{"id":"https://openalex.org/W2798009828","doi":"https://doi.org/10.1186/s12918-018-0531-8","title":"KDiamend: a package for detecting key drivers in a molecular ecological network of disease","display_name":"KDiamend: a package for detecting key drivers in a molecular ecological network of disease","publication_year":2018,"publication_date":"2018-04-01","ids":{"openalex":"https://openalex.org/W2798009828","doi":"https://doi.org/10.1186/s12918-018-0531-8","mag":"2798009828","pmid":"https://pubmed.ncbi.nlm.nih.gov/29671403"},"language":"en","primary_location":{"id":"doi:10.1186/s12918-018-0531-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12918-018-0531-8","pdf_url":"https://bmcsystbiol.biomedcentral.com/track/pdf/10.1186/s12918-018-0531-8","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcsystbiol.biomedcentral.com/track/pdf/10.1186/s12918-018-0531-8","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5046400445","display_name":"Mengxuan Lyu","orcid":null},"institutions":[{"id":"https://openalex.org/I168719708","display_name":"City University of Hong Kong","ror":"https://ror.org/03q8dnn23","country_code":"HK","type":"education","lineage":["https://openalex.org/I168719708"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Mengxuan Lyu","raw_affiliation_strings":["Department of Computer Science, City University of Hong Kong, Tat Chee Avenue, Hong Kong, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, City University of Hong Kong, Tat Chee Avenue, Hong Kong, China","institution_ids":["https://openalex.org/I168719708"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100685931","display_name":"Jiaxing Chen","orcid":"https://orcid.org/0000-0001-5795-6722"},"institutions":[{"id":"https://openalex.org/I168719708","display_name":"City University of Hong Kong","ror":"https://ror.org/03q8dnn23","country_code":"HK","type":"education","lineage":["https://openalex.org/I168719708"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Jiaxing Chen","raw_affiliation_strings":["Department of Computer Science, City University of Hong Kong, Tat Chee Avenue, Hong Kong, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, City University of Hong Kong, Tat Chee Avenue, Hong Kong, China","institution_ids":["https://openalex.org/I168719708"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046942454","display_name":"Yiqi Jiang","orcid":"https://orcid.org/0000-0003-4950-937X"},"institutions":[{"id":"https://openalex.org/I168719708","display_name":"City University of Hong Kong","ror":"https://ror.org/03q8dnn23","country_code":"HK","type":"education","lineage":["https://openalex.org/I168719708"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Yiqi Jiang","raw_affiliation_strings":["Department of Computer Science, City University of Hong Kong, Tat Chee Avenue, Hong Kong, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, City University of Hong Kong, Tat Chee Avenue, Hong Kong, China","institution_ids":["https://openalex.org/I168719708"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051506618","display_name":"Wei Dong","orcid":"https://orcid.org/0000-0001-9906-5426"},"institutions":[{"id":"https://openalex.org/I168719708","display_name":"City University of Hong Kong","ror":"https://ror.org/03q8dnn23","country_code":"HK","type":"education","lineage":["https://openalex.org/I168719708"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Wei Dong","raw_affiliation_strings":["Department of Computer Science, City University of Hong Kong, Tat Chee Avenue, Hong Kong, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, City University of Hong Kong, Tat Chee Avenue, Hong Kong, China","institution_ids":["https://openalex.org/I168719708"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013106852","display_name":"Fang Zhou","orcid":"https://orcid.org/0000-0003-0189-3392"},"institutions":[{"id":"https://openalex.org/I168719708","display_name":"City University of Hong Kong","ror":"https://ror.org/03q8dnn23","country_code":"HK","type":"education","lineage":["https://openalex.org/I168719708"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Zhou Fang","raw_affiliation_strings":["Department of Computer Science, City University of Hong Kong, Tat Chee Avenue, Hong Kong, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, City University of Hong Kong, Tat Chee Avenue, Hong Kong, China","institution_ids":["https://openalex.org/I168719708"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083428910","display_name":"Shuai Cheng Li","orcid":"https://orcid.org/0000-0001-6246-6349"},"institutions":[{"id":"https://openalex.org/I168719708","display_name":"City University of Hong Kong","ror":"https://ror.org/03q8dnn23","country_code":"HK","type":"education","lineage":["https://openalex.org/I168719708"]}],"countries":["HK"],"is_corresponding":true,"raw_author_name":"Shuaicheng Li","raw_affiliation_strings":["Department of Computer Science, City University of Hong Kong, Tat Chee Avenue, Hong Kong, China. shuaicli@gmail.com","Department of Computer Science, City University of Hong Kong, Tat Chee Avenue, Hong Kong, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, City University of Hong Kong, Tat Chee Avenue, Hong Kong, China. shuaicli@gmail.com","institution_ids":["https://openalex.org/I168719708"]},{"raw_affiliation_string":"Department of Computer Science, City University of Hong Kong, Tat Chee Avenue, Hong Kong, China","institution_ids":["https://openalex.org/I168719708"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5083428910"],"corresponding_institution_ids":["https://openalex.org/I168719708"],"apc_list":{"value":2290,"currency":"USD","value_usd":2290},"apc_paid":{"value":2290,"currency":"USD","value_usd":2290},"fwci":0.0824,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.41857231,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"12","issue":"S1","first_page":"5","last_page":"5"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.6754999756813049,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.6754999756813049,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.08540000021457672,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10064","display_name":"Complex Network Analysis Techniques","score":0.019899999722838402,"subfield":{"id":"https://openalex.org/subfields/3109","display_name":"Statistical and Nonlinear Physics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.5979678630828857},{"id":"https://openalex.org/keywords/construct","display_name":"Construct (python library)","score":0.5876443386077881},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4912068247795105},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.44904035329818726},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4390054941177368},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.39315065741539},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.3459472060203552},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3370315432548523}],"concepts":[{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.5979678630828857},{"id":"https://openalex.org/C2780801425","wikidata":"https://www.wikidata.org/wiki/Q5164392","display_name":"Construct (python library)","level":2,"score":0.5876443386077881},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4912068247795105},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.44904035329818726},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4390054941177368},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.39315065741539},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.3459472060203552},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3370315432548523},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069196","descriptor_name":"Gastrointestinal Microbiome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069196","descriptor_name":"Gastrointestinal Microbiome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069196","descriptor_name":"Gastrointestinal Microbiome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001172","descriptor_name":"Arthritis, Rheumatoid","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D001172","descriptor_name":"Arthritis, Rheumatoid","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D001172","descriptor_name":"Arthritis, Rheumatoid","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D003924","descriptor_name":"Diabetes Mellitus, Type 2","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D003924","descriptor_name":"Diabetes Mellitus, Type 2","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D003924","descriptor_name":"Diabetes Mellitus, Type 2","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009055","descriptor_name":"Mouth","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D009055","descriptor_name":"Mouth","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D009055","descriptor_name":"Mouth","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1186/s12918-018-0531-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12918-018-0531-8","pdf_url":"https://bmcsystbiol.biomedcentral.com/track/pdf/10.1186/s12918-018-0531-8","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},{"id":"pmid:29671403","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29671403","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC systems biology","raw_type":null},{"id":"pmh:oai:doaj.org/article:50138f65c7bc4bf88c674bbec817ab4e","is_oa":false,"landing_page_url":"https://doaj.org/article/50138f65c7bc4bf88c674bbec817ab4e","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Systems Biology, Vol 12, Iss S1, Pp 89-99 (2018)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:4847973","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC5907152","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:5907152","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5907152","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Syst Biol","raw_type":"Text"},{"id":"pmh:oai:pure.atira.dk:publications/b5c1c1e6-9c4a-4c33-b1d8-d525d8569f02","is_oa":true,"landing_page_url":"https://hdl.handle.net/2031/b5c1c1e6-9c4a-4c33-b1d8-d525d8569f02","pdf_url":null,"source":{"id":"https://openalex.org/S7407055387","display_name":"CityU Scholars","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Lyu, M, Chen, J, Jiang, Y, Dong, W, Fang, Z & Li, S 2018, 'KDiamend : a package for detecting key drivers in a molecular ecological network of disease', BMC Systems Biology, vol. 12, no. Suppl 1, 5. https://doi.org/10.1186/s12918-018-0531-8","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1186/s12918-018-0531-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12918-018-0531-8","pdf_url":"https://bmcsystbiol.biomedcentral.com/track/pdf/10.1186/s12918-018-0531-8","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320309893","display_name":"City University of Hong Kong","ror":"https://ror.org/03q8dnn23"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2798009828.pdf","grobid_xml":"https://content.openalex.org/works/W2798009828.grobid-xml"},"referenced_works_count":48,"referenced_works":["https://openalex.org/W1601221684","https://openalex.org/W1854214752","https://openalex.org/W1864161604","https://openalex.org/W1907046813","https://openalex.org/W1963572999","https://openalex.org/W1964305071","https://openalex.org/W1966327575","https://openalex.org/W1968358424","https://openalex.org/W1973370947","https://openalex.org/W1985226288","https://openalex.org/W1995386393","https://openalex.org/W2004014148","https://openalex.org/W2006606200","https://openalex.org/W2014284991","https://openalex.org/W2016250935","https://openalex.org/W2026006003","https://openalex.org/W2033105784","https://openalex.org/W2040704490","https://openalex.org/W2044525257","https://openalex.org/W2044712133","https://openalex.org/W2064874359","https://openalex.org/W2067079988","https://openalex.org/W2071841602","https://openalex.org/W2089357254","https://openalex.org/W2090018148","https://openalex.org/W2113005940","https://openalex.org/W2113552312","https://openalex.org/W2115098571","https://openalex.org/W2117324809","https://openalex.org/W2122261046","https://openalex.org/W2125631472","https://openalex.org/W2142013493","https://openalex.org/W2142473155","https://openalex.org/W2148663653","https://openalex.org/W2156631105","https://openalex.org/W2158238509","https://openalex.org/W2168879981","https://openalex.org/W2200388872","https://openalex.org/W2262330054","https://openalex.org/W2280650020","https://openalex.org/W2295388714","https://openalex.org/W2473252665","https://openalex.org/W2511297415","https://openalex.org/W2557496587","https://openalex.org/W2577842642","https://openalex.org/W2622687477","https://openalex.org/W2724303067","https://openalex.org/W4249119014"],"related_works":["https://openalex.org/W2366107444","https://openalex.org/W1976205134","https://openalex.org/W2381570729","https://openalex.org/W4248336175","https://openalex.org/W3009369890","https://openalex.org/W2391445434","https://openalex.org/W4312490297","https://openalex.org/W2358812761","https://openalex.org/W4245853730","https://openalex.org/W2119000371"],"abstract_inverted_index":{"BACKGROUND:":[0],"Microbial":[1],"abundance":[2,19,106],"profiles":[3],"are":[4,34,66,169],"applied":[5,51,136],"widely":[6],"to":[7,56,68,78,97,138,145,171,183,226,233],"understand":[8],"diseases":[9],"from":[10],"the":[11,18,39,63,80,86,93,98,102,105,109,114,124,139,172,208,217,235],"aspect":[12],"of":[13,21,167,210,216,219,237],"microbial":[14,143],"communities.":[15],"By":[16],"investigating":[17],"associations":[20],"species":[22],"or":[23],"genes,":[24],"we":[25,49,84,91,122,178],"can":[26],"construct":[27,57],"molecular":[28],"ecological":[29],"networks":[30],"(MENs).":[31],"The":[32,59,192,239],"MENs":[33,65],"often":[35],"constructed":[36],"by":[37,100,127,188],"calculating":[38],"Pearson":[40],"correlation":[41,103],"coefficient":[42],"(PCC)":[43],"between":[44,104],"genes.":[45],"In":[46,176],"this":[47],"work,":[48],"also":[50],"multimodal":[52],"mutual":[53],"information":[54],"(MMI)":[55],"MENs.":[58],"members":[60],"which":[61],"drive":[62],"concerned":[64,199],"referred":[67],"as":[69,214],"key":[70,81,125,147,165,228],"drivers.":[71,82],"RESULTS:":[72],"We":[73,129,158],"proposed":[74],"a":[75,131,185],"novel":[76],"method":[77],"detect":[79,146,227],"First,":[83],"partitioned":[85],"MEN":[87],"into":[88],"subnetworks.":[89],"Then":[90],"identified":[92,120],"most":[94],"pertinent":[95],"subnetworks":[96,162,181,194],"disease":[99,115,186],"measuring":[101],"pattern":[107],"and":[108,135,141,154,163,230],"delegated":[110],"phenotype-the":[111],"variable":[112],"representing":[113],"phenotypes.":[116],"Last,":[117],"for":[118,149],"each":[119],"subnetwork,":[121],"detected":[123,159,179],"driver":[126],"PageRank.":[128],"developed":[130],"package":[132,240],"named":[133],"KDiamend":[134,223],"it":[137],"gut":[140],"oral":[142],"data":[144],"drivers":[148,166,218,229],"Type":[150],"2":[151],"diabetes":[152],"(T2D)":[153],"Rheumatoid":[155],"Arthritis":[156],"(RA).":[157],"six":[160],"T2D-relevant":[161],"three":[164],"them":[168],"related":[170,182],"carbohydrate":[173],"metabolic":[174],"process.":[175],"addition,":[177],"nine":[180],"RA,":[184],"caused":[187],"compromised":[189],"immune":[190],"systems.":[191],"extracted":[193],"include":[195],"InterPro":[196],"matches":[197],"(IPRs)":[198],"with":[200],"immunoglobulin,":[201],"Sporulation,":[202],"biofilm,":[203],"Flaviviruses,":[204],"bacteriophage,":[205],"etc.,":[206],"while":[207],"development":[209,236],"biofilms":[211],"is":[212,224,241],"regarded":[213],"one":[215],"persistent":[220],"infections.":[221],"CONCLUSION:":[222],"feasible":[225],"offers":[231],"insights":[232],"uncover":[234],"diseases.":[238],"freely":[242],"available":[243],"at":[244],"http://www.deepomics.org/pipelines/3DCD6955FEF2E64A/":[245],".":[246]},"counts_by_year":[{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2018,"cited_by_count":1}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
