{"id":"https://openalex.org/W2736085254","doi":"https://doi.org/10.1186/s12918-017-0442-0","title":"Development of an in silico method for the identification of subcomplexes involved in the biogenesis of multiprotein complexes in Saccharomyces cerevisiae","display_name":"Development of an in silico method for the identification of subcomplexes involved in the biogenesis of multiprotein complexes in Saccharomyces cerevisiae","publication_year":2017,"publication_date":"2017-07-11","ids":{"openalex":"https://openalex.org/W2736085254","doi":"https://doi.org/10.1186/s12918-017-0442-0","mag":"2736085254","pmid":"https://pubmed.ncbi.nlm.nih.gov/28693620"},"language":"en","primary_location":{"id":"doi:10.1186/s12918-017-0442-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12918-017-0442-0","pdf_url":"https://bmcsystbiol.biomedcentral.com/track/pdf/10.1186/s12918-017-0442-0","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://bmcsystbiol.biomedcentral.com/track/pdf/10.1186/s12918-017-0442-0","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5048162334","display_name":"Annie Glatigny","orcid":null},"institutions":[{"id":"https://openalex.org/I102197404","display_name":"Universit\u00e9 Paris-Sud","ror":"https://ror.org/028rypz17","country_code":"FR","type":"education","lineage":["https://openalex.org/I102197404"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I2738703131","display_name":"Commissariat \u00e0 l'\u00c9nergie Atomique et aux \u00c9nergies Alternatives","ror":"https://ror.org/00jjx8s55","country_code":"FR","type":"government","lineage":["https://openalex.org/I2738703131"]},{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]},{"id":"https://openalex.org/I4210106617","display_name":"Institut de Biologie Int\u00e9grative de la Cellule","ror":"https://ror.org/01fftxe08","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I2738703131","https://openalex.org/I2738703131","https://openalex.org/I277688954","https://openalex.org/I4210106617","https://openalex.org/I4210113668"]},{"id":"https://openalex.org/I4210128565","display_name":"CEA Paris-Saclay","ror":"https://ror.org/03n15ch10","country_code":"FR","type":"government","lineage":["https://openalex.org/I2738703131","https://openalex.org/I277688954","https://openalex.org/I4210128565"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Annie Glatigny","raw_affiliation_strings":["Institute for Integrative Biology of the Cell (I2BC), CEA, CNRS, Universit\u00e9 Paris Sud, Universit\u00e9 Paris-Saclay, Avenue de la Terrasse, 91198, Gif-sur-Yvette, France","I2BC - Institut de Biologie Int\u00e9grative de la Cellule (B\u00e2timent 21, 1 avenue de la Terrasse, 91198 Gif/Yvette cedex - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Integrative Biology of the Cell (I2BC), CEA, CNRS, Universit\u00e9 Paris Sud, Universit\u00e9 Paris-Saclay, Avenue de la Terrasse, 91198, Gif-sur-Yvette, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I4210128565","https://openalex.org/I4210106617","https://openalex.org/I277688954","https://openalex.org/I2738703131","https://openalex.org/I102197404"]},{"raw_affiliation_string":"I2BC - Institut de Biologie Int\u00e9grative de la Cellule (B\u00e2timent 21, 1 avenue de la Terrasse, 91198 Gif/Yvette cedex - France)","institution_ids":["https://openalex.org/I4210106617"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091393268","display_name":"Philippe Gambette","orcid":"https://orcid.org/0000-0001-7062-0262"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210152518","display_name":"Laboratoire d'Informatique Gaspard-Monge","ror":"https://ror.org/04t50yk91","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I142631665","https://openalex.org/I4210145102","https://openalex.org/I4210152518","https://openalex.org/I4210154111","https://openalex.org/I4210159245"]},{"id":"https://openalex.org/I4210154111","display_name":"Universit\u00e9 Gustave Eiffel","ror":"https://ror.org/03x42jk29","country_code":"FR","type":"education","lineage":["https://openalex.org/I4210154111"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Philippe Gambette","raw_affiliation_strings":["Universit\u00e9 Paris-Est, LIGM (UMR 8049), CNRS, ENPC, ESIEE, UPEM, 77454, Champs-sur-Marne, France","LIGM - Laboratoire d'Informatique Gaspard-Monge (Universit\u00e9 de Paris-Est Marne-la-Vall\u00e9e, Cit\u00e9 Descartes, B\u00e2timent Copernic, 5 bd Descartes, 77454 Marne-la-Vall\u00e9e Cedex 2 - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Universit\u00e9 Paris-Est, LIGM (UMR 8049), CNRS, ENPC, ESIEE, UPEM, 77454, Champs-sur-Marne, France","institution_ids":["https://openalex.org/I4210152518","https://openalex.org/I1294671590","https://openalex.org/I4210154111"]},{"raw_affiliation_string":"LIGM - Laboratoire d'Informatique Gaspard-Monge (Universit\u00e9 de Paris-Est Marne-la-Vall\u00e9e, Cit\u00e9 Descartes, B\u00e2timent Copernic, 5 bd Descartes, 77454 Marne-la-Vall\u00e9e Cedex 2 - France)","institution_ids":["https://openalex.org/I4210152518","https://openalex.org/I4210154111"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083091702","display_name":"Alexa Bourand-Plantefol","orcid":null},"institutions":[{"id":"https://openalex.org/I102197404","display_name":"Universit\u00e9 Paris-Sud","ror":"https://ror.org/028rypz17","country_code":"FR","type":"education","lineage":["https://openalex.org/I102197404"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I2738703131","display_name":"Commissariat \u00e0 l'\u00c9nergie Atomique et aux \u00c9nergies Alternatives","ror":"https://ror.org/00jjx8s55","country_code":"FR","type":"government","lineage":["https://openalex.org/I2738703131"]},{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]},{"id":"https://openalex.org/I4210106617","display_name":"Institut de Biologie Int\u00e9grative de la Cellule","ror":"https://ror.org/01fftxe08","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I2738703131","https://openalex.org/I2738703131","https://openalex.org/I277688954","https://openalex.org/I4210106617","https://openalex.org/I4210113668"]},{"id":"https://openalex.org/I4210128565","display_name":"CEA Paris-Saclay","ror":"https://ror.org/03n15ch10","country_code":"FR","type":"government","lineage":["https://openalex.org/I2738703131","https://openalex.org/I277688954","https://openalex.org/I4210128565"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Alexa Bourand-Plantefol","raw_affiliation_strings":["Institute for Integrative Biology of the Cell (I2BC), CEA, CNRS, Universit\u00e9 Paris Sud, Universit\u00e9 Paris-Saclay, Avenue de la Terrasse, 91198, Gif-sur-Yvette, France","I2BC - Institut de Biologie Int\u00e9grative de la Cellule (B\u00e2timent 21, 1 avenue de la Terrasse, 91198 Gif/Yvette cedex - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Integrative Biology of the Cell (I2BC), CEA, CNRS, Universit\u00e9 Paris Sud, Universit\u00e9 Paris-Saclay, Avenue de la Terrasse, 91198, Gif-sur-Yvette, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I4210128565","https://openalex.org/I4210106617","https://openalex.org/I277688954","https://openalex.org/I2738703131","https://openalex.org/I102197404"]},{"raw_affiliation_string":"I2BC - Institut de Biologie Int\u00e9grative de la Cellule (B\u00e2timent 21, 1 avenue de la Terrasse, 91198 Gif/Yvette cedex - France)","institution_ids":["https://openalex.org/I4210106617"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110289036","display_name":"Genevi\u00e8ve Dujardin","orcid":null},"institutions":[{"id":"https://openalex.org/I102197404","display_name":"Universit\u00e9 Paris-Sud","ror":"https://ror.org/028rypz17","country_code":"FR","type":"education","lineage":["https://openalex.org/I102197404"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I2738703131","display_name":"Commissariat \u00e0 l'\u00c9nergie Atomique et aux \u00c9nergies Alternatives","ror":"https://ror.org/00jjx8s55","country_code":"FR","type":"government","lineage":["https://openalex.org/I2738703131"]},{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]},{"id":"https://openalex.org/I4210106617","display_name":"Institut de Biologie Int\u00e9grative de la Cellule","ror":"https://ror.org/01fftxe08","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I2738703131","https://openalex.org/I2738703131","https://openalex.org/I277688954","https://openalex.org/I4210106617","https://openalex.org/I4210113668"]},{"id":"https://openalex.org/I4210128565","display_name":"CEA Paris-Saclay","ror":"https://ror.org/03n15ch10","country_code":"FR","type":"government","lineage":["https://openalex.org/I2738703131","https://openalex.org/I277688954","https://openalex.org/I4210128565"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Genevi\u00e8ve Dujardin","raw_affiliation_strings":["Institute for Integrative Biology of the Cell (I2BC), CEA, CNRS, Universit\u00e9 Paris Sud, Universit\u00e9 Paris-Saclay, Avenue de la Terrasse, 91198, Gif-sur-Yvette, France","I2BC - Institut de Biologie Int\u00e9grative de la Cellule (B\u00e2timent 21, 1 avenue de la Terrasse, 91198 Gif/Yvette cedex - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Integrative Biology of the Cell (I2BC), CEA, CNRS, Universit\u00e9 Paris Sud, Universit\u00e9 Paris-Saclay, Avenue de la Terrasse, 91198, Gif-sur-Yvette, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I4210128565","https://openalex.org/I4210106617","https://openalex.org/I277688954","https://openalex.org/I2738703131","https://openalex.org/I102197404"]},{"raw_affiliation_string":"I2BC - Institut de Biologie Int\u00e9grative de la Cellule (B\u00e2timent 21, 1 avenue de la Terrasse, 91198 Gif/Yvette cedex - France)","institution_ids":["https://openalex.org/I4210106617"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5005312459","display_name":"Marie-H\u00e9l\u00e8ne Mucchielli-Giorgi","orcid":"https://orcid.org/0000-0002-4747-2561"},"institutions":[{"id":"https://openalex.org/I102197404","display_name":"Universit\u00e9 Paris-Sud","ror":"https://ror.org/028rypz17","country_code":"FR","type":"education","lineage":["https://openalex.org/I102197404"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I2738703131","display_name":"Commissariat \u00e0 l'\u00c9nergie Atomique et aux \u00c9nergies Alternatives","ror":"https://ror.org/00jjx8s55","country_code":"FR","type":"government","lineage":["https://openalex.org/I2738703131"]},{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I4210106617","display_name":"Institut de Biologie Int\u00e9grative de la Cellule","ror":"https://ror.org/01fftxe08","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I2738703131","https://openalex.org/I2738703131","https://openalex.org/I277688954","https://openalex.org/I4210106617","https://openalex.org/I4210113668"]},{"id":"https://openalex.org/I4210128565","display_name":"CEA Paris-Saclay","ror":"https://ror.org/03n15ch10","country_code":"FR","type":"government","lineage":["https://openalex.org/I2738703131","https://openalex.org/I277688954","https://openalex.org/I4210128565"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Marie-H\u00e9l\u00e8ne Mucchielli-Giorgi","raw_affiliation_strings":["Institute for Integrative Biology of the Cell (I2BC), CEA, CNRS, Universit\u00e9 Paris Sud, Universit\u00e9 Paris-Saclay, Avenue de la Terrasse, 91198, Gif-sur-Yvette, France. marie-helene.mucchielli@i2bc.paris-saclay.fr","Sorbonne Universit\u00e9s, UPMC Univ Paris 06, UFR927, F-75005, Paris, France. marie-helene.mucchielli@i2bc.paris-saclay.fr","UPMC - Universit\u00e9 Pierre et Marie Curie - Paris 6 (4 place Jussieu - 75005 Paris - France)","I2BC - Institut de Biologie Int\u00e9grative de la Cellule (B\u00e2timent 21, 1 avenue de la Terrasse, 91198 Gif/Yvette cedex - France)"],"raw_orcid":"https://orcid.org/0000-0002-4747-2561","affiliations":[{"raw_affiliation_string":"Institute for Integrative Biology of the Cell (I2BC), CEA, CNRS, Universit\u00e9 Paris Sud, Universit\u00e9 Paris-Saclay, Avenue de la Terrasse, 91198, Gif-sur-Yvette, France. marie-helene.mucchielli@i2bc.paris-saclay.fr","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I4210128565","https://openalex.org/I4210106617","https://openalex.org/I277688954","https://openalex.org/I2738703131","https://openalex.org/I102197404"]},{"raw_affiliation_string":"Sorbonne Universit\u00e9s, UPMC Univ Paris 06, UFR927, F-75005, Paris, France. marie-helene.mucchielli@i2bc.paris-saclay.fr","institution_ids":["https://openalex.org/I39804081","https://openalex.org/I277688954"]},{"raw_affiliation_string":"UPMC - Universit\u00e9 Pierre et Marie Curie - Paris 6 (4 place Jussieu - 75005 Paris - France)","institution_ids":["https://openalex.org/I39804081"]},{"raw_affiliation_string":"I2BC - Institut de Biologie Int\u00e9grative de la Cellule (B\u00e2timent 21, 1 avenue de la Terrasse, 91198 Gif/Yvette cedex - France)","institution_ids":["https://openalex.org/I4210106617"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5048162334"],"corresponding_institution_ids":["https://openalex.org/I102197404","https://openalex.org/I1294671590","https://openalex.org/I2738703131","https://openalex.org/I277688954","https://openalex.org/I4210106617","https://openalex.org/I4210128565"],"apc_list":null,"apc_paid":null,"fwci":0.1122,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.50665142,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"11","issue":"1","first_page":"67","last_page":"67"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.8632000088691711,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.8632000088691711,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.03660000115633011,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10497","display_name":"Fungal and yeast genetics research","score":0.022700000554323196,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biogenesis","display_name":"Biogenesis","score":0.808146595954895},{"id":"https://openalex.org/keywords/multiprotein-complex","display_name":"Multiprotein complex","score":0.7998824715614319},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.7457700967788696},{"id":"https://openalex.org/keywords/saccharomyces-cerevisiae","display_name":"Saccharomyces cerevisiae","score":0.732725977897644},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6181421875953674},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.6120010614395142},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5725932121276855},{"id":"https://openalex.org/keywords/immunoprecipitation","display_name":"Immunoprecipitation","score":0.5300029516220093},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5290685296058655},{"id":"https://openalex.org/keywords/protein-subunit","display_name":"Protein subunit","score":0.4832354485988617},{"id":"https://openalex.org/keywords/interactome","display_name":"Interactome","score":0.4687255620956421},{"id":"https://openalex.org/keywords/yeast","display_name":"Yeast","score":0.31568098068237305},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.2931842803955078},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.25073015689849854},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.24722346663475037}],"concepts":[{"id":"https://openalex.org/C131934819","wikidata":"https://www.wikidata.org/wiki/Q135390","display_name":"Biogenesis","level":3,"score":0.808146595954895},{"id":"https://openalex.org/C84982370","wikidata":"https://www.wikidata.org/wiki/Q420927","display_name":"Multiprotein complex","level":3,"score":0.7998824715614319},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.7457700967788696},{"id":"https://openalex.org/C2777576037","wikidata":"https://www.wikidata.org/wiki/Q719725","display_name":"Saccharomyces cerevisiae","level":3,"score":0.732725977897644},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6181421875953674},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.6120010614395142},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5725932121276855},{"id":"https://openalex.org/C71829478","wikidata":"https://www.wikidata.org/wiki/Q901305","display_name":"Immunoprecipitation","level":3,"score":0.5300029516220093},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5290685296058655},{"id":"https://openalex.org/C104292427","wikidata":"https://www.wikidata.org/wiki/Q899781","display_name":"Protein subunit","level":3,"score":0.4832354485988617},{"id":"https://openalex.org/C9760119","wikidata":"https://www.wikidata.org/wiki/Q841382","display_name":"Interactome","level":3,"score":0.4687255620956421},{"id":"https://openalex.org/C2779222958","wikidata":"https://www.wikidata.org/wiki/Q45422","display_name":"Yeast","level":2,"score":0.31568098068237305},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.2931842803955078},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.25073015689849854},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.24722346663475037},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000096","qualifier_name":"biosynthesis","is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000096","qualifier_name":"biosynthesis","is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000096","qualifier_name":"biosynthesis","is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/s12918-017-0442-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12918-017-0442-0","pdf_url":"https://bmcsystbiol.biomedcentral.com/track/pdf/10.1186/s12918-017-0442-0","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},{"id":"pmid:28693620","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28693620","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC systems biology","raw_type":null},{"id":"pmh:oai:HAL:hal-01560671v1","is_oa":true,"landing_page_url":"https://hal.science/hal-01560671","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Systems Biology, 2017, 11 (67), pp.1-12. &#x27E8;10.1186/s12918-017-0442-0&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:doaj.org/article:dbb9dbcd94cd493da33d92c8044d6d7a","is_oa":false,"landing_page_url":"https://doaj.org/article/dbb9dbcd94cd493da33d92c8044d6d7a","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Systems Biology, Vol 11, Iss 1, Pp 1-12 (2017)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:5504824","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5504824","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Syst Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12918-017-0442-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12918-017-0442-0","pdf_url":"https://bmcsystbiol.biomedcentral.com/track/pdf/10.1186/s12918-017-0442-0","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land","score":0.46000000834465027}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2736085254.pdf","grobid_xml":"https://content.openalex.org/works/W2736085254.grobid-xml"},"referenced_works_count":54,"referenced_works":["https://openalex.org/W107070808","https://openalex.org/W1138780706","https://openalex.org/W1783384641","https://openalex.org/W1966072209","https://openalex.org/W1973247012","https://openalex.org/W1975399897","https://openalex.org/W1976937534","https://openalex.org/W1987363726","https://openalex.org/W1989158632","https://openalex.org/W1990200948","https://openalex.org/W1990312420","https://openalex.org/W2003417494","https://openalex.org/W2006277271","https://openalex.org/W2008003969","https://openalex.org/W2016958746","https://openalex.org/W2018536290","https://openalex.org/W2026254663","https://openalex.org/W2033317613","https://openalex.org/W2037145096","https://openalex.org/W2039473152","https://openalex.org/W2040847667","https://openalex.org/W2050721857","https://openalex.org/W2051349181","https://openalex.org/W2060814542","https://openalex.org/W2068835382","https://openalex.org/W2074986735","https://openalex.org/W2082565035","https://openalex.org/W2086454943","https://openalex.org/W2096173332","https://openalex.org/W2096183628","https://openalex.org/W2097698606","https://openalex.org/W2099688794","https://openalex.org/W2109248504","https://openalex.org/W2109281577","https://openalex.org/W2110336366","https://openalex.org/W2113654464","https://openalex.org/W2116117181","https://openalex.org/W2116529046","https://openalex.org/W2117513900","https://openalex.org/W2135680486","https://openalex.org/W2136850043","https://openalex.org/W2139779649","https://openalex.org/W2145381074","https://openalex.org/W2152486860","https://openalex.org/W2159719613","https://openalex.org/W2163485494","https://openalex.org/W2166344835","https://openalex.org/W2167869241","https://openalex.org/W2217471163","https://openalex.org/W2318862985","https://openalex.org/W2395095896","https://openalex.org/W2439325218","https://openalex.org/W2554978109","https://openalex.org/W2777496335"],"related_works":["https://openalex.org/W2905294763","https://openalex.org/W2790366063","https://openalex.org/W4296250434","https://openalex.org/W2600613437","https://openalex.org/W2152546257","https://openalex.org/W2018720220","https://openalex.org/W1500663296","https://openalex.org/W4252442860","https://openalex.org/W3159731292","https://openalex.org/W2399279045"],"abstract_inverted_index":{"Large":[0],"sets":[1],"of":[2,48,73,86,157,217,245],"protein-protein":[3,67,80],"interaction":[4,62],"data":[5],"coming":[6],"either":[7],"from":[8,23,76,83,257],"biological":[9,87],"experiments":[10,88,196],"or":[11,89,225],"predictive":[12],"methods":[13],"are":[14,90,103],"available":[15],"and":[16,97,105,116,128,208],"can":[17,30,254],"be":[18,31,113,255],"combined":[19],"to":[20,44,144,150,172,221],"construct":[21],"networks":[22,63],"which":[24,69,122,130],"information":[25,43],"about":[26],"various":[27],"cell":[28],"processes":[29],"extracted.":[32],"We":[33,92],"have":[34,58,93,184],"developed":[35],"an":[36,107,124],"in":[37,51,154,170,175,197,241],"silico":[38,176],"approach":[39,234],"based":[40],"on":[41],"these":[42,145],"model":[45,212],"the":[46,52,66,71,95,98,117,155,158,163,179,186,202,228,242,246,258],"biogenesis":[47,156],"multiprotein":[49],"complexes":[50,101,159,205],"yeast":[53],"Saccharomyces":[54],"cerevisiae.":[55],"Firstly,":[56],"we":[57,147,183],"built":[59],"three":[60,74,191],"protein":[61],"by":[64,139,193],"collecting":[65],"interactions,":[68],"involved":[70,153],"subunits":[72,192,218,240],"complexes,":[75],"different":[77,84],"databases.":[78],"The":[79],"interactions":[81,188,238],"come":[82],"kinds":[85],"predicted.":[91],"chosen":[94],"elongator":[96,207],"mediator":[99,209],"head":[100],"that":[102,111,219,249],"soluble":[104,204],"exhibit":[106],"architecture":[108],"with":[109,166],"subcomplexes":[110,152],"could":[112],"functional":[114],"modules,":[115],"mitochondrial":[118],"bc":[119,230],"1":[120,231],"complex,":[121,232],"is":[123],"integral":[125],"membrane":[126,229],"complex":[127,182],"for":[129,178],"a":[131,141,214,222],"late":[132],"assembly":[133,247],"subcomplex":[134,224],"has":[135,235],"been":[136],"described.":[137],"Secondly,":[138],"applying":[140],"clustering":[142,216],"strategy":[143],"networks,":[146],"were":[148,250],"able":[149],"identify":[151],"as":[160,162],"well":[161],"proteins":[164],"interacting":[165],"each":[167],"subcomplex.":[168],"Thirdly,":[169],"order":[171],"validate":[173],"our":[174,211,233],"results":[177],"cytochrome":[180],"bc1":[181],"analysed":[185],"physical":[187],"existing":[189],"between":[190,239],"performing":[194],"immunoprecipitation":[195],"several":[198],"genetic":[199],"context.":[200],"For":[201,227],"two":[203],"(the":[206],"head),":[210],"shows":[213],"strong":[215],"belong":[220],"known":[223],"module.":[226],"suggested":[236],"new":[237],"early":[243],"steps":[244],"pathway":[248],"experimentally":[251],"confirmed.":[252],"Scripts":[253],"downloaded":[256],"site:":[259],"http://bim.igmors.u-psud.fr/isips":[260],".":[261]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1}],"updated_date":"2026-05-16T08:24:45.110214","created_date":"2025-10-10T00:00:00"}
