{"id":"https://openalex.org/W2560518943","doi":"https://doi.org/10.1186/s12918-016-0372-2","title":"Superpixel-based segmentation of muscle fibers in multi-channel microscopy","display_name":"Superpixel-based segmentation of muscle fibers in multi-channel microscopy","publication_year":2016,"publication_date":"2016-12-01","ids":{"openalex":"https://openalex.org/W2560518943","doi":"https://doi.org/10.1186/s12918-016-0372-2","mag":"2560518943","pmid":"https://pubmed.ncbi.nlm.nih.gov/28105947"},"language":"en","primary_location":{"id":"doi:10.1186/s12918-016-0372-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12918-016-0372-2","pdf_url":null,"source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://doi.org/10.1186/s12918-016-0372-2","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5091142923","display_name":"Binh P. Nguyen","orcid":"https://orcid.org/0000-0001-6203-6664"},"institutions":[{"id":"https://openalex.org/I4210126319","display_name":"Duke-NUS Medical School","ror":"https://ror.org/02j1m6098","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596","https://openalex.org/I170897317","https://openalex.org/I4210126319"]}],"countries":["SG"],"is_corresponding":true,"raw_author_name":"Binh P. Nguyen","raw_affiliation_strings":["BioSystems and Micromechanics (BioSyM) Singapore - MIT Alliance for Research and Technology, Singapore, 138602, Singapore","Centre for Computational Biology, and Program in Cancer and Stem Cell Biology, Duke-NUS Medical School, Singapore, 169857, Singapore"],"affiliations":[{"raw_affiliation_string":"BioSystems and Micromechanics (BioSyM) Singapore - MIT Alliance for Research and Technology, Singapore, 138602, Singapore","institution_ids":[]},{"raw_affiliation_string":"Centre for Computational Biology, and Program in Cancer and Stem Cell Biology, Duke-NUS Medical School, Singapore, 169857, Singapore","institution_ids":["https://openalex.org/I4210126319"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002923790","display_name":"Hans Heemskerk","orcid":null},"institutions":[{"id":"https://openalex.org/I4210126319","display_name":"Duke-NUS Medical School","ror":"https://ror.org/02j1m6098","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596","https://openalex.org/I170897317","https://openalex.org/I4210126319"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Hans Heemskerk","raw_affiliation_strings":["BioSystems and Micromechanics (BioSyM) Singapore - MIT Alliance for Research and Technology, Singapore, 138602, Singapore","Centre for Computational Biology, and Program in Cancer and Stem Cell Biology, Duke-NUS Medical School, Singapore, 169857, Singapore"],"affiliations":[{"raw_affiliation_string":"BioSystems and Micromechanics (BioSyM) Singapore - MIT Alliance for Research and Technology, Singapore, 138602, Singapore","institution_ids":[]},{"raw_affiliation_string":"Centre for Computational Biology, and Program in Cancer and Stem Cell Biology, Duke-NUS Medical School, Singapore, 169857, Singapore","institution_ids":["https://openalex.org/I4210126319"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032098186","display_name":"Peter T. C. So","orcid":"https://orcid.org/0000-0003-4698-6488"},"institutions":[{"id":"https://openalex.org/I63966007","display_name":"Massachusetts Institute of Technology","ror":"https://ror.org/042nb2s44","country_code":"US","type":"education","lineage":["https://openalex.org/I63966007"]},{"id":"https://openalex.org/I4210167254","display_name":"Singapore-MIT Alliance for Research and Technology","ror":"https://ror.org/05yb3w112","country_code":"SG","type":"education","lineage":["https://openalex.org/I4210167254"]}],"countries":["SG","US"],"is_corresponding":false,"raw_author_name":"Peter T. C. So","raw_affiliation_strings":["BioSystems and Micromechanics (BioSyM) Singapore - MIT Alliance for Research and Technology, Singapore, 138602, Singapore","Department of Mechanical Engineering, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA","BioSystems and Micromechanics (BioSyM) Singapore \u2013 MIT Alliance for Research and Technology, Singapore, 138602, Singapore"],"affiliations":[{"raw_affiliation_string":"BioSystems and Micromechanics (BioSyM) Singapore - MIT Alliance for Research and Technology, Singapore, 138602, Singapore","institution_ids":[]},{"raw_affiliation_string":"Department of Mechanical Engineering, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA","institution_ids":["https://openalex.org/I63966007"]},{"raw_affiliation_string":"BioSystems and Micromechanics (BioSyM) Singapore \u2013 MIT Alliance for Research and Technology, Singapore, 138602, Singapore","institution_ids":["https://openalex.org/I4210167254"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5031384457","display_name":"Lisa Tucker\u2010Kellogg","orcid":"https://orcid.org/0000-0002-1301-7069"},"institutions":[{"id":"https://openalex.org/I4210167254","display_name":"Singapore-MIT Alliance for Research and Technology","ror":"https://ror.org/05yb3w112","country_code":"SG","type":"education","lineage":["https://openalex.org/I4210167254"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Lisa Tucker-Kellogg","raw_affiliation_strings":["BioSystems and Micromechanics (BioSyM) Singapore - MIT Alliance for Research and Technology, Singapore, 138602, Singapore. lisa.tucker-kellogg@duke-nus.edu.sg","Centre for Computational Biology, and Program in Cancer and Stem Cell Biology, Duke-NUS Medical School, Singapore, 169857, Singapore. lisa.tucker-kellogg@duke-nus.edu.sg","BioSystems and Micromechanics (BioSyM) Singapore \u2013 MIT Alliance for Research and Technology, Singapore, 138602, Singapore"],"affiliations":[{"raw_affiliation_string":"BioSystems and Micromechanics (BioSyM) Singapore - MIT Alliance for Research and Technology, Singapore, 138602, Singapore. lisa.tucker-kellogg@duke-nus.edu.sg","institution_ids":[]},{"raw_affiliation_string":"Centre for Computational Biology, and Program in Cancer and Stem Cell Biology, Duke-NUS Medical School, Singapore, 169857, Singapore. lisa.tucker-kellogg@duke-nus.edu.sg","institution_ids":[]},{"raw_affiliation_string":"BioSystems and Micromechanics (BioSyM) Singapore \u2013 MIT Alliance for Research and Technology, Singapore, 138602, Singapore","institution_ids":["https://openalex.org/I4210167254"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5091142923"],"corresponding_institution_ids":["https://openalex.org/I4210126319"],"apc_list":null,"apc_paid":null,"fwci":9.0697,"has_fulltext":false,"cited_by_count":24,"citation_normalized_percentile":{"value":0.97346492,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"10","issue":"S5","first_page":"124","last_page":"124"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13114","display_name":"Image Processing Techniques and Applications","score":0.9941999912261963,"subfield":{"id":"https://openalex.org/subfields/2214","display_name":"Media Technology"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9911999702453613,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.8312392234802246},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6741068363189697},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5646827220916748},{"id":"https://openalex.org/keywords/tracing","display_name":"Tracing","score":0.49425411224365234},{"id":"https://openalex.org/keywords/market-segmentation","display_name":"Market segmentation","score":0.4864184856414795},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.44742822647094727},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.44375672936439514},{"id":"https://openalex.org/keywords/image-segmentation","display_name":"Image segmentation","score":0.4322688579559326},{"id":"https://openalex.org/keywords/boundary","display_name":"Boundary (topology)","score":0.42889901995658875},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1368735134601593}],"concepts":[{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.8312392234802246},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6741068363189697},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5646827220916748},{"id":"https://openalex.org/C138673069","wikidata":"https://www.wikidata.org/wiki/Q322229","display_name":"Tracing","level":2,"score":0.49425411224365234},{"id":"https://openalex.org/C125308379","wikidata":"https://www.wikidata.org/wiki/Q363057","display_name":"Market segmentation","level":2,"score":0.4864184856414795},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.44742822647094727},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.44375672936439514},{"id":"https://openalex.org/C124504099","wikidata":"https://www.wikidata.org/wiki/Q56933","display_name":"Image segmentation","level":3,"score":0.4322688579559326},{"id":"https://openalex.org/C62354387","wikidata":"https://www.wikidata.org/wiki/Q875399","display_name":"Boundary (topology)","level":2,"score":0.42889901995658875},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1368735134601593},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C162853370","wikidata":"https://www.wikidata.org/wiki/Q39809","display_name":"Marketing","level":1,"score":0.0},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002467","descriptor_name":"Cell Nucleus","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002467","descriptor_name":"Cell Nucleus","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002467","descriptor_name":"Cell Nucleus","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D032342","descriptor_name":"Muscle Cells","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D032342","descriptor_name":"Muscle Cells","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D032342","descriptor_name":"Muscle Cells","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12918-016-0372-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12918-016-0372-2","pdf_url":null,"source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},{"id":"pmid:28105947","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28105947","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC systems biology","raw_type":null},{"id":"pmh:oai:scholarbank.nus.edu.sg:10635/143352","is_oa":false,"landing_page_url":"http://scholarbank.nus.edu.sg/handle/10635/143352","pdf_url":null,"source":{"id":"https://openalex.org/S7407052290","display_name":"National University of Singapore","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Scopus","raw_type":"Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:5249035","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5249035","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Syst Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12918-016-0372-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12918-016-0372-2","pdf_url":null,"source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320698","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":10,"referenced_works":["https://openalex.org/W1490682695","https://openalex.org/W1548953334","https://openalex.org/W1969534040","https://openalex.org/W1987869189","https://openalex.org/W2081314642","https://openalex.org/W2118246710","https://openalex.org/W2132513126","https://openalex.org/W2150178435","https://openalex.org/W2168901267","https://openalex.org/W2558687840"],"related_works":["https://openalex.org/W2517104666","https://openalex.org/W2005437358","https://openalex.org/W1669643531","https://openalex.org/W2008656436","https://openalex.org/W2134924024","https://openalex.org/W2023558673","https://openalex.org/W2110230079","https://openalex.org/W1982826852","https://openalex.org/W2613186388","https://openalex.org/W1967061043"],"abstract_inverted_index":{"Our":[0],"segmentation":[1],"framework":[2],"is":[3],"flexible":[4],"and":[5,31],"provides":[6],"very":[7],"good":[8],"segmentations":[9],"of":[10,25],"multi-color":[11,36],"muscle":[12],"fibers.":[13],"We":[14],"anticipate":[15],"our":[16],"methods":[17],"will":[18],"be":[19],"useful":[20],"for":[21],"segmenting":[22],"a":[23],"variety":[24],"tissues":[26],"in":[27,32],"confetti":[28],"fluorecent":[29],"mice":[30,33],"with":[34],"similar":[35],"labels.":[37]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":12},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
