{"id":"https://openalex.org/W2760193392","doi":"https://doi.org/10.1186/s12918-017-0452-y","title":"A two-step framework for inferring direct protein-protein interaction network from AP-MS data","display_name":"A two-step framework for inferring direct protein-protein interaction network from AP-MS data","publication_year":2017,"publication_date":"2017-09-01","ids":{"openalex":"https://openalex.org/W2760193392","doi":"https://doi.org/10.1186/s12918-017-0452-y","mag":"2760193392","pmid":"https://pubmed.ncbi.nlm.nih.gov/28950876"},"language":"en","primary_location":{"id":"doi:10.1186/s12918-017-0452-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12918-017-0452-y","pdf_url":"https://bmcsystbiol.biomedcentral.com/track/pdf/10.1186/s12918-017-0452-y","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://bmcsystbiol.biomedcentral.com/track/pdf/10.1186/s12918-017-0452-y","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101610890","display_name":"Bo Tian","orcid":"https://orcid.org/0000-0002-9722-2528"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bo Tian","raw_affiliation_strings":["School of Software, Dalian University of Technology, Tuqiang Road, Dalian, China"],"affiliations":[{"raw_affiliation_string":"School of Software, Dalian University of Technology, Tuqiang Road, Dalian, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070998415","display_name":"Can Zhao","orcid":"https://orcid.org/0000-0001-7286-3452"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Can Zhao","raw_affiliation_strings":["School of Software, Dalian University of Technology, Tuqiang Road, Dalian, China"],"affiliations":[{"raw_affiliation_string":"School of Software, Dalian University of Technology, Tuqiang Road, Dalian, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054079625","display_name":"Feiyang Gu","orcid":"https://orcid.org/0000-0001-6581-5938"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Feiyang Gu","raw_affiliation_strings":["School of Software, Dalian University of Technology, Tuqiang Road, Dalian, China"],"affiliations":[{"raw_affiliation_string":"School of Software, Dalian University of Technology, Tuqiang Road, Dalian, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5009588567","display_name":"Zengyou He","orcid":"https://orcid.org/0000-0001-9526-8816"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Zengyou He","raw_affiliation_strings":["Key Laboratory for Ubiquitous Network and Service Software of Liaoning, Tuqiang Road 321, Dalian, 116600, China. zyhe@dlut.edu.cn","School of Software, Dalian University of Technology, Tuqiang Road, Dalian, China. zyhe@dlut.edu.cn","Key Laboratory for Ubiquitous Network and Service Software of Liaoning, Tuqiang Road 321, Dalian, 116600, China"],"affiliations":[{"raw_affiliation_string":"Key Laboratory for Ubiquitous Network and Service Software of Liaoning, Tuqiang Road 321, Dalian, 116600, China. zyhe@dlut.edu.cn","institution_ids":[]},{"raw_affiliation_string":"School of Software, Dalian University of Technology, Tuqiang Road, Dalian, China. zyhe@dlut.edu.cn","institution_ids":[]},{"raw_affiliation_string":"Key Laboratory for Ubiquitous Network and Service Software of Liaoning, Tuqiang Road 321, Dalian, 116600, China","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5009588567"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.5049,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":{"value":0.63396584,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"11","issue":"S4","first_page":"82","last_page":"82"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13127","display_name":"Biotin and Related Studies","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13127","display_name":"Biotin and Related Studies","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7264307141304016},{"id":"https://openalex.org/keywords/initialization","display_name":"Initialization","score":0.723562479019165},{"id":"https://openalex.org/keywords/false-positive-paradox","display_name":"False positive paradox","score":0.7172918319702148},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5455779433250427},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.38487422466278076},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.312664657831192},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.18413498997688293}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7264307141304016},{"id":"https://openalex.org/C114466953","wikidata":"https://www.wikidata.org/wiki/Q6034165","display_name":"Initialization","level":2,"score":0.723562479019165},{"id":"https://openalex.org/C64869954","wikidata":"https://www.wikidata.org/wiki/Q1859747","display_name":"False positive paradox","level":2,"score":0.7172918319702148},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5455779433250427},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.38487422466278076},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.312664657831192},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.18413498997688293},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D002846","descriptor_name":"Chromatography, Affinity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002846","descriptor_name":"Chromatography, Affinity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002846","descriptor_name":"Chromatography, Affinity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12918-017-0452-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12918-017-0452-y","pdf_url":"https://bmcsystbiol.biomedcentral.com/track/pdf/10.1186/s12918-017-0452-y","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},{"id":"pmid:28950876","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28950876","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC systems biology","raw_type":null},{"id":"pmh:oai:doaj.org/article:bc4d9f72177445feaa87bdbf0b70e832","is_oa":true,"landing_page_url":"https://doaj.org/article/bc4d9f72177445feaa87bdbf0b70e832","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Systems Biology, Vol 11, Iss S4, Pp 17-25 (2017)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:4538924","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5615237","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12918-017-0452-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12918-017-0452-y","pdf_url":"https://bmcsystbiol.biomedcentral.com/track/pdf/10.1186/s12918-017-0452-y","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1231421488","display_name":null,"funder_award_id":"under","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1264312442","display_name":null,"funder_award_id":"DUT14QY07","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G2087396116","display_name":null,"funder_award_id":"China","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2376276132","display_name":null,"funder_award_id":"China","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G306606422","display_name":null,"funder_award_id":"61572094","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3317480652","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3366835791","display_name":null,"funder_award_id":"No. 61572094","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3891623718","display_name":null,"funder_award_id":"Grant No. 61572094","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5249178904","display_name":null,"funder_award_id":"Grant No. 6","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5994120800","display_name":null,"funder_award_id":"Natural","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7110810602","display_name":null,"funder_award_id":"61572094","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G7726157001","display_name":null,"funder_award_id":"Grant No.","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8951484681","display_name":null,"funder_award_id":"Grant","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2760193392.pdf","grobid_xml":"https://content.openalex.org/works/W2760193392.grobid-xml"},"referenced_works_count":31,"referenced_works":["https://openalex.org/W1916919897","https://openalex.org/W1950194999","https://openalex.org/W1996076856","https://openalex.org/W2006124679","https://openalex.org/W2015208937","https://openalex.org/W2045028594","https://openalex.org/W2047077861","https://openalex.org/W2050721857","https://openalex.org/W2073094091","https://openalex.org/W2097950642","https://openalex.org/W2099302171","https://openalex.org/W2106969933","https://openalex.org/W2107146119","https://openalex.org/W2109248504","https://openalex.org/W2110150937","https://openalex.org/W2116117181","https://openalex.org/W2116447934","https://openalex.org/W2117815893","https://openalex.org/W2126311442","https://openalex.org/W2128095303","https://openalex.org/W2128343754","https://openalex.org/W2129794000","https://openalex.org/W2142286883","https://openalex.org/W2146051292","https://openalex.org/W2150902060","https://openalex.org/W2154600255","https://openalex.org/W2159451611","https://openalex.org/W2200598316","https://openalex.org/W2485156879","https://openalex.org/W3025428150","https://openalex.org/W4247458062"],"related_works":["https://openalex.org/W2374512474","https://openalex.org/W2358639633","https://openalex.org/W2374442885","https://openalex.org/W2368370270","https://openalex.org/W2180809734","https://openalex.org/W4316511403","https://openalex.org/W2093516115","https://openalex.org/W2358941527","https://openalex.org/W4323341883","https://openalex.org/W2735939546"],"abstract_inverted_index":{"The":[0],"proposed":[1],"framework":[2],"is":[3],"sufficiently":[4],"general":[5],"to":[6,16],"incorporate":[7],"any":[8],"feasible":[9],"methods":[10],"in":[11,26],"each":[12],"step":[13],"so":[14],"as":[15],"have":[17],"potential":[18],"for":[19],"handling":[20],"different":[21],"types":[22],"of":[23],"AP-MS":[24],"data":[25],"the":[27],"future":[28],"applications.":[29]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":3}],"updated_date":"2026-04-13T07:58:08.660418","created_date":"2025-10-10T00:00:00"}
