{"id":"https://openalex.org/W2798126763","doi":"https://doi.org/10.1186/s12918-018-0528-3","title":"Discovery of Boolean metabolic networks: integer linear programming based approach","display_name":"Discovery of Boolean metabolic networks: integer linear programming based approach","publication_year":2018,"publication_date":"2018-04-01","ids":{"openalex":"https://openalex.org/W2798126763","doi":"https://doi.org/10.1186/s12918-018-0528-3","mag":"2798126763","pmid":"https://pubmed.ncbi.nlm.nih.gov/29671395"},"language":"en","primary_location":{"id":"doi:10.1186/s12918-018-0528-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12918-018-0528-3","pdf_url":"https://bmcsystbiol.biomedcentral.com/track/pdf/10.1186/s12918-018-0528-3","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcsystbiol.biomedcentral.com/track/pdf/10.1186/s12918-018-0528-3","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5079234443","display_name":"Yushan Qiu","orcid":"https://orcid.org/0000-0002-9393-3648"},"institutions":[{"id":"https://openalex.org/I180726961","display_name":"Shenzhen University","ror":"https://ror.org/01vy4gh70","country_code":"CN","type":"education","lineage":["https://openalex.org/I180726961"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yushan Qiu","raw_affiliation_strings":["College of Mathematics and Statistics, Shenzhen University, Nanhai Avenue 3688, Shenzhen, 518060, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Mathematics and Statistics, Shenzhen University, Nanhai Avenue 3688, Shenzhen, 518060, China","institution_ids":["https://openalex.org/I180726961"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100712102","display_name":"Hao Jiang","orcid":"https://orcid.org/0000-0001-5891-6044"},"institutions":[{"id":"https://openalex.org/I78988378","display_name":"Renmin University of China","ror":"https://ror.org/041pakw92","country_code":"CN","type":"education","lineage":["https://openalex.org/I78988378"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Hao Jiang","raw_affiliation_strings":["Department of Mathematics, School of Information, Renmin University of China, No.59 Zhong Guan Cun Avenue, Hai Dian District, Beijing, 100872, China. jiangh@ruc.edu.cn","Department of Mathematics, School of Information, Renmin University of China, No.59 Zhong Guan Cun Avenue, Hai Dian District, Beijing, 100872, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematics, School of Information, Renmin University of China, No.59 Zhong Guan Cun Avenue, Hai Dian District, Beijing, 100872, China. jiangh@ruc.edu.cn","institution_ids":["https://openalex.org/I78988378"]},{"raw_affiliation_string":"Department of Mathematics, School of Information, Renmin University of China, No.59 Zhong Guan Cun Avenue, Hai Dian District, Beijing, 100872, China","institution_ids":["https://openalex.org/I78988378"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086061723","display_name":"Wai\u2010Ki Ching","orcid":"https://orcid.org/0000-0002-5785-3210"},"institutions":[{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Wai-Ki Ching","raw_affiliation_strings":["Department of Mathematics, The University of Hong Kong, Pokfulam Road, Hong Kong, Hong Kong"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematics, The University of Hong Kong, Pokfulam Road, Hong Kong, Hong Kong","institution_ids":["https://openalex.org/I889458895"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083624531","display_name":"Xiaoqing Cheng","orcid":"https://orcid.org/0000-0001-5321-1459"},"institutions":[{"id":"https://openalex.org/I87445476","display_name":"Xi'an Jiaotong University","ror":"https://ror.org/017zhmm22","country_code":"CN","type":"education","lineage":["https://openalex.org/I87445476"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaoqing Cheng","raw_affiliation_strings":["School of Mathematics and Statistics, Xi'An Jiaotong University, No.28 West Xianning Road, Xi'An, 710049, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Mathematics and Statistics, Xi'An Jiaotong University, No.28 West Xianning Road, Xi'An, 710049, China","institution_ids":["https://openalex.org/I87445476"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5100712102"],"corresponding_institution_ids":["https://openalex.org/I78988378"],"apc_list":{"value":2290,"currency":"USD","value_usd":2290},"apc_paid":{"value":2290,"currency":"USD","value_usd":2290},"fwci":2.5541,"has_fulltext":true,"cited_by_count":32,"citation_normalized_percentile":{"value":0.90661978,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"12","issue":"S1","first_page":"7","last_page":"7"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9771000146865845,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9771000146865845,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.003700000001117587,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11882","display_name":"Plant biochemistry and biosynthesis","score":0.0035000001080334187,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/integer-programming","display_name":"Integer programming","score":0.667841911315918},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6617395281791687},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.5947601795196533},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.49236738681793213},{"id":"https://openalex.org/keywords/metabolic-network","display_name":"Metabolic network","score":0.4414815902709961},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.42181718349456787},{"id":"https://openalex.org/keywords/linear-programming","display_name":"Linear programming","score":0.4187120199203491},{"id":"https://openalex.org/keywords/formalism","display_name":"Formalism (music)","score":0.4160747230052948},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.36939549446105957},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.34227779507637024},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.33354753255844116},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.2304944097995758},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.1852705180644989},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.17802470922470093}],"concepts":[{"id":"https://openalex.org/C56086750","wikidata":"https://www.wikidata.org/wiki/Q6042592","display_name":"Integer programming","level":2,"score":0.667841911315918},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6617395281791687},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.5947601795196533},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.49236738681793213},{"id":"https://openalex.org/C101810790","wikidata":"https://www.wikidata.org/wiki/Q2263094","display_name":"Metabolic network","level":2,"score":0.4414815902709961},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.42181718349456787},{"id":"https://openalex.org/C41045048","wikidata":"https://www.wikidata.org/wiki/Q202843","display_name":"Linear programming","level":2,"score":0.4187120199203491},{"id":"https://openalex.org/C73301696","wikidata":"https://www.wikidata.org/wiki/Q5469984","display_name":"Formalism (music)","level":3,"score":0.4160747230052948},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.36939549446105957},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.34227779507637024},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.33354753255844116},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.2304944097995758},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.1852705180644989},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.17802470922470093},{"id":"https://openalex.org/C153349607","wikidata":"https://www.wikidata.org/wiki/Q36649","display_name":"Visual arts","level":1,"score":0.0},{"id":"https://openalex.org/C558565934","wikidata":"https://www.wikidata.org/wiki/Q2743","display_name":"Musical","level":2,"score":0.0},{"id":"https://openalex.org/C142362112","wikidata":"https://www.wikidata.org/wiki/Q735","display_name":"Art","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011382","descriptor_name":"Programming, Linear","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011382","descriptor_name":"Programming, Linear","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011382","descriptor_name":"Programming, Linear","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1186/s12918-018-0528-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12918-018-0528-3","pdf_url":"https://bmcsystbiol.biomedcentral.com/track/pdf/10.1186/s12918-018-0528-3","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},{"id":"pmid:29671395","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29671395","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC systems biology","raw_type":null},{"id":"pmh:oai:doaj.org/article:74cf92e55c114a4287e1233b167f0a44","is_oa":false,"landing_page_url":"https://doaj.org/article/74cf92e55c114a4287e1233b167f0a44","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Systems Biology, Vol 12, Iss S1, Pp 53-60 (2018)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:4847995","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC5907190","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:hub.hku.hk:10722/252734","is_oa":true,"landing_page_url":"http://hdl.handle.net/10722/252734","pdf_url":null,"source":{"id":"https://openalex.org/S4377196271","display_name":"The HKU Scholars Hub (University of Hong Kong)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I889458895","host_organization_name":"University of Hong Kong","host_organization_lineage":["https://openalex.org/I889458895"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:5907190","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5907190","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Syst Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12918-018-0528-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12918-018-0528-3","pdf_url":"https://bmcsystbiol.biomedcentral.com/track/pdf/10.1186/s12918-018-0528-3","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.6200000047683716}],"awards":[{"id":"https://openalex.org/G1631036518","display_name":null,"funder_award_id":"11626229","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2730414830","display_name":null,"funder_award_id":"11671158","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8126262038","display_name":null,"funder_award_id":"91730301","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2798126763.pdf","grobid_xml":"https://content.openalex.org/works/W2798126763.grobid-xml"},"referenced_works_count":37,"referenced_works":["https://openalex.org/W1880178588","https://openalex.org/W1963547452","https://openalex.org/W1966589279","https://openalex.org/W1981073372","https://openalex.org/W1984096521","https://openalex.org/W1988257250","https://openalex.org/W1995089537","https://openalex.org/W2001423612","https://openalex.org/W2010026173","https://openalex.org/W2020363132","https://openalex.org/W2029775948","https://openalex.org/W2034993111","https://openalex.org/W2035144289","https://openalex.org/W2039190029","https://openalex.org/W2047190988","https://openalex.org/W2056305771","https://openalex.org/W2059442943","https://openalex.org/W2062365651","https://openalex.org/W2063262642","https://openalex.org/W2068806234","https://openalex.org/W2081562576","https://openalex.org/W2100762760","https://openalex.org/W2113250450","https://openalex.org/W2114484738","https://openalex.org/W2119866908","https://openalex.org/W2132207273","https://openalex.org/W2132989642","https://openalex.org/W2141899879","https://openalex.org/W2142522788","https://openalex.org/W2148365800","https://openalex.org/W2159482845","https://openalex.org/W2160648174","https://openalex.org/W2498998511","https://openalex.org/W2587589816","https://openalex.org/W4294216483","https://openalex.org/W4301808069","https://openalex.org/W6983123440"],"related_works":["https://openalex.org/W2983685817","https://openalex.org/W2133150343","https://openalex.org/W4285278887","https://openalex.org/W2995925505","https://openalex.org/W134783735","https://openalex.org/W2365237642","https://openalex.org/W2072067873","https://openalex.org/W3116484972","https://openalex.org/W2047632644","https://openalex.org/W4232431455"],"abstract_inverted_index":{"BACKGROUND:":[0],"Traditional":[1],"drug":[2,63,146,175],"discovery":[3,173],"methods":[4,57],"focused":[5],"on":[6,86,95],"the":[7,42,62,82,105,112,127,132,143,156,160,172],"efficacy":[8,20],"of":[9,19,33,84,145,174],"drugs":[10,121],"rather":[11],"than":[12],"their":[13],"toxicity.":[14],"However,":[15],"toxicity":[16],"and/or":[17],"lack":[18],"are":[21,26,58,122],"produced":[22],"when":[23],"unintended":[24],"targets":[25,35,64],"affected":[27],"in":[28,88,131,142],"metabolic":[29,89],"networks.":[30,90],"Thus,":[31],"identification":[32],"biological":[34],"which":[36],"can":[37,168],"be":[38],"manipulated":[39],"to":[40,60,103,110,171],"produce":[41],"desired":[43],"effect":[44],"with":[45,129],"minimum":[46],"side-effects":[47],"has":[48],"become":[49],"an":[50],"important":[51],"and":[52,155],"challenging":[53],"topic.":[54],"Efficient":[55],"computational":[56,77,150],"required":[59],"identify":[61,104],"while":[65],"incurring":[66],"minimal":[67],"side-effects.":[68,113],"RESULTS:":[69],"In":[70],"this":[71],"paper,":[72],"we":[73],"propose":[74],"a":[75,139],"graph-based":[76,149],"damage":[78,151],"model":[79,152],"that":[80],"summarizes":[81],"impact":[83],"enzymes":[85,117],"compounds":[87],"An":[91],"efficient":[92],"method":[93],"based":[94],"Integer":[96],"Linear":[97],"Programming":[98],"formalism":[99],"is":[100,153,163,180],"then":[101,123],"developed":[102,178],"optimal":[106],"enzyme-combination":[107],"so":[108],"as":[109],"minimize":[111],"The":[114,165],"identified":[115],"target":[116],"for":[118],"known":[119],"successful":[120],"verified":[124],"by":[125],"comparing":[126],"results":[128],"those":[130],"existing":[133],"literature.":[134],"CONCLUSIONS:":[135],"Side-effects":[136],"reduction":[137],"plays":[138],"crucial":[140],"role":[141],"study":[144],"development.":[147],"A":[148],"proposed":[154,166],"theoretical":[157],"analysis":[158],"states":[159],"captured":[161],"problem":[162],"NP-completeness.":[164],"approaches":[167],"therefore":[169],"contribute":[170],"targets.":[176],"Our":[177],"software":[179],"available":[181],"at":[182],"\"":[183],"http://hkumath.hku.hk/~wkc/APBC2018-metabolic-network.zip":[184],"\".":[185]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2019,"cited_by_count":30},{"year":2018,"cited_by_count":1}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
