{"id":"https://openalex.org/W2474648852","doi":"https://doi.org/10.1186/s12918-016-0288-x","title":"Where next for the reproducibility agenda in computational biology?","display_name":"Where next for the reproducibility agenda in computational biology?","publication_year":2016,"publication_date":"2016-07-15","ids":{"openalex":"https://openalex.org/W2474648852","doi":"https://doi.org/10.1186/s12918-016-0288-x","mag":"2474648852","pmid":"https://pubmed.ncbi.nlm.nih.gov/27422148"},"language":"en","primary_location":{"id":"doi:10.1186/s12918-016-0288-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12918-016-0288-x","pdf_url":"https://bmcsystbiol.biomedcentral.com/track/pdf/10.1186/s12918-016-0288-x","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://bmcsystbiol.biomedcentral.com/track/pdf/10.1186/s12918-016-0288-x","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5065389512","display_name":"Joanna Lewis","orcid":"https://orcid.org/0000-0001-6475-1872"},"institutions":[{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Joanna Lewis","raw_affiliation_strings":["Centre for Maths and Physics in the Life Sciences and Experimental Biology, University College London, Physics Building, Gower Place, London, WC1E 6BT, UK. joanna.lewis@imperial.ac.uk","NIHR Health Protection Research Unit in Modelling Methodology, Department of Infectious Disease Epidemiology, Imperial College London, St Mary's Campus, Norfolk Place, London, W2 1PG, UK. joanna.lewis@imperial.ac.uk","Centre for Maths and Physics in the Life Sciences and Experimental Biology, University College London, Physics Building, Gower Place, London, WC1E 6BT, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Maths and Physics in the Life Sciences and Experimental Biology, University College London, Physics Building, Gower Place, London, WC1E 6BT, UK. joanna.lewis@imperial.ac.uk","institution_ids":[]},{"raw_affiliation_string":"NIHR Health Protection Research Unit in Modelling Methodology, Department of Infectious Disease Epidemiology, Imperial College London, St Mary's Campus, Norfolk Place, London, W2 1PG, UK. joanna.lewis@imperial.ac.uk","institution_ids":[]},{"raw_affiliation_string":"Centre for Maths and Physics in the Life Sciences and Experimental Biology, University College London, Physics Building, Gower Place, London, WC1E 6BT, UK","institution_ids":["https://openalex.org/I45129253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091599023","display_name":"Charles E. Breeze","orcid":"https://orcid.org/0000-0002-5294-915X"},"institutions":[{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Charles E. Breeze","raw_affiliation_strings":["UCL Cancer Institute, University College London, 72 Huntley St, London, WC1E 6DD, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"UCL Cancer Institute, University College London, 72 Huntley St, London, WC1E 6DD, UK","institution_ids":["https://openalex.org/I45129253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077961117","display_name":"Jane Charlesworth","orcid":"https://orcid.org/0000-0001-9759-9838"},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Jane Charlesworth","raw_affiliation_strings":["Department of Genetics, University of Cambridge, Downing Street, Cambridge, CB2 3EH, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genetics, University of Cambridge, Downing Street, Cambridge, CB2 3EH, UK","institution_ids":["https://openalex.org/I241749"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074871064","display_name":"Oliver J. Maclaren","orcid":"https://orcid.org/0000-0002-3982-4539"},"institutions":[{"id":"https://openalex.org/I154130895","display_name":"University of Auckland","ror":"https://ror.org/03b94tp07","country_code":"NZ","type":"education","lineage":["https://openalex.org/I154130895"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"Oliver J. Maclaren","raw_affiliation_strings":["Department of Engineering Science, University of Auckland, Auckland, 1142, New Zealand","Department of Mathematics, University of Auckland, Auckland, 1142, New Zealand"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Engineering Science, University of Auckland, Auckland, 1142, New Zealand","institution_ids":["https://openalex.org/I154130895"]},{"raw_affiliation_string":"Department of Mathematics, University of Auckland, Auckland, 1142, New Zealand","institution_ids":["https://openalex.org/I154130895"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5027917052","display_name":"Jonathan Cooper","orcid":"https://orcid.org/0000-0001-6009-3542"},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Jonathan Cooper","raw_affiliation_strings":["Department of Computer Science, University of Oxford, Wolfson Building, Parks Road, Oxford, OX1 3QD, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Oxford, Wolfson Building, Parks Road, Oxford, OX1 3QD, UK","institution_ids":["https://openalex.org/I40120149"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5065389512"],"corresponding_institution_ids":["https://openalex.org/I45129253"],"apc_list":null,"apc_paid":null,"fwci":10.419,"has_fulltext":true,"cited_by_count":28,"citation_normalized_percentile":{"value":0.97670553,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"10","issue":"1","first_page":"52","last_page":"52"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.8149999976158142,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.8149999976158142,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.05169999971985817,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.02019999921321869,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7025504112243652},{"id":"https://openalex.org/keywords/reproducibility","display_name":"Reproducibility","score":0.6646268367767334},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5669602751731873},{"id":"https://openalex.org/keywords/equivalence","display_name":"Equivalence (formal languages)","score":0.5158347487449646},{"id":"https://openalex.org/keywords/computational-model","display_name":"Computational model","score":0.5083786845207214},{"id":"https://openalex.org/keywords/incentive","display_name":"Incentive","score":0.469350665807724},{"id":"https://openalex.org/keywords/management-science","display_name":"Management science","score":0.4470767080783844},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.14348340034484863},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.13619652390480042},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.08469069004058838}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7025504112243652},{"id":"https://openalex.org/C9893847","wikidata":"https://www.wikidata.org/wiki/Q1425625","display_name":"Reproducibility","level":2,"score":0.6646268367767334},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5669602751731873},{"id":"https://openalex.org/C2780069185","wikidata":"https://www.wikidata.org/wiki/Q7977945","display_name":"Equivalence (formal languages)","level":2,"score":0.5158347487449646},{"id":"https://openalex.org/C66024118","wikidata":"https://www.wikidata.org/wiki/Q1122506","display_name":"Computational model","level":2,"score":0.5083786845207214},{"id":"https://openalex.org/C29122968","wikidata":"https://www.wikidata.org/wiki/Q1414816","display_name":"Incentive","level":2,"score":0.469350665807724},{"id":"https://openalex.org/C539667460","wikidata":"https://www.wikidata.org/wiki/Q2414942","display_name":"Management science","level":1,"score":0.4470767080783844},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.14348340034484863},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.13619652390480042},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.08469069004058838},{"id":"https://openalex.org/C175444787","wikidata":"https://www.wikidata.org/wiki/Q39072","display_name":"Microeconomics","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C118615104","wikidata":"https://www.wikidata.org/wiki/Q121416","display_name":"Discrete mathematics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1186/s12918-016-0288-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12918-016-0288-x","pdf_url":"https://bmcsystbiol.biomedcentral.com/track/pdf/10.1186/s12918-016-0288-x","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},{"id":"pmid:27422148","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27422148","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC systems biology","raw_type":null},{"id":"pmh:oai:eprints.ucl.ac.uk.OAI2:1518090","is_oa":false,"landing_page_url":"https://discovery.ucl.ac.uk/id/eprint/1518090/","pdf_url":null,"source":{"id":"https://openalex.org/S4306400024","display_name":"UCL Discovery (University College London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I45129253","host_organization_name":"University College London","host_organization_lineage":["https://openalex.org/I45129253"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"   BMC Systems Biology , 10     , Article 52. (2016)      ","raw_type":"Article"},{"id":"pmh:oai:ora.ox.ac.uk:uuid:eee51def-324c-4082-b5e4-31f0c424fcae","is_oa":true,"landing_page_url":"https://ora.ox.ac.uk/objects/uuid:eee51def-324c-4082-b5e4-31f0c424fcae","pdf_url":null,"source":{"id":"https://openalex.org/S4306402636","display_name":"Oxford University Research Archive (ORA) (University of Oxford)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I40120149","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/I40120149"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Symplectic Elements at Oxford","raw_type":"Journal article"},{"id":"pmh:oai:pubmedcentral.nih.gov:4946111","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4946111","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Syst Biol","raw_type":"Text"},{"id":"pmh:oai:researchspace.auckland.ac.nz:2292/44143","is_oa":true,"landing_page_url":"https://hdl.handle.net/2292/44143","pdf_url":null,"source":{"id":"https://openalex.org/S7407055463","display_name":"ResearchSpace (University of Auckland)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I154130895","host_organization_name":"University of Auckland","host_organization_lineage":["https://openalex.org/I154130895"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Journal Article"},{"id":"pmh:oai:spiral.imperial.ac.uk:10044/1/33680","is_oa":true,"landing_page_url":"http://hdl.handle.net/10044/1/33680","pdf_url":null,"source":{"id":"https://openalex.org/S4306401396","display_name":"Spiral (Imperial College London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I47508984","host_organization_name":"Imperial College London","host_organization_lineage":["https://openalex.org/I47508984"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1186/s12918-016-0288-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12918-016-0288-x","pdf_url":"https://bmcsystbiol.biomedcentral.com/track/pdf/10.1186/s12918-016-0288-x","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1326582021","display_name":null,"funder_award_id":"EP/I017909","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G2063771110","display_name":null,"funder_award_id":"HPRU-2012-10080","funder_id":"https://openalex.org/F4320319990","funder_display_name":"National Institute for Health and Care Research"},{"id":"https://openalex.org/G3024511915","display_name":"A new approach to Science at the Life Sciences Interface","funder_award_id":"EP/I017909/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G5518562339","display_name":null,"funder_award_id":"BB/K017578/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G6428962470","display_name":null,"funder_award_id":"EP/I017909/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G767517371","display_name":null,"funder_award_id":"HPRU-2012-10080","funder_id":"https://openalex.org/F4320321067","funder_display_name":"Public Health England"},{"id":"https://openalex.org/G7793616676","display_name":"A multidisciplinary approach to studying crypt-villus homeostasis and regeneration in the intestinal epithelium","funder_award_id":"BB/K017578/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G8948247426","display_name":null,"funder_award_id":"HPRU-2012-10080","funder_id":"https://openalex.org/F4320320283","funder_display_name":"Imperial College London"}],"funders":[{"id":"https://openalex.org/F4320308943","display_name":"Microsoft Research","ror":"https://ror.org/00d0nc645"},{"id":"https://openalex.org/F4320318095","display_name":"National Institute for Health Research Health Protection Research Unit","ror":null},{"id":"https://openalex.org/F4320319990","display_name":"National Institute for Health and Care Research","ror":"https://ror.org/0187kwz08"},{"id":"https://openalex.org/F4320320283","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10"},{"id":"https://openalex.org/F4320321067","display_name":"Public Health England","ror":"https://ror.org/00vbvha87"},{"id":"https://openalex.org/F4320326570","display_name":"Software Sustainability Institute","ror":"https://ror.org/0455awd29"},{"id":"https://openalex.org/F4320332167","display_name":"Directorate for Biological Sciences","ror":"https://ror.org/001xhss06"},{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2474648852.pdf","grobid_xml":"https://content.openalex.org/works/W2474648852.grobid-xml"},"referenced_works_count":72,"referenced_works":["https://openalex.org/W584827952","https://openalex.org/W1520411860","https://openalex.org/W1545319692","https://openalex.org/W1574680346","https://openalex.org/W1583240815","https://openalex.org/W1912338927","https://openalex.org/W1968240086","https://openalex.org/W1969709265","https://openalex.org/W1971060829","https://openalex.org/W1972581523","https://openalex.org/W1975385846","https://openalex.org/W1991543373","https://openalex.org/W1991909246","https://openalex.org/W1996198135","https://openalex.org/W2001719095","https://openalex.org/W2002492372","https://openalex.org/W2006933206","https://openalex.org/W2007756405","https://openalex.org/W2009111228","https://openalex.org/W2016462601","https://openalex.org/W2019619926","https://openalex.org/W2020561965","https://openalex.org/W2026062398","https://openalex.org/W2026532911","https://openalex.org/W2028713366","https://openalex.org/W2030620341","https://openalex.org/W2034921036","https://openalex.org/W2035251626","https://openalex.org/W2036318837","https://openalex.org/W2039766412","https://openalex.org/W2049434311","https://openalex.org/W2050554833","https://openalex.org/W2061939373","https://openalex.org/W2072327049","https://openalex.org/W2074972885","https://openalex.org/W2088586179","https://openalex.org/W2092124742","https://openalex.org/W2098936704","https://openalex.org/W2112260438","https://openalex.org/W2113777491","https://openalex.org/W2122028584","https://openalex.org/W2123269459","https://openalex.org/W2123783513","https://openalex.org/W2124985265","https://openalex.org/W2130126144","https://openalex.org/W2131966673","https://openalex.org/W2136146907","https://openalex.org/W2136482257","https://openalex.org/W2147186284","https://openalex.org/W2150586932","https://openalex.org/W2150908245","https://openalex.org/W2154268795","https://openalex.org/W2157061992","https://openalex.org/W2160420391","https://openalex.org/W2160697532","https://openalex.org/W2161437109","https://openalex.org/W2161645441","https://openalex.org/W2165944832","https://openalex.org/W2166885321","https://openalex.org/W2170230954","https://openalex.org/W2201412696","https://openalex.org/W2270443308","https://openalex.org/W2272546316","https://openalex.org/W2296335794","https://openalex.org/W2342082360","https://openalex.org/W2586887466","https://openalex.org/W3113043731","https://openalex.org/W3120740533","https://openalex.org/W3123868826","https://openalex.org/W4242395378","https://openalex.org/W4285719527","https://openalex.org/W4399638975"],"related_works":["https://openalex.org/W2413717610","https://openalex.org/W1973270181","https://openalex.org/W2417696084","https://openalex.org/W2368782778","https://openalex.org/W2087830269","https://openalex.org/W3106281778","https://openalex.org/W2003643616","https://openalex.org/W638612878","https://openalex.org/W4324138256","https://openalex.org/W2140154150"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,39],"concept":[2],"of":[3,8,15,30,41,50,60,63,85,105,123,136,141,174,181,200],"reproducibility":[4,40,62,86,180,205],"is":[5,184],"a":[6,142,198],"foundation":[7],"the":[9,13,21,57,61,102,121,128,134,138,148,172,179],"scientific":[10],"method.":[11],"With":[12],"arrival":[14],"fast":[16],"and":[17,37,109,111,115,147,153,162,192,213,227],"powerful":[18],"computers":[19],"over":[20],"last":[22],"few":[23],"decades,":[24],"there":[25],"has":[26,44],"been":[27,45],"an":[28],"explosion":[29],"results":[31,43,163],"based":[32],"on":[33],"complex":[34],"computational":[35,91,106,182,207],"analyses":[36,108],"simulations.":[38],"these":[42],"addressed":[46],"mainly":[47],"in":[48,90,206],"terms":[49],"exact":[51],"replicability":[52],"or":[53,68],"numerical":[54],"equivalence,":[55],"ignoring":[56],"wider":[58],"issue":[59],"conclusions":[64],"through":[65,209],"equivalent,":[66],"extended":[67],"alternative":[69],"methods.":[70],"RESULTS:":[71],"We":[72,132,195],"use":[73,122],"case":[74],"studies":[75],"from":[76,189],"our":[77],"own":[78],"research":[79,130,183,214,218],"experience":[80],"to":[81,100,126,144,221],"illustrate":[82],"how":[83],"concepts":[84],"might":[87],"be":[88,145],"applied":[89],"biology.":[92],"Several":[93],"fields":[94],"have":[95],"developed":[96],"'minimum":[97],"information'":[98],"checklists":[99],"support":[101],"full":[103],"reporting":[104],"simulations,":[107],"results,":[110],"standardised":[112],"data":[113],"formats":[114],"model":[116],"description":[117],"languages":[118],"can":[119],"facilitate":[120],"multiple":[124],"systems":[125],"address":[127],"same":[129],"question.":[131],"note":[133],"importance":[135],"defining":[137],"key":[139],"features":[140],"result":[143],"reproduced,":[146],"expected":[149],"agreement":[150],"between":[151],"original":[152],"subsequent":[154],"results.":[155],"Dynamic,":[156],"updatable":[157],"tools":[158],"for":[159,203],"publishing":[160],"methods":[161],"are":[164],"becoming":[165],"increasingly":[166],"common,":[167],"but":[168,186],"sometimes":[169],"come":[170],"at":[171],"cost":[173],"clear":[175],"communication.":[176],"In":[177],"general,":[178],"improving":[185,204],"would":[187],"benefit":[188],"additional":[190],"resources":[191],"incentives.":[193],"CONCLUSIONS:":[194],"conclude":[196],"with":[197],"series":[199],"linked":[201],"recommendations":[202],"biology":[208],"communication,":[210],"policy,":[211],"education":[212],"practice.":[215],"More":[216],"reproducible":[217],"will":[219],"lead":[220],"higher":[222],"quality":[223],"conclusions,":[224],"deeper":[225],"understanding":[226],"more":[228],"valuable":[229],"knowledge.":[230]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":4}],"updated_date":"2026-04-29T09:16:38.111599","created_date":"2025-10-10T00:00:00"}