12530/34752","pdf_url":null,"source":{"id":"https://openalex.org/S4306402641","display_name":"LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Cient\u00edficas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4383465926","host_organization_name":"LA Referencia","host_organization_lineage":["https://openalex.org/I4383465926"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:doaj.org/article:c249fe4dc2d84499993ced543bb82557","is_oa":false,"landing_page_url":"https://doaj.org/article/c249fe4dc2d84499993ced543bb82557","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Systems Biology, Vol 12, Iss S5, Pp 13-26 (2018)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:5218683","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6245593","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12918-018-0612-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12918-018-0612-8","pdf_url":"https://bmcsystbiol.biomedcentral.com/track/pdf/10.1186/s12918-018-0612-8","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.550000011920929}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2901969391.pdf","grobid_xml":"https://content.openalex.org/works/W2901969391.grobid-xml"},"referenced_works_count":38,"referenced_works":["https://openalex.org/W83593200","https://openalex.org/W814282759","https://openalex.org/W1494192115","https://openalex.org/W1517808374","https://openalex.org/W1565746575","https://openalex.org/W1577822803","https://openalex.org/W1958673254","https://openalex.org/W1964670939","https://openalex.org/W1984363873","https://openalex.org/W1988350080","https://openalex.org/W1999574084","https://openalex.org/W2020925091","https://openalex.org/W2022397091","https://openalex.org/W2033803508","https://openalex.org/W2036255459","https://openalex.org/W2058134062","https://openalex.org/W2066827579","https://openalex.org/W2067713319","https://openalex.org/W2091432990","https://openalex.org/W2097360283","https://openalex.org/W2119387367","https://openalex.org/W2119862467","https://openalex.org/W2123579157","https://openalex.org/W2126443908","https://openalex.org/W2128985829","https://openalex.org/W2131011986","https://openalex.org/W2135046866","https://openalex.org/W2153491803","https://openalex.org/W2163563958","https://openalex.org/W2167277498","https://openalex.org/W2328123809","https://openalex.org/W2503727350","https://openalex.org/W2560819412","https://openalex.org/W2593308633","https://openalex.org/W2741977902","https://openalex.org/W4245024447","https://openalex.org/W4294541781","https://openalex.org/W7001912067"],"related_works":["https://openalex.org/W2052655934","https://openalex.org/W104645380","https://openalex.org/W2027213253","https://openalex.org/W2017047508","https://openalex.org/W2804784031","https://openalex.org/W2165201120","https://openalex.org/W2023641020","https://openalex.org/W2188530857","https://openalex.org/W2133040682","https://openalex.org/W2296480322"],"abstract_inverted_index":{"In":[0,88],"RNA-Seq":[1,144],"gene":[2,53,145,283],"expression":[3,146],"analysis,":[4],"a":[5,13,22,95,142,163,171,271,290,306],"genetic":[6,39,82,155,221,263,329],"signature":[7,156,264],"or":[8,352],"biomarker":[9,139,316],"is":[10,18,41,160],"defined":[11],"as":[12,43,279,281,305],"subset":[14],"of":[15,37,48,66,114,153,187,208,219,231,241,246,274,312,327],"genes":[16,67,275,338,346],"that":[17,33,106,347],"probably":[19],"involved":[20],"in":[21,69,125,229,310,342,355],"given":[23,248],"complex":[24],"human":[25],"trait":[26],"and":[27,97,128,138,189,196,285,315],"usually":[28,72],"provide":[29],"predictive":[30,136,313],"capabilities":[31],"for":[32,148,157,181,193],"trait.":[34],"The":[35,151,236,257],"discovery":[36],"new":[38],"signatures":[40,83,222,330],"challenging,":[42],"it":[44],"entails":[45],"the":[46,64,81,112,154,158,194,197,205,212,217,220,226,232,262,267,328,356],"analysis":[47,259],"complex-nature":[49],"information":[50],"encoded":[51],"at":[52],"level.":[54],"Moreover,":[55],"biomarkers":[56],"selection":[57],"becomes":[58],"unstable,":[59],"since":[60],"high":[61],"correlation":[62],"among":[63],"thousands":[65],"included":[68],"each":[70],"sample":[71],"exists,":[73],"thus":[74,251],"obtaining":[75],"very":[76],"low":[77],"overlapping":[78],"rates":[79,203],"between":[80],"proposed":[84,132],"by":[85,162,249],"different":[86,119],"authors.":[87],"this":[89,91],"sense,":[90],"paper":[92],"proposes":[93],"BLASSO,":[94,126],"simple":[96],"highly":[98],"interpretable":[99],"linear":[100],"model":[101,159,228],"with":[102,170,178,211,266,277,299,332,339],"l":[103],"1":[104],"-regularization":[105],"incorporates":[107],"prior":[108],"biological":[109,123],"knowledge":[110,124],"to":[111,121,133,216,244,261,296,320],"prediction":[113],"breast":[115,149],"cancer":[116],"outcomes.":[117],"Two":[118],"approaches":[120],"integrate":[122],"Gene-specific":[127,195,237],"Gene-disease":[129,198,268],",":[130],"are":[131],"test":[134],"their":[135],"performance":[137],"stability":[140,218],"on":[141],"public":[143],"dataset":[147],"cancer.":[150,300],"relevance":[152],"inspected":[161],"functional":[164,258,325],"analysis.":[165],"BLASSO":[166,224,301,333],"has":[167,302,334],"been":[168,294,303],"compared":[169,243,319],"baseline":[172,227],"LASSO":[173],"model.":[174],"Using":[175],"10-fold":[176],"cross-validation":[177],"100":[179],"repetitions":[180],"models\u2019":[182],"assessment,":[183],"average":[184,206],"AUC":[185,207],"values":[186],"0.7":[188],"0.69":[190],"were":[191],"obtained":[192,210,265,331],"approaches,":[199],"respectively.":[200],"These":[201],"efficacy":[202,314],"outperform":[204],"0.65":[209],"LASSO.":[213],"With":[214],"respect":[215],"found,":[223],"outperformed":[225],"terms":[230,311],"robustness":[233],"index":[234],"(RI).":[235],"approach":[238,269],"gave":[239],"RI":[240,245],"0.15\u00b10.03,":[242],"0.09\u00b10.03":[247],"LASSO,":[250],"being":[252],"66%":[253],"times":[254],"more":[255],"robust.":[256],"performed":[260],"showed":[270],"significant":[272],"presence":[273],"related":[276,298],"cancer,":[278,343],"well":[280],"one":[282,286],"(IFNK)":[284],"pseudogene":[287],"(PCNAP1)":[288],"which":[289],"priori":[291],"had":[292],"not":[293,335],"described":[295],"be":[297],"shown":[304],"good":[307],"choice":[308],"both":[309],"stability,":[317],"when":[318],"other":[321],"similar":[322],"approaches.":[323],"Further":[324],"analyses":[326],"only":[336],"revealed":[337],"important":[340],"roles":[341],"but":[344],"also":[345],"should":[348],"play":[349],"an":[350],"unknown":[351],"collateral":[353],"role":[354],"studied":[357],"disease.":[358]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":1}],"updated_date":"2026-07-29T09:40:50.615796","created_date":"2025-10-10T00:00:00"}
