{"id":"https://openalex.org/W2134062116","doi":"https://doi.org/10.1186/s12918-015-0166-y","title":"Reshaping the epigenetic landscape during early flower development: induction of attractor transitions by relative differences in gene decay rates","display_name":"Reshaping the epigenetic landscape during early flower development: induction of attractor transitions by relative differences in gene decay rates","publication_year":2015,"publication_date":"2015-05-12","ids":{"openalex":"https://openalex.org/W2134062116","doi":"https://doi.org/10.1186/s12918-015-0166-y","mag":"2134062116","pmid":"https://pubmed.ncbi.nlm.nih.gov/25967891"},"language":"en","primary_location":{"id":"doi:10.1186/s12918-015-0166-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12918-015-0166-y","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/s12918-015-0166-y","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/s12918-015-0166-y","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5068597405","display_name":"Jos\u00e9 D\u00e1vila-Velderrain","orcid":"https://orcid.org/0000-0003-0271-6267"},"institutions":[{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]},{"id":"https://openalex.org/I4210154133","display_name":"Instituto de Ecolog\u00eda","ror":"https://ror.org/03yvabt26","country_code":"MX","type":"facility","lineage":["https://openalex.org/I4210154133"]}],"countries":["MX"],"is_corresponding":true,"raw_author_name":"Jose Davila-Velderrain","raw_affiliation_strings":["Centro de Ciencias de la Complejidad (C3), Universidad Nacional Aut\u00f3noma de M\u00e9xico, Cd. Universitaria, M\u00e9xico, 04510, D.F., M\u00e9xico. jdjosedavila@gmail.com","Instituto de Ecolog\u00eda, Universidad Nacional Aut\u00f3noma de M\u00e9xico, Cd. Universitaria, M\u00e9xico, 04510, D.F., M\u00e9xico. jdjosedavila@gmail.com","Instituto de Ecolog\u00eda, Universidad Nacional Aut\u00f3noma de M\u00e9xico, Cd. Universitaria, M\u00e9xico, 04510, D.F., M\u00e9xico"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centro de Ciencias de la Complejidad (C3), Universidad Nacional Aut\u00f3noma de M\u00e9xico, Cd. Universitaria, M\u00e9xico, 04510, D.F., M\u00e9xico. jdjosedavila@gmail.com","institution_ids":[]},{"raw_affiliation_string":"Instituto de Ecolog\u00eda, Universidad Nacional Aut\u00f3noma de M\u00e9xico, Cd. Universitaria, M\u00e9xico, 04510, D.F., M\u00e9xico. jdjosedavila@gmail.com","institution_ids":[]},{"raw_affiliation_string":"Instituto de Ecolog\u00eda, Universidad Nacional Aut\u00f3noma de M\u00e9xico, Cd. Universitaria, M\u00e9xico, 04510, D.F., M\u00e9xico","institution_ids":["https://openalex.org/I8961855","https://openalex.org/I4210154133"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008755301","display_name":"Carlos Villarreal","orcid":"https://orcid.org/0000-0003-3569-2820"},"institutions":[{"id":"https://openalex.org/I167724894","display_name":"Universidad Aut\u00f3noma de la Ciudad de M\u00e9xico","ror":"https://ror.org/04q0r6m34","country_code":"MX","type":"education","lineage":["https://openalex.org/I167724894"]},{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Carlos Villarreal","raw_affiliation_strings":["Centro de Ciencias de la Complejidad (C3), Universidad Nacional Aut\u00f3noma de M\u00e9xico, Cd. Universitaria, M\u00e9xico, 04510, D.F., M\u00e9xico. carlos@fisica.unam.mx","Instituto de F\u00edsica, Universidad Nacional Aut\u00f3noma de M\u00e9xico, Cd. Universitaria, M\u00e9xico, 04510, D.F., M\u00e9xico. carlos@fisica.unam.mx","Centro de Ciencias de la Complejidad (C3), Universidad Nacional Aut\u00f3noma de M\u00e9xico, Cd. Universitaria, M\u00e9xico, 04510, D.F., M\u00e9xico"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centro de Ciencias de la Complejidad (C3), Universidad Nacional Aut\u00f3noma de M\u00e9xico, Cd. Universitaria, M\u00e9xico, 04510, D.F., M\u00e9xico. carlos@fisica.unam.mx","institution_ids":[]},{"raw_affiliation_string":"Instituto de F\u00edsica, Universidad Nacional Aut\u00f3noma de M\u00e9xico, Cd. Universitaria, M\u00e9xico, 04510, D.F., M\u00e9xico. carlos@fisica.unam.mx","institution_ids":[]},{"raw_affiliation_string":"Centro de Ciencias de la Complejidad (C3), Universidad Nacional Aut\u00f3noma de M\u00e9xico, Cd. Universitaria, M\u00e9xico, 04510, D.F., M\u00e9xico","institution_ids":["https://openalex.org/I167724894","https://openalex.org/I8961855"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5022055568","display_name":"Elena \u00c1lvarez\u2010Buylla","orcid":"https://orcid.org/0000-0002-7938-6473"},"institutions":[{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]},{"id":"https://openalex.org/I167724894","display_name":"Universidad Aut\u00f3noma de la Ciudad de M\u00e9xico","ror":"https://ror.org/04q0r6m34","country_code":"MX","type":"education","lineage":["https://openalex.org/I167724894"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Elena R Alvarez-Buylla","raw_affiliation_strings":["Centro de Ciencias de la Complejidad (C3), Universidad Nacional Aut\u00f3noma de M\u00e9xico, Cd. Universitaria, M\u00e9xico, 04510, D.F., M\u00e9xico. eabuylla@gmail.com","Instituto de Ecolog\u00eda, Universidad Nacional Aut\u00f3noma de M\u00e9xico, Cd. Universitaria, M\u00e9xico, 04510, D.F., M\u00e9xico. eabuylla@gmail.com","Centro de Ciencias de la Complejidad (C3), Universidad Nacional Aut\u00f3noma de M\u00e9xico, Cd. Universitaria, M\u00e9xico, 04510, D.F., M\u00e9xico"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centro de Ciencias de la Complejidad (C3), Universidad Nacional Aut\u00f3noma de M\u00e9xico, Cd. Universitaria, M\u00e9xico, 04510, D.F., M\u00e9xico. eabuylla@gmail.com","institution_ids":[]},{"raw_affiliation_string":"Instituto de Ecolog\u00eda, Universidad Nacional Aut\u00f3noma de M\u00e9xico, Cd. Universitaria, M\u00e9xico, 04510, D.F., M\u00e9xico. eabuylla@gmail.com","institution_ids":[]},{"raw_affiliation_string":"Centro de Ciencias de la Complejidad (C3), Universidad Nacional Aut\u00f3noma de M\u00e9xico, Cd. Universitaria, M\u00e9xico, 04510, D.F., M\u00e9xico","institution_ids":["https://openalex.org/I167724894","https://openalex.org/I8961855"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5068597405"],"corresponding_institution_ids":["https://openalex.org/I4210154133","https://openalex.org/I8961855"],"apc_list":null,"apc_paid":null,"fwci":7.7338,"has_fulltext":true,"cited_by_count":38,"citation_normalized_percentile":{"value":0.96647726,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"9","issue":"1","first_page":"20","last_page":"20"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.940500020980835,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.940500020980835,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.013500000350177288,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11237","display_name":"Plant Gene Expression Analysis","score":0.009700000286102295,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/attractor","display_name":"Attractor","score":0.849395751953125},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6058962941169739},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.5828722715377808},{"id":"https://openalex.org/keywords/meristem","display_name":"Meristem","score":0.5783414244651794},{"id":"https://openalex.org/keywords/dynamical-systems-theory","display_name":"Dynamical systems theory","score":0.5191992521286011},{"id":"https://openalex.org/keywords/epigenetics","display_name":"Epigenetics","score":0.5151537656784058},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.4975781738758087},{"id":"https://openalex.org/keywords/mechanism","display_name":"Mechanism (biology)","score":0.47079363465309143},{"id":"https://openalex.org/keywords/homeotic-gene","display_name":"Homeotic gene","score":0.4514431655406952},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.39210063219070435},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.36273592710494995},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.33463382720947266},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2574208974838257},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.2038707733154297},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.19606584310531616},{"id":"https://openalex.org/keywords/phenotype","display_name":"Phenotype","score":0.1953146755695343},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.17817267775535583}],"concepts":[{"id":"https://openalex.org/C164380108","wikidata":"https://www.wikidata.org/wiki/Q507187","display_name":"Attractor","level":2,"score":0.849395751953125},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6058962941169739},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.5828722715377808},{"id":"https://openalex.org/C126021549","wikidata":"https://www.wikidata.org/wiki/Q207604","display_name":"Meristem","level":3,"score":0.5783414244651794},{"id":"https://openalex.org/C79379906","wikidata":"https://www.wikidata.org/wiki/Q3174497","display_name":"Dynamical systems theory","level":2,"score":0.5191992521286011},{"id":"https://openalex.org/C41091548","wikidata":"https://www.wikidata.org/wiki/Q26939","display_name":"Epigenetics","level":3,"score":0.5151537656784058},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.4975781738758087},{"id":"https://openalex.org/C89611455","wikidata":"https://www.wikidata.org/wiki/Q6804646","display_name":"Mechanism (biology)","level":2,"score":0.47079363465309143},{"id":"https://openalex.org/C46751350","wikidata":"https://www.wikidata.org/wiki/Q1939530","display_name":"Homeotic gene","level":4,"score":0.4514431655406952},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.39210063219070435},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.36273592710494995},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.33463382720947266},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2574208974838257},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2038707733154297},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.19606584310531616},{"id":"https://openalex.org/C127716648","wikidata":"https://www.wikidata.org/wiki/Q104053","display_name":"Phenotype","level":3,"score":0.1953146755695343},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.17817267775535583},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017343","descriptor_name":"Genes, Plant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017343","descriptor_name":"Genes, Plant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017343","descriptor_name":"Genes, Plant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035264","descriptor_name":"Flowers","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D035264","descriptor_name":"Flowers","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D035264","descriptor_name":"Flowers","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D035264","descriptor_name":"Flowers","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035264","descriptor_name":"Flowers","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035264","descriptor_name":"Flowers","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035264","descriptor_name":"Flowers","qualifier_ui":"Q000254","qualifier_name":"growth & development","is_major_topic":false},{"descriptor_ui":"D035264","descriptor_name":"Flowers","qualifier_ui":"Q000254","qualifier_name":"growth & development","is_major_topic":false},{"descriptor_ui":"D035264","descriptor_name":"Flowers","qualifier_ui":"Q000254","qualifier_name":"growth & development","is_major_topic":false},{"descriptor_ui":"D044127","descriptor_name":"Epigenesis, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D044127","descriptor_name":"Epigenesis, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D044127","descriptor_name":"Epigenesis, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1186/s12918-015-0166-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12918-015-0166-y","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/s12918-015-0166-y","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},{"id":"pmid:25967891","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25967891","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC systems biology","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:4438470","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4438470","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Syst Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12918-015-0166-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12918-015-0166-y","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/s12918-015-0166-y","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land","score":0.6600000262260437}],"awards":[{"id":"https://openalex.org/G4598442145","display_name":null,"funder_award_id":"IN203113","funder_id":"https://openalex.org/F4320335100","funder_display_name":"Direcci\u00f3n General de Asuntos del Personal Acad\u00e9mico, Universidad Nacional Aut\u00f3noma de M\u00e9xico"}],"funders":[{"id":"https://openalex.org/F4320323401","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25"},{"id":"https://openalex.org/F4320323662","display_name":"ERAB: The European Foundation for Alcohol Research","ror":"https://ror.org/04g6qfd94"},{"id":"https://openalex.org/F4320335100","display_name":"Direcci\u00f3n General de Asuntos del Personal Acad\u00e9mico, Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2134062116.pdf","grobid_xml":"https://content.openalex.org/works/W2134062116.grobid-xml"},"referenced_works_count":81,"referenced_works":["https://openalex.org/W42350297","https://openalex.org/W225301010","https://openalex.org/W229097380","https://openalex.org/W650948262","https://openalex.org/W1238260143","https://openalex.org/W1482956063","https://openalex.org/W1487547526","https://openalex.org/W1498887287","https://openalex.org/W1517120174","https://openalex.org/W1592485629","https://openalex.org/W1623155147","https://openalex.org/W1659355396","https://openalex.org/W1886819223","https://openalex.org/W1970779075","https://openalex.org/W1971224531","https://openalex.org/W1972773888","https://openalex.org/W1977143267","https://openalex.org/W1978217382","https://openalex.org/W1978673033","https://openalex.org/W1990139847","https://openalex.org/W1995804509","https://openalex.org/W2000685050","https://openalex.org/W2000828318","https://openalex.org/W2005245900","https://openalex.org/W2018909562","https://openalex.org/W2029991507","https://openalex.org/W2031037571","https://openalex.org/W2032811716","https://openalex.org/W2035824523","https://openalex.org/W2036826180","https://openalex.org/W2044013267","https://openalex.org/W2044890688","https://openalex.org/W2046537766","https://openalex.org/W2048438929","https://openalex.org/W2055436939","https://openalex.org/W2056313562","https://openalex.org/W2057020332","https://openalex.org/W2059291619","https://openalex.org/W2063854986","https://openalex.org/W2072319015","https://openalex.org/W2074685809","https://openalex.org/W2083838505","https://openalex.org/W2084680864","https://openalex.org/W2085491974","https://openalex.org/W2093047307","https://openalex.org/W2102216585","https://openalex.org/W2103454055","https://openalex.org/W2103723044","https://openalex.org/W2105254505","https://openalex.org/W2108020239","https://openalex.org/W2109110326","https://openalex.org/W2114518254","https://openalex.org/W2115351194","https://openalex.org/W2115397424","https://openalex.org/W2123634285","https://openalex.org/W2125426082","https://openalex.org/W2126790232","https://openalex.org/W2132278571","https://openalex.org/W2132517266","https://openalex.org/W2136829296","https://openalex.org/W2141368462","https://openalex.org/W2141420868","https://openalex.org/W2141545875","https://openalex.org/W2147615881","https://openalex.org/W2149464763","https://openalex.org/W2157857537","https://openalex.org/W2168221215","https://openalex.org/W2313914485","https://openalex.org/W2314143613","https://openalex.org/W2416340783","https://openalex.org/W2477296412","https://openalex.org/W2487770199","https://openalex.org/W3021145540","https://openalex.org/W3034081432","https://openalex.org/W3102502737","https://openalex.org/W4214727197","https://openalex.org/W4250549691","https://openalex.org/W4255074070","https://openalex.org/W4302561152","https://openalex.org/W4388252848","https://openalex.org/W6635341826"],"related_works":["https://openalex.org/W1992949259","https://openalex.org/W2037845036","https://openalex.org/W2135896045","https://openalex.org/W2032799661","https://openalex.org/W2884256268","https://openalex.org/W2131025197","https://openalex.org/W2171763327","https://openalex.org/W2154615478","https://openalex.org/W2031892952","https://openalex.org/W3108451992"],"abstract_inverted_index":{"BACKGROUND:":[0],"Gene":[1],"regulatory":[2,348],"network":[3],"(GRN)":[4],"dynamical":[5,122,256,322],"models":[6,303],"are":[7,20,339],"standard":[8,41],"systems":[9],"biology":[10],"tools":[11],"for":[12,275],"the":[13,22,25,46,57,72,82,93,104,113,133,143,146,164,179,202,206,251,296,305,315,321],"mechanistic":[14,199],"understanding":[15,276],"of":[16,24,59,74,87,96,117,135,148,166,201,205,249,258,266,298,307,324],"developmental":[17],"processes":[18],"and":[19,145,219,239,304,350],"enabling":[21],"formalization":[23],"epigenetic":[26],"landscape":[27],"(EL)":[28],"model.":[29],"METHODS:":[30],"In":[31],"this":[32,101],"work":[33],"we":[34,109,226],"propose":[35],"a":[36,130,173,198,222,231,235,255,259,285,328,344],"modeling":[37],"framework":[38,287],"which":[39,337],"integrates":[40],"mathematical":[42],"analyses":[43],"to":[44,53,77,81,103,158,187,190,212,220,242,288,342,346],"extend":[45],"simple":[47,286],"GRN":[48,107,260,302],"Boolean":[49],"model":[50,170,257],"in":[51,63,112,142],"order":[52],"address":[54],"questions":[55],"regarding":[56],"impact":[58],"gene":[60,88],"specific":[61,325],"perturbations":[62],"cell-fate":[64],"decisions":[65],"during":[66,150,178,280],"development.":[67,281,300],"RESULTS:":[68],"We":[69,128,318],"systematically":[70],"tested":[71],"propensity":[73,134,241],"individual":[75],"genes":[76,326,338],"produce":[78,213,243],"qualitative":[79],"changes":[80],"EL":[83,144,182],"induced":[84,216],"by":[85,264,295],"modification":[86],"characteristic":[89,268],"decay":[90],"rates":[91],"reflecting":[92],"temporal":[94],"dynamics":[95],"differentiation":[97,149],"stimuli.":[98],"By":[99],"applying":[100],"approach":[102,289],"flower":[105,152,191,299],"specification":[106],"(FOS-GRN)":[108],"uncovered":[110,172,331],"differences":[111],"functional":[114],"(dynamical)":[115],"role":[116,323],"their":[118],"genes.":[119],"The":[120,247],"observed":[121],"behavior":[123],"correlates":[124],"with":[125,254],"biological":[126],"observables.":[127],"found":[129,227],"relationship":[131,233],"between":[132,139,234],"undergoing":[136],"attractor":[137,161,244],"transitions":[138,162],"attraction":[140],"basins":[141,183],"direction":[147],"early":[151],"development":[153,167],"-":[154],"being":[155,209],"less":[156],"likely":[157,211,341],"induce":[159],"up-stream":[160],"as":[163,292,330],"course":[165],"progresses.":[168],"Our":[169,282],"also":[171],"potential":[174],"mechanism":[175],"at":[176],"play":[177],"transition":[180,218],"from":[181],"defining":[184],"inflorescence":[185],"meristem":[186],"those":[188],"associated":[189,253],"organs":[192],"meristem.":[193],"Additionally,":[194],"our":[195],"analysis":[196],"provided":[197],"interpretation":[200],"homeotic":[203],"property":[204],"ABC":[207],"genes,":[208],"more":[210,340],"both":[214],"an":[215,272],"inter-attractor":[217],"specify":[221],"novel":[223],"attractor.":[224],"Finally,":[225],"that":[228,320],"there":[229],"is":[230,271],"close":[232],"gene's":[236],"topological":[237],"features":[238],"its":[240],"transitions.":[245],"CONCLUSIONS:":[246],"study":[248],"how":[250],"state-space":[252],"can":[261,311],"be":[262,312],"restructured":[263],"modulation":[265],"genes'":[267],"expression":[269],"times":[270],"important":[273],"aid":[274],"underlying":[277],"mechanisms":[278],"occurring":[279],"contribution":[283],"offers":[284],"such":[290],"problem,":[291],"exemplified":[293],"here":[294],"case":[297],"Different":[301],"effect":[306],"diverse":[308],"inductive":[309],"signals":[310],"explored":[313],"within":[314,327],"same":[316],"framework.":[317],"speculate":[319],"GRN,":[329],"here,":[332],"might":[333],"give":[334],"information":[335],"about":[336],"link":[343],"module":[345],"other":[347],"circuits":[349],"signaling":[351],"transduction":[352],"pathways.":[353]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":8},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":1}],"updated_date":"2026-04-29T09:16:38.111599","created_date":"2025-10-10T00:00:00"}
