{"id":"https://openalex.org/W2230399809","doi":"https://doi.org/10.1186/s12918-015-0246-z","title":"UbiSite: incorporating two-layered machine learning method with substrate motifs to predict ubiquitin-conjugation site on lysines","display_name":"UbiSite: incorporating two-layered machine learning method with substrate motifs to predict ubiquitin-conjugation site on lysines","publication_year":2016,"publication_date":"2016-01-11","ids":{"openalex":"https://openalex.org/W2230399809","doi":"https://doi.org/10.1186/s12918-015-0246-z","mag":"2230399809","pmid":"https://pubmed.ncbi.nlm.nih.gov/26818456"},"language":"en","primary_location":{"id":"doi:10.1186/s12918-015-0246-z","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12918-015-0246-z","pdf_url":"https://bmcsystbiol.biomedcentral.com/track/pdf/10.1186/s12918-015-0246-z","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://bmcsystbiol.biomedcentral.com/track/pdf/10.1186/s12918-015-0246-z","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5022839686","display_name":"Chien\u2010Hsun Huang","orcid":"https://orcid.org/0000-0003-2268-1161"},"institutions":[{"id":"https://openalex.org/I99908691","display_name":"Yuan Ze University","ror":"https://ror.org/01fv1ds98","country_code":"TW","type":"education","lineage":["https://openalex.org/I99908691"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Chien-Hsun Huang","raw_affiliation_strings":["Department of Computer Science and Engineering, Yuan Ze University, Taoyuan, 320, Taiwan. lithsunh@gmail.com","Ministry of Health & Welfare, Tao-Yuan Hospital, Taoyuan, 320, Taiwan. lithsunh@gmail.com","Department of Computer Science and Engineering, Yuan Ze University, Taoyuan, 320, Taiwan"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Yuan Ze University, Taoyuan, 320, Taiwan. lithsunh@gmail.com","institution_ids":[]},{"raw_affiliation_string":"Ministry of Health & Welfare, Tao-Yuan Hospital, Taoyuan, 320, Taiwan. lithsunh@gmail.com","institution_ids":[]},{"raw_affiliation_string":"Department of Computer Science and Engineering, Yuan Ze University, Taoyuan, 320, Taiwan","institution_ids":["https://openalex.org/I99908691"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069832396","display_name":"Min-Gang Su","orcid":null},"institutions":[{"id":"https://openalex.org/I99908691","display_name":"Yuan Ze University","ror":"https://ror.org/01fv1ds98","country_code":"TW","type":"education","lineage":["https://openalex.org/I99908691"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Min-Gang Su","raw_affiliation_strings":["Department of Computer Science and Engineering, Yuan Ze University, Taoyuan, 320, Taiwan. migon229@gmail.com","Department of Computer Science and Engineering, Yuan Ze University, Taoyuan, 320, Taiwan"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Yuan Ze University, Taoyuan, 320, Taiwan. migon229@gmail.com","institution_ids":[]},{"raw_affiliation_string":"Department of Computer Science and Engineering, Yuan Ze University, Taoyuan, 320, Taiwan","institution_ids":["https://openalex.org/I99908691"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072614793","display_name":"Hui\u2010Ju Kao","orcid":null},"institutions":[{"id":"https://openalex.org/I99908691","display_name":"Yuan Ze University","ror":"https://ror.org/01fv1ds98","country_code":"TW","type":"education","lineage":["https://openalex.org/I99908691"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Hui-Ju Kao","raw_affiliation_strings":["Department of Computer Science and Engineering, Yuan Ze University, Taoyuan, 320, Taiwan. rururachel311@gmail.com","Department of Computer Science and Engineering, Yuan Ze University, Taoyuan, 320, Taiwan"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Yuan Ze University, Taoyuan, 320, Taiwan. rururachel311@gmail.com","institution_ids":[]},{"raw_affiliation_string":"Department of Computer Science and Engineering, Yuan Ze University, Taoyuan, 320, Taiwan","institution_ids":["https://openalex.org/I99908691"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062800975","display_name":"Jhih-Hua Jhong","orcid":"https://orcid.org/0000-0001-6158-5207"},"institutions":[{"id":"https://openalex.org/I99908691","display_name":"Yuan Ze University","ror":"https://ror.org/01fv1ds98","country_code":"TW","type":"education","lineage":["https://openalex.org/I99908691"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Jhih-Hua Jhong","raw_affiliation_strings":["Department of Computer Science and Engineering, Yuan Ze University, Taoyuan, 320, Taiwan. euphoria5270@gmail.com","Department of Computer Science and Engineering, Yuan Ze University, Taoyuan, 320, Taiwan"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Yuan Ze University, Taoyuan, 320, Taiwan. euphoria5270@gmail.com","institution_ids":[]},{"raw_affiliation_string":"Department of Computer Science and Engineering, Yuan Ze University, Taoyuan, 320, Taiwan","institution_ids":["https://openalex.org/I99908691"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034954530","display_name":"Shun\u2010Long Weng","orcid":null},"institutions":[{"id":"https://openalex.org/I2802753785","display_name":"Mackay Memorial Hospital","ror":"https://ror.org/015b6az38","country_code":"TW","type":"healthcare","lineage":["https://openalex.org/I2802753785"]}],"countries":["TW"],"is_corresponding":true,"raw_author_name":"Shun-Long Weng","raw_affiliation_strings":["Department of Medicine, Mackay Medical College, New Taipei City, 252, Taiwan. 4467@mmh.org.tw","Department of Obstetrics and Gynecology, Hsinchu Mackay Memorial Hospital, Hsin-Chu, 300, Taiwan. 4467@mmh.org.tw","Mackay Junior College of Medicine, Nursing and Management , Taipei, 112, Taiwan. 4467@mmh.org.tw","Department of Obstetrics and Gynecology, Hsinchu Mackay Memorial Hospital, Hsin-Chu, 300, Taiwan"],"affiliations":[{"raw_affiliation_string":"Department of Medicine, Mackay Medical College, New Taipei City, 252, Taiwan. 4467@mmh.org.tw","institution_ids":[]},{"raw_affiliation_string":"Department of Obstetrics and Gynecology, Hsinchu Mackay Memorial Hospital, Hsin-Chu, 300, Taiwan. 4467@mmh.org.tw","institution_ids":[]},{"raw_affiliation_string":"Mackay Junior College of Medicine, Nursing and Management , Taipei, 112, Taiwan. 4467@mmh.org.tw","institution_ids":[]},{"raw_affiliation_string":"Department of Obstetrics and Gynecology, Hsinchu Mackay Memorial Hospital, Hsin-Chu, 300, Taiwan","institution_ids":["https://openalex.org/I2802753785"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5045675277","display_name":"Tzong-Yi Lee","orcid":"https://orcid.org/0000-0001-8475-7868"},"institutions":[{"id":"https://openalex.org/I99908691","display_name":"Yuan Ze University","ror":"https://ror.org/01fv1ds98","country_code":"TW","type":"education","lineage":["https://openalex.org/I99908691"]}],"countries":["TW"],"is_corresponding":true,"raw_author_name":"Tzong-Yi Lee","raw_affiliation_strings":["Department of Computer Science and Engineering, Yuan Ze University, Taoyuan, 320, Taiwan. francis@saturn.yzu.edu.tw","Innovation Center for Big Data and Digital Convergence, Yuan Ze University, Taoyuan, 320, Taiwan. francis@saturn.yzu.edu.tw","Innovation Center for Big Data and Digital Convergence, Yuan Ze University, Taoyuan, 320, Taiwan"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Yuan Ze University, Taoyuan, 320, Taiwan. francis@saturn.yzu.edu.tw","institution_ids":[]},{"raw_affiliation_string":"Innovation Center for Big Data and Digital Convergence, Yuan Ze University, Taoyuan, 320, Taiwan. francis@saturn.yzu.edu.tw","institution_ids":[]},{"raw_affiliation_string":"Innovation Center for Big Data and Digital Convergence, Yuan Ze University, Taoyuan, 320, Taiwan","institution_ids":["https://openalex.org/I99908691"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5034954530","https://openalex.org/A5045675277"],"corresponding_institution_ids":["https://openalex.org/I2802753785","https://openalex.org/I99908691"],"apc_list":null,"apc_paid":null,"fwci":3.6551,"has_fulltext":true,"cited_by_count":54,"citation_normalized_percentile":{"value":0.93016621,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"10","issue":"S1","first_page":"6","last_page":"6"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11041","display_name":"Ubiquitin and proteasome pathways","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11041","display_name":"Ubiquitin and proteasome pathways","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12505","display_name":"Peptidase Inhibition and Analysis","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ubiquitin","display_name":"Ubiquitin","score":0.830856204032898},{"id":"https://openalex.org/keywords/ubiquitin-ligase","display_name":"Ubiquitin ligase","score":0.6131998896598816},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.5485098361968994},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.5183709263801575},{"id":"https://openalex.org/keywords/proteome","display_name":"Proteome","score":0.46695077419281006},{"id":"https://openalex.org/keywords/lysine","display_name":"Lysine","score":0.4282418191432953},{"id":"https://openalex.org/keywords/ubiquitins","display_name":"Ubiquitins","score":0.4250476658344269},{"id":"https://openalex.org/keywords/amino-acid","display_name":"Amino acid","score":0.41892045736312866},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.415244996547699},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.37924885749816895},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2710707485675812}],"concepts":[{"id":"https://openalex.org/C25602115","wikidata":"https://www.wikidata.org/wiki/Q407111","display_name":"Ubiquitin","level":3,"score":0.830856204032898},{"id":"https://openalex.org/C134459356","wikidata":"https://www.wikidata.org/wiki/Q4274835","display_name":"Ubiquitin ligase","level":4,"score":0.6131998896598816},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.5485098361968994},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.5183709263801575},{"id":"https://openalex.org/C104397665","wikidata":"https://www.wikidata.org/wiki/Q860947","display_name":"Proteome","level":2,"score":0.46695077419281006},{"id":"https://openalex.org/C2776016237","wikidata":"https://www.wikidata.org/wiki/Q178430","display_name":"Lysine","level":3,"score":0.4282418191432953},{"id":"https://openalex.org/C2911199164","wikidata":"https://www.wikidata.org/wiki/Q407111","display_name":"Ubiquitins","level":5,"score":0.4250476658344269},{"id":"https://openalex.org/C515207424","wikidata":"https://www.wikidata.org/wiki/Q8066","display_name":"Amino acid","level":2,"score":0.41892045736312866},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.415244996547699},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.37924885749816895},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2710707485675812},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008239","descriptor_name":"Lysine","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008239","descriptor_name":"Lysine","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008239","descriptor_name":"Lysine","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D025801","descriptor_name":"Ubiquitin","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D025801","descriptor_name":"Ubiquitin","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D025801","descriptor_name":"Ubiquitin","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D054875","descriptor_name":"Ubiquitination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054875","descriptor_name":"Ubiquitination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054875","descriptor_name":"Ubiquitination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1186/s12918-015-0246-z","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12918-015-0246-z","pdf_url":"https://bmcsystbiol.biomedcentral.com/track/pdf/10.1186/s12918-015-0246-z","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},{"id":"pmid:26818456","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26818456","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC systems biology","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:4895383","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4895383","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Syst Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12918-015-0246-z","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12918-015-0246-z","pdf_url":"https://bmcsystbiol.biomedcentral.com/track/pdf/10.1186/s12918-015-0246-z","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Reduced inequalities","id":"https://metadata.un.org/sdg/10","score":0.550000011920929},{"display_name":"Peace, Justice and strong institutions","id":"https://metadata.un.org/sdg/16","score":0.46000000834465027}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2230399809.pdf","grobid_xml":"https://content.openalex.org/works/W2230399809.grobid-xml"},"referenced_works_count":62,"referenced_works":["https://openalex.org/W1568400197","https://openalex.org/W1970039616","https://openalex.org/W1970899710","https://openalex.org/W1979408355","https://openalex.org/W1984537356","https://openalex.org/W1988281953","https://openalex.org/W1999212541","https://openalex.org/W2003204068","https://openalex.org/W2004250476","https://openalex.org/W2008798771","https://openalex.org/W2008807736","https://openalex.org/W2029093937","https://openalex.org/W2034890309","https://openalex.org/W2048793518","https://openalex.org/W2050043175","https://openalex.org/W2053502852","https://openalex.org/W2056775476","https://openalex.org/W2064639714","https://openalex.org/W2075319133","https://openalex.org/W2080221075","https://openalex.org/W2080553628","https://openalex.org/W2082106887","https://openalex.org/W2083665788","https://openalex.org/W2086831875","https://openalex.org/W2091352656","https://openalex.org/W2097606916","https://openalex.org/W2098376021","https://openalex.org/W2101745615","https://openalex.org/W2103305337","https://openalex.org/W2104804534","https://openalex.org/W2109553965","https://openalex.org/W2110181121","https://openalex.org/W2111705855","https://openalex.org/W2116062594","https://openalex.org/W2116400300","https://openalex.org/W2119185411","https://openalex.org/W2129137060","https://openalex.org/W2130277691","https://openalex.org/W2130479394","https://openalex.org/W2133797106","https://openalex.org/W2134095164","https://openalex.org/W2134129243","https://openalex.org/W2134873394","https://openalex.org/W2141818629","https://openalex.org/W2142479026","https://openalex.org/W2143538182","https://openalex.org/W2144579449","https://openalex.org/W2145786566","https://openalex.org/W2148830285","https://openalex.org/W2149376055","https://openalex.org/W2152084880","https://openalex.org/W2152339342","https://openalex.org/W2153187042","https://openalex.org/W2153635508","https://openalex.org/W2154173127","https://openalex.org/W2156822612","https://openalex.org/W2158266834","https://openalex.org/W2158714788","https://openalex.org/W2165618529","https://openalex.org/W2166440816","https://openalex.org/W2166987747","https://openalex.org/W2321779592"],"related_works":["https://openalex.org/W1970861248","https://openalex.org/W2102368462","https://openalex.org/W2054919679","https://openalex.org/W2016556888","https://openalex.org/W3110810129","https://openalex.org/W2007249806","https://openalex.org/W3195663446","https://openalex.org/W2040788846","https://openalex.org/W2043590168","https://openalex.org/W94091198"],"abstract_inverted_index":{"The":[0],"independent":[1],"testing":[2],"result":[3],"indicated":[4],"the":[5,12,30,53],"effectiveness":[6],"of":[7,14,58,61],"incorporating":[8],"MDDLogo-identified":[9],"motifs":[10],"into":[11],"prediction":[13],"ubiquitylation":[15,62],"sites.":[16],"In":[17],"order":[18],"to":[19,23,66],"provide":[20,55],"meaningful":[21],"assistance":[22],"researchers":[24],"interested":[25],"in":[26,52],"large-scale":[27],"ubiquitinome":[28],"data,":[29],"two-layered":[31],"SVM":[32],"model":[33],"has":[34],"been":[35],"implemented":[36],"onto":[37],"a":[38,56],"web-based":[39],"system":[40],"(UbiSite),":[41],"which":[42],"is":[43],"freely":[44],"available":[45],"at":[46],"http://csb.cse.yzu.edu.tw/UbiSite/":[47],".":[48],"Two":[49],"cases":[50],"given":[51],"UbiSite":[54],"demonstration":[57],"effective":[59],"identification":[60],"sites":[63],"with":[64],"reference":[65],"substrate":[67],"motifs.":[68]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":10},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":8},{"year":2017,"cited_by_count":7},{"year":2016,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
