{"id":"https://openalex.org/W1572313459","doi":"https://doi.org/10.1186/s12918-015-0174-y","title":"SEEK: a systems biology data and model management platform","display_name":"SEEK: a systems biology data and model management platform","publication_year":2015,"publication_date":"2015-07-09","ids":{"openalex":"https://openalex.org/W1572313459","doi":"https://doi.org/10.1186/s12918-015-0174-y","mag":"1572313459","pmid":"https://pubmed.ncbi.nlm.nih.gov/26160520"},"language":"en","primary_location":{"id":"doi:10.1186/s12918-015-0174-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12918-015-0174-y","pdf_url":"https://bmcsystbiol.biomedcentral.com/track/pdf/10.1186/s12918-015-0174-y","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://bmcsystbiol.biomedcentral.com/track/pdf/10.1186/s12918-015-0174-y","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5087859284","display_name":"Katherine Wolstencroft","orcid":"https://orcid.org/0000-0002-1279-5133"},"institutions":[{"id":"https://openalex.org/I121797337","display_name":"Leiden University","ror":"https://ror.org/027bh9e22","country_code":"NL","type":"education","lineage":["https://openalex.org/I121797337"]}],"countries":["NL"],"is_corresponding":true,"raw_author_name":"Katherine Wolstencroft","raw_affiliation_strings":["Leiden Institute of Advanced Computer Science Leiden Institute of Advanced Computer Science, Leiden University, 111 Snellius, Niels Bohrweg 1, Leiden, CA, 2333, Netherlands. k.j.wolstencroft@liacs.leidenuniv.nl","Leiden Institute of Advanced Computer Science Leiden Institute of Advanced Computer Science, Leiden University, Leiden, Netherlands"],"affiliations":[{"raw_affiliation_string":"Leiden Institute of Advanced Computer Science Leiden Institute of Advanced Computer Science, Leiden University, 111 Snellius, Niels Bohrweg 1, Leiden, CA, 2333, Netherlands. k.j.wolstencroft@liacs.leidenuniv.nl","institution_ids":[]},{"raw_affiliation_string":"Leiden Institute of Advanced Computer Science Leiden Institute of Advanced Computer Science, Leiden University, Leiden, Netherlands","institution_ids":["https://openalex.org/I121797337"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022818385","display_name":"Stuart Owen","orcid":"https://orcid.org/0000-0003-2130-0865"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Stuart Owen","raw_affiliation_strings":["School of Computer Science, University of Manchester, Kilburn Building, Oxford Road, Manchester, M13 9PL, UK"],"affiliations":[{"raw_affiliation_string":"School of Computer Science, University of Manchester, Kilburn Building, Oxford Road, Manchester, M13 9PL, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042243911","display_name":"Olga Krebs","orcid":"https://orcid.org/0000-0003-3540-0402"},"institutions":[{"id":"https://openalex.org/I71030271","display_name":"Heidelberg Institute for Theoretical Studies","ror":"https://ror.org/01f7bcy98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I71030271"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Olga Krebs","raw_affiliation_strings":["Heidelberg Institute for Theoretical Studies, Schloss-Wolfsbrunnenweg, Heidelberg, 35 69118, Germany","Heidelberg Institute for Theoretical Studies, Schloss-Wolfsbrunnenweg, Heidelberg 35 69118, Germany"],"affiliations":[{"raw_affiliation_string":"Heidelberg Institute for Theoretical Studies, Schloss-Wolfsbrunnenweg, Heidelberg, 35 69118, Germany","institution_ids":["https://openalex.org/I71030271"]},{"raw_affiliation_string":"Heidelberg Institute for Theoretical Studies, Schloss-Wolfsbrunnenweg, Heidelberg 35 69118, Germany","institution_ids":["https://openalex.org/I71030271"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044621619","display_name":"Quyen Le Hoang Thuy To Nguyen","orcid":"https://orcid.org/0000-0001-9254-2605"},"institutions":[{"id":"https://openalex.org/I71030271","display_name":"Heidelberg Institute for Theoretical Studies","ror":"https://ror.org/01f7bcy98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I71030271"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Quyen Nguyen","raw_affiliation_strings":["Heidelberg Institute for Theoretical Studies, Schloss-Wolfsbrunnenweg, Heidelberg, 35 69118, Germany","Heidelberg Institute for Theoretical Studies; Heidelberg Germany"],"affiliations":[{"raw_affiliation_string":"Heidelberg Institute for Theoretical Studies, Schloss-Wolfsbrunnenweg, Heidelberg, 35 69118, Germany","institution_ids":["https://openalex.org/I71030271"]},{"raw_affiliation_string":"Heidelberg Institute for Theoretical Studies; Heidelberg Germany","institution_ids":["https://openalex.org/I71030271"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072794019","display_name":"Natalie Stanford","orcid":"https://orcid.org/0000-0003-4958-0184"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Natalie J Stanford","raw_affiliation_strings":["School of Computer Science, University of Manchester, Kilburn Building, Oxford Road, Manchester, M13 9PL, UK. natalie.stanford@manchester.ac.uk","School of Computer Science, University of Manchester, Kilburn Building, Manchester, UK"],"affiliations":[{"raw_affiliation_string":"School of Computer Science, University of Manchester, Kilburn Building, Oxford Road, Manchester, M13 9PL, UK. natalie.stanford@manchester.ac.uk","institution_ids":[]},{"raw_affiliation_string":"School of Computer Science, University of Manchester, Kilburn Building, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028677591","display_name":"Martin Golebiewski","orcid":"https://orcid.org/0000-0002-8683-7084"},"institutions":[{"id":"https://openalex.org/I71030271","display_name":"Heidelberg Institute for Theoretical Studies","ror":"https://ror.org/01f7bcy98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I71030271"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Martin Golebiewski","raw_affiliation_strings":["Heidelberg Institute for Theoretical Studies, Schloss-Wolfsbrunnenweg, Heidelberg, 35 69118, Germany","Heidelberg Institute for Theoretical Studies; Heidelberg Germany"],"affiliations":[{"raw_affiliation_string":"Heidelberg Institute for Theoretical Studies, Schloss-Wolfsbrunnenweg, Heidelberg, 35 69118, Germany","institution_ids":["https://openalex.org/I71030271"]},{"raw_affiliation_string":"Heidelberg Institute for Theoretical Studies; Heidelberg Germany","institution_ids":["https://openalex.org/I71030271"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004349037","display_name":"Andreas Weidemann","orcid":null},"institutions":[{"id":"https://openalex.org/I71030271","display_name":"Heidelberg Institute for Theoretical Studies","ror":"https://ror.org/01f7bcy98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I71030271"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Andreas Weidemann","raw_affiliation_strings":["Heidelberg Institute for Theoretical Studies, Schloss-Wolfsbrunnenweg, Heidelberg, 35 69118, Germany","Heidelberg Institute for Theoretical Studies; Heidelberg Germany"],"affiliations":[{"raw_affiliation_string":"Heidelberg Institute for Theoretical Studies, Schloss-Wolfsbrunnenweg, Heidelberg, 35 69118, Germany","institution_ids":["https://openalex.org/I71030271"]},{"raw_affiliation_string":"Heidelberg Institute for Theoretical Studies; Heidelberg Germany","institution_ids":["https://openalex.org/I71030271"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006485784","display_name":"Meik Bittkowski","orcid":null},"institutions":[{"id":"https://openalex.org/I71030271","display_name":"Heidelberg Institute for Theoretical Studies","ror":"https://ror.org/01f7bcy98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I71030271"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Meik Bittkowski","raw_affiliation_strings":["Heidelberg Institute for Theoretical Studies, Schloss-Wolfsbrunnenweg, Heidelberg, 35 69118, Germany","Heidelberg Institute for Theoretical Studies; Heidelberg Germany"],"affiliations":[{"raw_affiliation_string":"Heidelberg Institute for Theoretical Studies, Schloss-Wolfsbrunnenweg, Heidelberg, 35 69118, Germany","institution_ids":["https://openalex.org/I71030271"]},{"raw_affiliation_string":"Heidelberg Institute for Theoretical Studies; Heidelberg Germany","institution_ids":["https://openalex.org/I71030271"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101063982","display_name":"Lihua An","orcid":null},"institutions":[{"id":"https://openalex.org/I71030271","display_name":"Heidelberg Institute for Theoretical Studies","ror":"https://ror.org/01f7bcy98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I71030271"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Lihua An","raw_affiliation_strings":["Heidelberg Institute for Theoretical Studies, Schloss-Wolfsbrunnenweg, Heidelberg, 35 69118, Germany","Heidelberg Institute for Theoretical Studies; Heidelberg Germany"],"affiliations":[{"raw_affiliation_string":"Heidelberg Institute for Theoretical Studies, Schloss-Wolfsbrunnenweg, Heidelberg, 35 69118, Germany","institution_ids":["https://openalex.org/I71030271"]},{"raw_affiliation_string":"Heidelberg Institute for Theoretical Studies; Heidelberg Germany","institution_ids":["https://openalex.org/I71030271"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075631600","display_name":"David Shockley","orcid":null},"institutions":[{"id":"https://openalex.org/I71030271","display_name":"Heidelberg Institute for Theoretical Studies","ror":"https://ror.org/01f7bcy98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I71030271"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"David Shockley","raw_affiliation_strings":["Heidelberg Institute for Theoretical Studies, Schloss-Wolfsbrunnenweg, Heidelberg, 35 69118, Germany","Heidelberg Institute for Theoretical Studies; Heidelberg Germany"],"affiliations":[{"raw_affiliation_string":"Heidelberg Institute for Theoretical Studies, Schloss-Wolfsbrunnenweg, Heidelberg, 35 69118, Germany","institution_ids":["https://openalex.org/I71030271"]},{"raw_affiliation_string":"Heidelberg Institute for Theoretical Studies; Heidelberg Germany","institution_ids":["https://openalex.org/I71030271"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020530809","display_name":"Jacky L. Snoep","orcid":"https://orcid.org/0000-0002-0405-8854"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]},{"id":"https://openalex.org/I26092322","display_name":"Stellenbosch University","ror":"https://ror.org/05bk57929","country_code":"ZA","type":"education","lineage":["https://openalex.org/I26092322"]}],"countries":["GB","ZA"],"is_corresponding":false,"raw_author_name":"Jacky L. Snoep","raw_affiliation_strings":["Department of Biochemistry, University of Stellenbosch, Private Bag X1, 7602, Matieland, South Africa","School of Chemical Engineering & Analytical Science, The University of Manchester, Oxford Road, Manchester, M13 9PL, United Kingdom","Department of Biochemistry, University of Stellenbosch, Matieland, South Africa","School of Chemical Engineering & Analytical Science, The University of Manchester, Manchester, United Kingdom"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry, University of Stellenbosch, Private Bag X1, 7602, Matieland, South Africa","institution_ids":["https://openalex.org/I26092322"]},{"raw_affiliation_string":"School of Chemical Engineering & Analytical Science, The University of Manchester, Oxford Road, Manchester, M13 9PL, United Kingdom","institution_ids":["https://openalex.org/I28407311"]},{"raw_affiliation_string":"Department of Biochemistry, University of Stellenbosch, Matieland, South Africa","institution_ids":["https://openalex.org/I26092322"]},{"raw_affiliation_string":"School of Chemical Engineering & Analytical Science, The University of Manchester, Manchester, United Kingdom","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062564374","display_name":"Wolfgang Mueller","orcid":"https://orcid.org/0000-0001-6474-3733"},"institutions":[{"id":"https://openalex.org/I71030271","display_name":"Heidelberg Institute for Theoretical Studies","ror":"https://ror.org/01f7bcy98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I71030271"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Wolfgang Mueller","raw_affiliation_strings":["Heidelberg Institute for Theoretical Studies, Schloss-Wolfsbrunnenweg, Heidelberg, 35 69118, Germany","Heidelberg Institute for Theoretical Studies; Heidelberg Germany"],"affiliations":[{"raw_affiliation_string":"Heidelberg Institute for Theoretical Studies, Schloss-Wolfsbrunnenweg, Heidelberg, 35 69118, Germany","institution_ids":["https://openalex.org/I71030271"]},{"raw_affiliation_string":"Heidelberg Institute for Theoretical Studies; Heidelberg Germany","institution_ids":["https://openalex.org/I71030271"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5027899893","display_name":"Carole Goble","orcid":"https://orcid.org/0000-0003-1219-2137"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Carole Goble","raw_affiliation_strings":["School of Computer Science, University of Manchester, Kilburn Building, Oxford Road, Manchester, M13 9PL, UK","School of Computer Science, University of Manchester, Kilburn Building, Manchester, UK"],"affiliations":[{"raw_affiliation_string":"School of Computer Science, University of Manchester, Kilburn Building, Oxford Road, Manchester, M13 9PL, UK","institution_ids":["https://openalex.org/I28407311"]},{"raw_affiliation_string":"School of Computer Science, University of Manchester, Kilburn Building, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":13,"corresponding_author_ids":["https://openalex.org/A5087859284"],"corresponding_institution_ids":["https://openalex.org/I121797337"],"apc_list":null,"apc_paid":{"value":2424,"currency":"EUR","value_usd":2614},"fwci":4.829,"has_fulltext":true,"cited_by_count":114,"citation_normalized_percentile":{"value":0.95661038,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"9","issue":"1","first_page":"33","last_page":"33"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.992900013923645,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9914000034332275,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.736452043056488},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.6604423522949219},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5998237133026123},{"id":"https://openalex.org/keywords/data-sharing","display_name":"Data sharing","score":0.5975700616836548},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.5266278386116028},{"id":"https://openalex.org/keywords/data-management","display_name":"Data management","score":0.5122898817062378},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5072657465934753},{"id":"https://openalex.org/keywords/rdf","display_name":"RDF","score":0.49851393699645996},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.4786992371082306},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3949342966079712},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.3642846941947937},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.25027990341186523},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.13328737020492554},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.11375004053115845}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.736452043056488},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.6604423522949219},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5998237133026123},{"id":"https://openalex.org/C2779965156","wikidata":"https://www.wikidata.org/wiki/Q5227350","display_name":"Data sharing","level":3,"score":0.5975700616836548},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.5266278386116028},{"id":"https://openalex.org/C1668388","wikidata":"https://www.wikidata.org/wiki/Q1149776","display_name":"Data management","level":2,"score":0.5122898817062378},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5072657465934753},{"id":"https://openalex.org/C147497476","wikidata":"https://www.wikidata.org/wiki/Q54872","display_name":"RDF","level":3,"score":0.49851393699645996},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.4786992371082306},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3949342966079712},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.3642846941947937},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.25027990341186523},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.13328737020492554},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.11375004053115845},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C204787440","wikidata":"https://www.wikidata.org/wiki/Q188504","display_name":"Alternative medicine","level":2,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D002244","descriptor_name":"Carbon","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002244","descriptor_name":"Carbon","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002244","descriptor_name":"Carbon","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016944","descriptor_name":"Sulfolobus","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016944","descriptor_name":"Sulfolobus","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016944","descriptor_name":"Sulfolobus","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":9,"locations":[{"id":"doi:10.1186/s12918-015-0174-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12918-015-0174-y","pdf_url":"https://bmcsystbiol.biomedcentral.com/track/pdf/10.1186/s12918-015-0174-y","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},{"id":"pmid:26160520","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26160520","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC systems biology","raw_type":null},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/1afdfe8b-0983-4519-ae8c-df39f530914f","is_oa":false,"landing_page_url":"https://research.manchester.ac.uk/en/publications/1afdfe8b-0983-4519-ae8c-df39f530914f","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Wolstencroft, K, Owen, S, Krebs, O, Nguyen, Q, Stanford, N J, Golebiewski, M, Weidemann, A, Bittkowski, M, An, L, Shockley, D, Snoep, J L, Mueller, W & Goble, C 2015, 'SEEK: a systems biology data and model management platform.', BMC Systems Biology, vol. 9, no. 33. https://doi.org/10.1186/s12918-015-0174-y","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:research.vu.nl:openaire/c22d21a9-477b-4f4c-94a9-37a922a624f9","is_oa":true,"landing_page_url":"https://research.vu.nl/en/publications/c22d21a9-477b-4f4c-94a9-37a922a624f9","pdf_url":null,"source":{"id":"https://openalex.org/S4306401107","display_name":"VU Research Portal","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I865915315","host_organization_name":"Vrije Universiteit Amsterdam","host_organization_lineage":["https://openalex.org/I865915315"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Wolstencroft, K J, Owen, S, Krebs, O, Nguyen, Q, Stanford, N J, Golebiewski, M, Weidemann, A, Bittkowski, M, An, L, Shockley, D, Snoep, J L, Mueller, W & Goble, C 2015, 'SEEK: a systems biology data and model management platform.', BMC Systems Biology, vol. 9, no. 33. https://doi.org/10.1186/s12918-015-0174-y","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:europepmc.org:3679405","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4702362","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:openaccess.leidenuniv.nl:1887/51283","is_oa":false,"landing_page_url":"http://hdl.handle.net/1887/51283","pdf_url":null,"source":{"id":"https://openalex.org/S4306400850","display_name":"Leiden Repository (Leiden University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I121797337","host_organization_name":"Leiden University","host_organization_lineage":["https://openalex.org/I121797337"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"9","raw_type":"Article / Letter to editor"},{"id":"pmh:oai:research.vu.nl:publications/c22d21a9-477b-4f4c-94a9-37a922a624f9","is_oa":true,"landing_page_url":"https://hdl.handle.net/1871.1/c22d21a9-477b-4f4c-94a9-37a922a624f9","pdf_url":null,"source":{"id":"https://openalex.org/S4306401107","display_name":"VU Research Portal","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I865915315","host_organization_name":"Vrije Universiteit Amsterdam","host_organization_lineage":["https://openalex.org/I865915315"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Wolstencroft, K J, Owen, S, Krebs, O, Nguyen, Q, Stanford, N J, Golebiewski, M, Weidemann, A, Bittkowski, M, An, L, Shockley, D, Snoep, J L, Mueller, W & Goble, C 2015, 'SEEK: a systems biology data and model management platform.', BMC Systems Biology, vol. 9, no. 33. https://doi.org/10.1186/s12918-015-0174-y","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:scholar.sun.ac.za:10019.1/99810","is_oa":false,"landing_page_url":"http://hdl.handle.net/10019.1/99810","pdf_url":null,"source":{"id":"https://openalex.org/S4306400300","display_name":"SUNScholar (Stellenbosch University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I26092322","host_organization_name":"Stellenbosch University","host_organization_lineage":["https://openalex.org/I26092322"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:scholarlypublications.universiteitleiden.nl:item_2866093","is_oa":false,"landing_page_url":"https://hdl.handle.net/1887/51283","pdf_url":null,"source":{"id":"https://openalex.org/S4306400850","display_name":"Leiden Repository (Leiden University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I121797337","host_organization_name":"Leiden University","host_organization_lineage":["https://openalex.org/I121797337"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Systems Biology","raw_type":"Article / Letter to editor"}],"best_oa_location":{"id":"doi:10.1186/s12918-015-0174-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12918-015-0174-y","pdf_url":"https://bmcsystbiol.biomedcentral.com/track/pdf/10.1186/s12918-015-0174-y","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.41999998688697815}],"awards":[{"id":"https://openalex.org/G2325599728","display_name":null,"funder_award_id":"0315749","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G387813240","display_name":null,"funder_award_id":"BB/M0","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G5318661203","display_name":null,"funder_award_id":"BB/M013189/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G5446152200","display_name":"DMMCore: Data and Model Management Core for ERASysAPP &amp; Europe","funder_award_id":"BB/M013189/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G5918933644","display_name":"SysMO-DB2","funder_award_id":"BB/I004637/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G656779159","display_name":null,"funder_award_id":"ID0EG3BG68","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G7225624288","display_name":null,"funder_award_id":"This work was","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G744749362","display_name":null,"funder_award_id":"BB/I004637/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1572313459.pdf","grobid_xml":"https://content.openalex.org/works/W1572313459.grobid-xml"},"referenced_works_count":33,"referenced_works":["https://openalex.org/W78239168","https://openalex.org/W1521228064","https://openalex.org/W1544923801","https://openalex.org/W1812401750","https://openalex.org/W1977032720","https://openalex.org/W1989263028","https://openalex.org/W2012555772","https://openalex.org/W2020152108","https://openalex.org/W2020561965","https://openalex.org/W2033377040","https://openalex.org/W2064867081","https://openalex.org/W2069157810","https://openalex.org/W2069928158","https://openalex.org/W2098769288","https://openalex.org/W2100471807","https://openalex.org/W2107249189","https://openalex.org/W2107572678","https://openalex.org/W2113310608","https://openalex.org/W2118258530","https://openalex.org/W2122344857","https://openalex.org/W2123152121","https://openalex.org/W2123783513","https://openalex.org/W2125094352","https://openalex.org/W2126777664","https://openalex.org/W2130430745","https://openalex.org/W2141297584","https://openalex.org/W2146722981","https://openalex.org/W2147814423","https://openalex.org/W2150908245","https://openalex.org/W2160751597","https://openalex.org/W2165428180","https://openalex.org/W2417588076","https://openalex.org/W4230949961"],"related_works":["https://openalex.org/W3136548765","https://openalex.org/W1504819070","https://openalex.org/W2394072345","https://openalex.org/W2988102712","https://openalex.org/W4237172707","https://openalex.org/W1501592941","https://openalex.org/W2805259584","https://openalex.org/W2773594083","https://openalex.org/W2030404924","https://openalex.org/W3018845829"],"abstract_inverted_index":{"The":[0],"SEEK":[1,44,52],"platform":[2],"has":[3,20],"been":[4],"adopted":[5],"by":[6],"many":[7],"systems":[8,69],"biology":[9,58,70],"consortia":[10],"across":[11],"Europe.":[12],"It":[13],"is":[14],"a":[15,21],"data":[16],"management":[17],"environment":[18],"that":[19],"low":[22],"barrier":[23],"of":[24,42,50],"uptake":[25],"and":[26,40,46,61,76],"provides":[27,34],"rich":[28],"resources":[29],"for":[30,59],"collaboration.":[31],"This":[32],"paper":[33],"an":[35],"update":[36],"on":[37],"the":[38,43,48,51,54,62],"functions":[39],"features":[41],"software,":[45],"describes":[47],"use":[49],"in":[53],"SysMO":[55],"consortium":[56],"(Systems":[57],"Micro-organisms),":[60],"VLN":[63],"(virtual":[64],"Liver":[65],"Network),":[66],"two":[67],"large":[68],"initiatives":[71],"with":[72],"different":[73,77],"research":[74],"aims":[75],"scientific":[78],"communities.":[79]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":9},{"year":2023,"cited_by_count":11},{"year":2022,"cited_by_count":13},{"year":2021,"cited_by_count":12},{"year":2020,"cited_by_count":14},{"year":2019,"cited_by_count":12},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":9},{"year":2016,"cited_by_count":13},{"year":2015,"cited_by_count":4}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
