{"id":"https://openalex.org/W2128852521","doi":"https://doi.org/10.1186/s12918-015-0212-9","title":"SBMLsqueezer 2: context-sensitive creation of kinetic equations in biochemical networks","display_name":"SBMLsqueezer 2: context-sensitive creation of kinetic equations in biochemical networks","publication_year":2015,"publication_date":"2015-10-09","ids":{"openalex":"https://openalex.org/W2128852521","doi":"https://doi.org/10.1186/s12918-015-0212-9","mag":"2128852521","pmid":"https://pubmed.ncbi.nlm.nih.gov/26452770"},"language":"en","primary_location":{"id":"doi:10.1186/s12918-015-0212-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12918-015-0212-9","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/s12918-015-0212-9","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/s12918-015-0212-9","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5065854572","display_name":"Andreas Dr\u00e4ger","orcid":"https://orcid.org/0000-0002-1240-5553"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]},{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]}],"countries":["DE","US"],"is_corresponding":true,"raw_author_name":"Andreas Dr\u00e4ger","raw_affiliation_strings":["Center for Bioinformatics Tuebingen (ZBIT), University of Tuebingen, Sand 1, T\u00fcbingen, 72076, Germany. andraeger@eng.ucsd.edu","Systems Biology Research Group, University of California, San Diego, 9500 Gilman Drive, La Jolla, 92093-0412, CA, USA. andraeger@eng.ucsd.edu"],"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics Tuebingen (ZBIT), University of Tuebingen, Sand 1, T\u00fcbingen, 72076, Germany. andraeger@eng.ucsd.edu","institution_ids":["https://openalex.org/I8087733"]},{"raw_affiliation_string":"Systems Biology Research Group, University of California, San Diego, 9500 Gilman Drive, La Jolla, 92093-0412, CA, USA. andraeger@eng.ucsd.edu","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070567302","display_name":"Daniel C. Zielinski","orcid":"https://orcid.org/0000-0001-6452-483X"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Daniel C Zielinski","raw_affiliation_strings":["Systems Biology Research Group, University of California, San Diego, 9500 Gilman Drive, La Jolla, 92093-0412, CA, USA. dczielin@eng.ucsd.edu"],"affiliations":[{"raw_affiliation_string":"Systems Biology Research Group, University of California, San Diego, 9500 Gilman Drive, La Jolla, 92093-0412, CA, USA. dczielin@eng.ucsd.edu","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111558148","display_name":"Roland Keller","orcid":null},"institutions":[{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Roland Keller","raw_affiliation_strings":["Center for Bioinformatics Tuebingen (ZBIT), University of Tuebingen, Sand 1, T\u00fcbingen, 72076, Germany. roland.keller@gmx.de"],"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics Tuebingen (ZBIT), University of Tuebingen, Sand 1, T\u00fcbingen, 72076, Germany. roland.keller@gmx.de","institution_ids":["https://openalex.org/I8087733"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082058750","display_name":"Matthias Rall","orcid":null},"institutions":[{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Matthias Rall","raw_affiliation_strings":["Center for Bioinformatics Tuebingen (ZBIT), University of Tuebingen, Sand 1, T\u00fcbingen, 72076, Germany. matthias.rall@student.uni-tuebingen.de"],"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics Tuebingen (ZBIT), University of Tuebingen, Sand 1, T\u00fcbingen, 72076, Germany. matthias.rall@student.uni-tuebingen.de","institution_ids":["https://openalex.org/I8087733"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108094949","display_name":"Johannes Eichner","orcid":null},"institutions":[{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Johannes Eichner","raw_affiliation_strings":["Center for Bioinformatics Tuebingen (ZBIT), University of Tuebingen, Sand 1, T\u00fcbingen, 72076, Germany. johannes.eichner@gmail.de"],"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics Tuebingen (ZBIT), University of Tuebingen, Sand 1, T\u00fcbingen, 72076, Germany. johannes.eichner@gmail.de","institution_ids":["https://openalex.org/I8087733"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051097609","display_name":"Bernhard \u00d8. Palsson","orcid":"https://orcid.org/0000-0003-2357-6785"},"institutions":[{"id":"https://openalex.org/I2801134892","display_name":"Novo Nordisk Foundation","ror":"https://ror.org/04txyc737","country_code":"DK","type":"facility","lineage":["https://openalex.org/I2801134892"]},{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["DK","US"],"is_corresponding":false,"raw_author_name":"Bernhard O Palsson","raw_affiliation_strings":["Novo Nordisk Foundation Center for Biosustainability, Kogle All\u00e9 6, H\u00f8rsholm, 2970, Denmark. palsson@ucsd.edu","Systems Biology Research Group, University of California, San Diego, 9500 Gilman Drive, La Jolla, 92093-0412, CA, USA. palsson@ucsd.edu"],"affiliations":[{"raw_affiliation_string":"Novo Nordisk Foundation Center for Biosustainability, Kogle All\u00e9 6, H\u00f8rsholm, 2970, Denmark. palsson@ucsd.edu","institution_ids":["https://openalex.org/I2801134892"]},{"raw_affiliation_string":"Systems Biology Research Group, University of California, San Diego, 9500 Gilman Drive, La Jolla, 92093-0412, CA, USA. palsson@ucsd.edu","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5004958444","display_name":"Andreas Zell","orcid":"https://orcid.org/0000-0003-3299-2211"},"institutions":[{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Andreas Zell","raw_affiliation_strings":["Center for Bioinformatics Tuebingen (ZBIT), University of Tuebingen, Sand 1, T\u00fcbingen, 72076, Germany. andreas.zell@uni-tuebingen.de"],"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics Tuebingen (ZBIT), University of Tuebingen, Sand 1, T\u00fcbingen, 72076, Germany. andreas.zell@uni-tuebingen.de","institution_ids":["https://openalex.org/I8087733"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5065854572"],"corresponding_institution_ids":["https://openalex.org/I36258959","https://openalex.org/I8087733"],"apc_list":null,"apc_paid":{"value":1661,"currency":"EUR","value_usd":1791},"fwci":1.5091,"has_fulltext":true,"cited_by_count":32,"citation_normalized_percentile":{"value":0.8240622,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"9","issue":"1","first_page":"68","last_page":"68"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7226092219352722},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.6468459367752075},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.6336064338684082},{"id":"https://openalex.org/keywords/parameterized-complexity","display_name":"Parameterized complexity","score":0.4748437702655792},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4717976450920105},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.4609452188014984},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.4533800184726715},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.4517974555492401},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.43771272897720337},{"id":"https://openalex.org/keywords/throughput","display_name":"Throughput","score":0.42051222920417786},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3684334456920624},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.32402271032333374},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.28252550959587097},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.26864397525787354},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.15026256442070007},{"id":"https://openalex.org/keywords/systems-engineering","display_name":"Systems engineering","score":0.11538931727409363}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7226092219352722},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.6468459367752075},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6336064338684082},{"id":"https://openalex.org/C165464430","wikidata":"https://www.wikidata.org/wiki/Q1570441","display_name":"Parameterized complexity","level":2,"score":0.4748437702655792},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4717976450920105},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.4609452188014984},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.4533800184726715},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.4517974555492401},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.43771272897720337},{"id":"https://openalex.org/C157764524","wikidata":"https://www.wikidata.org/wiki/Q1383412","display_name":"Throughput","level":3,"score":0.42051222920417786},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3684334456920624},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.32402271032333374},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.28252550959587097},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.26864397525787354},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.15026256442070007},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.11538931727409363},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C555944384","wikidata":"https://www.wikidata.org/wiki/Q249","display_name":"Wireless","level":2,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007700","descriptor_name":"Kinetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007700","descriptor_name":"Kinetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007700","descriptor_name":"Kinetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1186/s12918-015-0212-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12918-015-0212-9","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/s12918-015-0212-9","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},{"id":"pmid:26452770","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26452770","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC systems biology","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:4600286","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4600286","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Syst Biol","raw_type":"Text"},{"id":"pmh:ark:/13030/qt075890d9","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:escholarship.org/ark:/13030/qt075890d9","is_oa":false,"landing_page_url":"https://escholarship.org/uc/item/075890d9","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC systems biology, vol 9, iss 1","raw_type":"article"},{"id":"pmh:oai:pure.atira.dk:publications/63f90d49-134a-4286-8ef5-d8357d4e990a","is_oa":true,"landing_page_url":"https://orbit.dtu.dk/en/publications/63f90d49-134a-4286-8ef5-d8357d4e990a","pdf_url":null,"source":{"id":"https://openalex.org/S4306400705","display_name":"Technical University of Denmark, DTU Orbit (Technical University of Denmark, DTU)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I96673099","host_organization_name":"Technical University of Denmark","host_organization_lineage":["https://openalex.org/I96673099"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Draeger , A , Zielinski , D C , Keller , R , Rall , M , Eichner , J , Palsson , B O &amp; Zell , A 2015 , ' SBMLsqueezer 2: context-sensitive creation of kinetic equations in biochemical networks ' , B M C Systems Biology , vol. 9 , no. 68 . https://doi.org/10.1186/s12918-015-0212-9","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s12918-015-0212-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12918-015-0212-9","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/s12918-015-0212-9","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Peace, Justice and strong institutions","id":"https://metadata.un.org/sdg/16","score":0.5699999928474426}],"awards":[{"id":"https://openalex.org/G1040479455","display_name":null,"funder_award_id":"Virtual Liver Network","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G1811438633","display_name":null,"funder_award_id":"GM07092","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3005190885","display_name":null,"funder_award_id":"332020","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G3771654662","display_name":null,"funder_award_id":"GM070923","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6052429835","display_name":null,"funder_award_id":"(DFG)","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G6782187388","display_name":null,"funder_award_id":"0315756","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G6955755495","display_name":null,"funder_award_id":"Germany","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G8330397625","display_name":null,"funder_award_id":"Funding","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G8526424774","display_name":null,"funder_award_id":"Fellowship","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2128852521.pdf","grobid_xml":"https://content.openalex.org/works/W2128852521.grobid-xml"},"referenced_works_count":78,"referenced_works":["https://openalex.org/W32501030","https://openalex.org/W71184789","https://openalex.org/W95291027","https://openalex.org/W169087399","https://openalex.org/W1484198052","https://openalex.org/W1499095623","https://openalex.org/W1502529406","https://openalex.org/W1520746228","https://openalex.org/W1525055187","https://openalex.org/W1560696154","https://openalex.org/W1574663501","https://openalex.org/W1576919957","https://openalex.org/W1577685668","https://openalex.org/W1592132377","https://openalex.org/W1592730552","https://openalex.org/W1948323557","https://openalex.org/W1963522244","https://openalex.org/W1966506530","https://openalex.org/W1976811972","https://openalex.org/W1986110625","https://openalex.org/W1989263028","https://openalex.org/W2001758733","https://openalex.org/W2003116385","https://openalex.org/W2008633581","https://openalex.org/W2020561965","https://openalex.org/W2032348348","https://openalex.org/W2034463423","https://openalex.org/W2038264484","https://openalex.org/W2045266982","https://openalex.org/W2045802588","https://openalex.org/W2066266340","https://openalex.org/W2069157810","https://openalex.org/W2075283200","https://openalex.org/W2081781433","https://openalex.org/W2085993965","https://openalex.org/W2090120515","https://openalex.org/W2090733781","https://openalex.org/W2092091227","https://openalex.org/W2095304455","https://openalex.org/W2097210022","https://openalex.org/W2100525485","https://openalex.org/W2102653059","https://openalex.org/W2109975391","https://openalex.org/W2114034054","https://openalex.org/W2119579444","https://openalex.org/W2122860350","https://openalex.org/W2124419982","https://openalex.org/W2124737787","https://openalex.org/W2127219350","https://openalex.org/W2128763542","https://openalex.org/W2129325583","https://openalex.org/W2134221731","https://openalex.org/W2136482257","https://openalex.org/W2142634942","https://openalex.org/W2145435867","https://openalex.org/W2146737319","https://openalex.org/W2150908245","https://openalex.org/W2151313241","https://openalex.org/W2153355914","https://openalex.org/W2153921000","https://openalex.org/W2156028646","https://openalex.org/W2159482845","https://openalex.org/W2159739447","https://openalex.org/W2161088429","https://openalex.org/W2162144833","https://openalex.org/W2171745314","https://openalex.org/W2187198735","https://openalex.org/W2280490253","https://openalex.org/W2319101143","https://openalex.org/W2395301294","https://openalex.org/W2410922716","https://openalex.org/W2465447782","https://openalex.org/W2479294836","https://openalex.org/W2586256972","https://openalex.org/W2916475656","https://openalex.org/W2990509728","https://openalex.org/W4213127818","https://openalex.org/W4294216483"],"related_works":["https://openalex.org/W2051058708","https://openalex.org/W1494268238","https://openalex.org/W154868527","https://openalex.org/W1983207144","https://openalex.org/W2490706771","https://openalex.org/W2480116122","https://openalex.org/W4255576661","https://openalex.org/W1516574938","https://openalex.org/W2053685668","https://openalex.org/W2914625303"],"abstract_inverted_index":{"The":[0],"described":[1],"approach":[2],"fills":[3],"a":[4,39,48],"heretofore":[5],"absent":[6],"niche":[7],"in":[8],"workflows":[9],"for":[10],"large-scale":[11],"biochemical":[12],"kinetic":[13],"model":[14],"construction.":[15],"In":[16],"several":[17],"applications":[18],"the":[19],"algorithm":[20],"has":[21],"already":[22],"been":[23],"demonstrated":[24],"to":[25],"be":[26,36],"useful":[27],"and":[28,34,54],"scalable.":[29],"SBMLsqueezer":[30],"is":[31],"platform":[32],"independent":[33],"can":[35],"used":[37],"as":[38,42],"stand-alone":[40],"package,":[41],"an":[43],"integrated":[44],"plugin,":[45],"or":[46],"through":[47],"web":[49],"interface,":[50],"enabling":[51],"flexible":[52],"solutions":[53],"use-case":[55],"scenarios.":[56]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":6},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
