{"id":"https://openalex.org/W2193170334","doi":"https://doi.org/10.1186/s12918-016-0306-z","title":"Classification of breast cancer patients using somatic mutation profiles and machine learning approaches","display_name":"Classification of breast cancer patients using somatic mutation profiles and machine learning approaches","publication_year":2016,"publication_date":"2016-08-01","ids":{"openalex":"https://openalex.org/W2193170334","doi":"https://doi.org/10.1186/s12918-016-0306-z","mag":"2193170334","pmid":"https://pubmed.ncbi.nlm.nih.gov/27587275"},"language":"en","primary_location":{"id":"doi:10.1186/s12918-016-0306-z","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12918-016-0306-z","pdf_url":"https://bmcsystbiol.biomedcentral.com/track/pdf/10.1186/s12918-016-0306-z","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://bmcsystbiol.biomedcentral.com/track/pdf/10.1186/s12918-016-0306-z","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5034242219","display_name":"Suleyman Vural","orcid":"https://orcid.org/0000-0002-7777-5256"},"institutions":[{"id":"https://openalex.org/I59130452","display_name":"University of Nebraska Medical Center","ror":"https://ror.org/00thqtb16","country_code":"US","type":"funder","lineage":["https://openalex.org/I59130452"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Suleyman Vural","raw_affiliation_strings":["Department of Genetics, Cell Biology and Anatomy, University of Nebraska Medical Center, Omaha, NE, 68198, USA"],"affiliations":[{"raw_affiliation_string":"Department of Genetics, Cell Biology and Anatomy, University of Nebraska Medical Center, Omaha, NE, 68198, USA","institution_ids":["https://openalex.org/I59130452"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017283709","display_name":"Xiaosheng Wang","orcid":"https://orcid.org/0000-0002-7199-7093"},"institutions":[{"id":"https://openalex.org/I161716053","display_name":"China Pharmaceutical University","ror":"https://ror.org/01sfm2718","country_code":"CN","type":"education","lineage":["https://openalex.org/I161716053"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaosheng Wang","raw_affiliation_strings":["School of Basic Medicine and Clinic Pharmacy, China Pharmaceutical University, Nanjing, 211198, China"],"affiliations":[{"raw_affiliation_string":"School of Basic Medicine and Clinic Pharmacy, China Pharmaceutical University, Nanjing, 211198, China","institution_ids":["https://openalex.org/I161716053"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5050528341","display_name":"Chittibabu Guda","orcid":"https://orcid.org/0000-0002-5393-9316"},"institutions":[{"id":"https://openalex.org/I59130452","display_name":"University of Nebraska Medical Center","ror":"https://ror.org/00thqtb16","country_code":"US","type":"funder","lineage":["https://openalex.org/I59130452"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Chittibabu Guda","raw_affiliation_strings":["Bioinformatics and Systems Biology Core, University of Nebraska Medical Center, Omaha, NE, 68198, USA. babu.guda@unmc.edu","Department of Biochemistry and Molecular Biology, University of Nebraska Medical Center, Omaha, NE, 68198, USA. babu.guda@unmc.edu","Department of Genetics, Cell Biology and Anatomy, University of Nebraska Medical Center, Omaha, NE, 68198, USA. babu.guda@unmc.edu","Fred and Pamela Buffet Cancer Center, University of Nebraska Medical Center, Omaha, NE, 68198, USA. babu.guda@unmc.edu","Bioinformatics and Systems Biology Core, University of Nebraska Medical Center, Omaha, NE, 68198, USA"],"affiliations":[{"raw_affiliation_string":"Bioinformatics and Systems Biology Core, University of Nebraska Medical Center, Omaha, NE, 68198, USA. babu.guda@unmc.edu","institution_ids":[]},{"raw_affiliation_string":"Department of Biochemistry and Molecular Biology, University of Nebraska Medical Center, Omaha, NE, 68198, USA. babu.guda@unmc.edu","institution_ids":[]},{"raw_affiliation_string":"Department of Genetics, Cell Biology and Anatomy, University of Nebraska Medical Center, Omaha, NE, 68198, USA. babu.guda@unmc.edu","institution_ids":[]},{"raw_affiliation_string":"Fred and Pamela Buffet Cancer Center, University of Nebraska Medical Center, Omaha, NE, 68198, USA. babu.guda@unmc.edu","institution_ids":[]},{"raw_affiliation_string":"Bioinformatics and Systems Biology Core, University of Nebraska Medical Center, Omaha, NE, 68198, USA","institution_ids":["https://openalex.org/I59130452"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5050528341"],"corresponding_institution_ids":["https://openalex.org/I59130452"],"apc_list":null,"apc_paid":null,"fwci":2.6206,"has_fulltext":true,"cited_by_count":83,"citation_normalized_percentile":{"value":0.88467988,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"10","issue":"S3","first_page":"62","last_page":"62"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/breast-cancer","display_name":"Breast cancer","score":0.7080310583114624},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5290108323097229},{"id":"https://openalex.org/keywords/exome","display_name":"Exome","score":0.449504017829895},{"id":"https://openalex.org/keywords/germline-mutation","display_name":"Germline mutation","score":0.4479842782020569},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.44529396295547485},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.44126713275909424},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.44010475277900696},{"id":"https://openalex.org/keywords/exome-sequencing","display_name":"Exome sequencing","score":0.40943479537963867},{"id":"https://openalex.org/keywords/mutation","display_name":"Mutation","score":0.4072314202785492},{"id":"https://openalex.org/keywords/oncology","display_name":"Oncology","score":0.4030764102935791},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.35606372356414795},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3337171673774719},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.2576623558998108}],"concepts":[{"id":"https://openalex.org/C530470458","wikidata":"https://www.wikidata.org/wiki/Q128581","display_name":"Breast cancer","level":3,"score":0.7080310583114624},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5290108323097229},{"id":"https://openalex.org/C10590036","wikidata":"https://www.wikidata.org/wiki/Q417664","display_name":"Exome","level":5,"score":0.449504017829895},{"id":"https://openalex.org/C13514818","wikidata":"https://www.wikidata.org/wiki/Q5552256","display_name":"Germline mutation","level":4,"score":0.4479842782020569},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.44529396295547485},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.44126713275909424},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.44010475277900696},{"id":"https://openalex.org/C16671776","wikidata":"https://www.wikidata.org/wiki/Q5420592","display_name":"Exome sequencing","level":4,"score":0.40943479537963867},{"id":"https://openalex.org/C501734568","wikidata":"https://www.wikidata.org/wiki/Q42918","display_name":"Mutation","level":3,"score":0.4072314202785492},{"id":"https://openalex.org/C143998085","wikidata":"https://www.wikidata.org/wiki/Q162555","display_name":"Oncology","level":1,"score":0.4030764102935791},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.35606372356414795},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3337171673774719},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.2576623558998108}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12918-016-0306-z","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12918-016-0306-z","pdf_url":"https://bmcsystbiol.biomedcentral.com/track/pdf/10.1186/s12918-016-0306-z","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},{"id":"pmid:27587275","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27587275","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC systems biology","raw_type":null},{"id":"pmh:oai:digitalcommons.unmc.edu:etd-1050","is_oa":false,"landing_page_url":"https://digitalcommons.unmc.edu/etd/50","pdf_url":null,"source":{"id":"https://openalex.org/S4210227318","display_name":"Graduate Medical Education Research Journal","issn_l":"2578-6091","issn":["2578-6091","2578-6105"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Theses & Dissertations","raw_type":"text"},{"id":"pmh:oai:pubmedcentral.nih.gov:5009820","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5009820","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Syst Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12918-016-0306-z","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12918-016-0306-z","pdf_url":"https://bmcsystbiol.biomedcentral.com/track/pdf/10.1186/s12918-016-0306-z","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.6100000143051147}],"awards":[{"id":"https://openalex.org/G1180339281","display_name":null,"funder_award_id":"P30CA036727","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2393445062","display_name":null,"funder_award_id":"P20GM103427","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3180156524","display_name":null,"funder_award_id":"P20GM10342","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3611247453","display_name":null,"funder_award_id":"R01GM","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4830224235","display_name":null,"funder_award_id":"5P30CA036727","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5576961021","display_name":null,"funder_award_id":"P30CA03672","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6538235392","display_name":null,"funder_award_id":"1R01GM086533-01A1","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6714395206","display_name":null,"funder_award_id":"2P20GM103427","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8402232963","display_name":null,"funder_award_id":"CA036727","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8936303055","display_name":null,"funder_award_id":"GM103427","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2193170334.pdf","grobid_xml":"https://content.openalex.org/works/W2193170334.grobid-xml"},"referenced_works_count":49,"referenced_works":["https://openalex.org/W179179905","https://openalex.org/W1546709038","https://openalex.org/W1966331733","https://openalex.org/W1987971958","https://openalex.org/W1992505028","https://openalex.org/W1998620046","https://openalex.org/W2005895632","https://openalex.org/W2009720434","https://openalex.org/W2013322816","https://openalex.org/W2021456586","https://openalex.org/W2044702943","https://openalex.org/W2050328564","https://openalex.org/W2050818040","https://openalex.org/W2062135638","https://openalex.org/W2073922677","https://openalex.org/W2074456530","https://openalex.org/W2086072858","https://openalex.org/W2089041897","https://openalex.org/W2097255042","https://openalex.org/W2099139312","https://openalex.org/W2101412130","https://openalex.org/W2108986829","https://openalex.org/W2110065044","https://openalex.org/W2118151336","https://openalex.org/W2118886215","https://openalex.org/W2121906867","https://openalex.org/W2122111042","https://openalex.org/W2122732537","https://openalex.org/W2130410032","https://openalex.org/W2131994307","https://openalex.org/W2133990480","https://openalex.org/W2135029798","https://openalex.org/W2136787567","https://openalex.org/W2138520587","https://openalex.org/W2148969914","https://openalex.org/W2149031002","https://openalex.org/W2155943701","https://openalex.org/W2157840751","https://openalex.org/W2160995259","https://openalex.org/W2164457061","https://openalex.org/W2164641162","https://openalex.org/W2167917002","https://openalex.org/W2259802687","https://openalex.org/W2582743722","https://openalex.org/W2911964244","https://openalex.org/W3143596294","https://openalex.org/W4230962320","https://openalex.org/W4234935126","https://openalex.org/W6630092459"],"related_works":["https://openalex.org/W2093932542","https://openalex.org/W2043256480","https://openalex.org/W2772505697","https://openalex.org/W3083501552","https://openalex.org/W2400191746","https://openalex.org/W1983406990","https://openalex.org/W2094815267","https://openalex.org/W2484239316","https://openalex.org/W3024198590","https://openalex.org/W4367844067"],"abstract_inverted_index":{"This":[0,45],"study":[1,46],"demonstrates":[2],"that":[3],"gene":[4],"mutation":[5,43,54],"profiles":[6],"can":[7,68],"be":[8,70],"effectively":[9],"used":[10],"with":[11],"unsupervised":[12],"machine-learning":[13],"methods":[14],"to":[15,57,72],"identify":[16,58],"clinically":[17],"distinguishable":[18],"breast":[19,61],"cancer":[20,36,62,74],"subgroups.":[21],"The":[22],"classification":[23],"model":[24],"developed":[25],"in":[26],"this":[27,65],"method":[28],"could":[29],"provide":[30],"a":[31],"reasonable":[32],"prediction":[33],"of":[34,51],"the":[35,48],"patients'":[37],"stage":[38],"solely":[39],"based":[40],"on":[41],"their":[42],"profiles.":[44],"represents":[47],"first":[49],"use":[50],"only":[52],"somatic":[53],"profile":[55],"data":[56],"and":[59,64],"predict":[60],"subgroups":[63],"generic":[66],"methodology":[67],"also":[69],"applied":[71],"other":[73],"datasets.":[75]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":10},{"year":2024,"cited_by_count":10},{"year":2023,"cited_by_count":14},{"year":2022,"cited_by_count":12},{"year":2021,"cited_by_count":9},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":7},{"year":2017,"cited_by_count":7},{"year":2016,"cited_by_count":1}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
