{"id":"https://openalex.org/W2143950009","doi":"https://doi.org/10.1186/s12918-014-0130-2","title":"MetaNET - a web-accessible interactive platform for biological metabolic network analysis","display_name":"MetaNET - a web-accessible interactive platform for biological metabolic network analysis","publication_year":2014,"publication_date":"2014-12-01","ids":{"openalex":"https://openalex.org/W2143950009","doi":"https://doi.org/10.1186/s12918-014-0130-2","mag":"2143950009","pmid":"https://pubmed.ncbi.nlm.nih.gov/25779921"},"language":"en","primary_location":{"id":"doi:10.1186/s12918-014-0130-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12918-014-0130-2","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/s12918-014-0130-2","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/s12918-014-0130-2","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5030503656","display_name":"Pankaj Narang","orcid":null},"institutions":[{"id":"https://openalex.org/I66760702","display_name":"Council of Scientific and Industrial Research","ror":"https://ror.org/021wm7p51","country_code":"IN","type":"government","lineage":["https://openalex.org/I2799351866","https://openalex.org/I4210134808","https://openalex.org/I66760702"]},{"id":"https://openalex.org/I152429107","display_name":"Jawaharlal Nehru University","ror":"https://ror.org/0567v8t28","country_code":"IN","type":"education","lineage":["https://openalex.org/I152429107"]},{"id":"https://openalex.org/I2799982174","display_name":"Open Source Drug Discovery","ror":"https://ror.org/05pvypf90","country_code":"IN","type":"healthcare","lineage":["https://openalex.org/I2799351866","https://openalex.org/I2799982174","https://openalex.org/I4210134808","https://openalex.org/I66760702"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Pankaj Narang","raw_affiliation_strings":["School of Computational & Integrative Sciences, Jawaharlal Nehru University, New Delhi, 110067, India, pankaj27_sit@jnu.ac.in","The Open Source Drug Discovery (OSDD) Consortium, Council of Scientific and Industrial Research, New Delhi, India","School of Computational & Integrative Sciences, Jawaharlal Nehru University, New Delhi, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computational & Integrative Sciences, Jawaharlal Nehru University, New Delhi, 110067, India, pankaj27_sit@jnu.ac.in","institution_ids":[]},{"raw_affiliation_string":"The Open Source Drug Discovery (OSDD) Consortium, Council of Scientific and Industrial Research, New Delhi, India","institution_ids":["https://openalex.org/I2799982174","https://openalex.org/I66760702"]},{"raw_affiliation_string":"School of Computational & Integrative Sciences, Jawaharlal Nehru University, New Delhi, India","institution_ids":["https://openalex.org/I152429107"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079538933","display_name":"Shawez Khan","orcid":"https://orcid.org/0000-0003-1682-4824"},"institutions":[{"id":"https://openalex.org/I152429107","display_name":"Jawaharlal Nehru University","ror":"https://ror.org/0567v8t28","country_code":"IN","type":"education","lineage":["https://openalex.org/I152429107"]},{"id":"https://openalex.org/I66760702","display_name":"Council of Scientific and Industrial Research","ror":"https://ror.org/021wm7p51","country_code":"IN","type":"government","lineage":["https://openalex.org/I2799351866","https://openalex.org/I4210134808","https://openalex.org/I66760702"]},{"id":"https://openalex.org/I2799982174","display_name":"Open Source Drug Discovery","ror":"https://ror.org/05pvypf90","country_code":"IN","type":"healthcare","lineage":["https://openalex.org/I2799351866","https://openalex.org/I2799982174","https://openalex.org/I4210134808","https://openalex.org/I66760702"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Shawez Khan","raw_affiliation_strings":["School of Computational & Integrative Sciences, Jawaharlal Nehru University, New Delhi, 110067, India","The Open Source Drug Discovery (OSDD) Consortium, Council of Scientific and Industrial Research, Anusandhan Bhavan, 2 Rafi Marg, New Delhi, 110001, India","School of Computational & Integrative Sciences, Jawaharlal Nehru University, New Delhi, India","The Open Source Drug Discovery (OSDD) Consortium, Council of Scientific and Industrial Research, New Delhi, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computational & Integrative Sciences, Jawaharlal Nehru University, New Delhi, 110067, India","institution_ids":["https://openalex.org/I152429107"]},{"raw_affiliation_string":"The Open Source Drug Discovery (OSDD) Consortium, Council of Scientific and Industrial Research, Anusandhan Bhavan, 2 Rafi Marg, New Delhi, 110001, India","institution_ids":["https://openalex.org/I2799982174"]},{"raw_affiliation_string":"School of Computational & Integrative Sciences, Jawaharlal Nehru University, New Delhi, India","institution_ids":["https://openalex.org/I152429107"]},{"raw_affiliation_string":"The Open Source Drug Discovery (OSDD) Consortium, Council of Scientific and Industrial Research, New Delhi, India","institution_ids":["https://openalex.org/I2799982174","https://openalex.org/I66760702"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058748317","display_name":"Anmol Jaywant Hemrom","orcid":"https://orcid.org/0000-0003-1770-0401"},"institutions":[{"id":"https://openalex.org/I152429107","display_name":"Jawaharlal Nehru University","ror":"https://ror.org/0567v8t28","country_code":"IN","type":"education","lineage":["https://openalex.org/I152429107"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Anmol Jaywant Hemrom","raw_affiliation_strings":["School of Computational & Integrative Sciences, Jawaharlal Nehru University, New Delhi, 110067, India","School of Computational & Integrative Sciences, Jawaharlal Nehru University New Delhi India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computational & Integrative Sciences, Jawaharlal Nehru University, New Delhi, 110067, India","institution_ids":["https://openalex.org/I152429107"]},{"raw_affiliation_string":"School of Computational & Integrative Sciences, Jawaharlal Nehru University New Delhi India","institution_ids":["https://openalex.org/I152429107"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5045963284","display_name":"Andrew M. Lynn","orcid":"https://orcid.org/0000-0002-2673-1122"},"institutions":[{"id":"https://openalex.org/I66760702","display_name":"Council of Scientific and Industrial Research","ror":"https://ror.org/021wm7p51","country_code":"IN","type":"government","lineage":["https://openalex.org/I2799351866","https://openalex.org/I4210134808","https://openalex.org/I66760702"]},{"id":"https://openalex.org/I152429107","display_name":"Jawaharlal Nehru University","ror":"https://ror.org/0567v8t28","country_code":"IN","type":"education","lineage":["https://openalex.org/I152429107"]},{"id":"https://openalex.org/I2799982174","display_name":"Open Source Drug Discovery","ror":"https://ror.org/05pvypf90","country_code":"IN","type":"healthcare","lineage":["https://openalex.org/I2799351866","https://openalex.org/I2799982174","https://openalex.org/I4210134808","https://openalex.org/I66760702"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Andrew Michael Lynn","raw_affiliation_strings":["School of Computational & Integrative Sciences, Jawaharlal Nehru University, New Delhi, 110067, India","The Open Source Drug Discovery (OSDD) Consortium, Council of Scientific and Industrial Research, Anusandhan Bhavan, 2 Rafi Marg, New Delhi, 110001, India","The Open Source Drug Discovery (OSDD) Consortium, Council of Scientific and Industrial Research, New Delhi, India","School of Computational & Integrative Sciences, Jawaharlal Nehru University, New Delhi, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computational & Integrative Sciences, Jawaharlal Nehru University, New Delhi, 110067, India","institution_ids":["https://openalex.org/I152429107"]},{"raw_affiliation_string":"The Open Source Drug Discovery (OSDD) Consortium, Council of Scientific and Industrial Research, Anusandhan Bhavan, 2 Rafi Marg, New Delhi, 110001, India","institution_ids":["https://openalex.org/I2799982174"]},{"raw_affiliation_string":"The Open Source Drug Discovery (OSDD) Consortium, Council of Scientific and Industrial Research, New Delhi, India","institution_ids":["https://openalex.org/I2799982174","https://openalex.org/I66760702"]},{"raw_affiliation_string":"School of Computational & Integrative Sciences, Jawaharlal Nehru University, New Delhi, India","institution_ids":["https://openalex.org/I152429107"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5030503656"],"corresponding_institution_ids":["https://openalex.org/I152429107","https://openalex.org/I2799982174","https://openalex.org/I66760702"],"apc_list":null,"apc_paid":null,"fwci":0.7114,"has_fulltext":true,"cited_by_count":10,"citation_normalized_percentile":{"value":0.70911858,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"8","issue":"1","first_page":"130","last_page":"130"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9916999936103821,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9916999936103821,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12643","display_name":"Sustainability and Ecological Systems Analysis","score":0.0010000000474974513,"subfield":{"id":"https://openalex.org/subfields/2305","display_name":"Environmental Engineering"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.0006000000284984708,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.7210094332695007},{"id":"https://openalex.org/keywords/metabolic-network","display_name":"Metabolic network","score":0.6831456422805786},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.605212926864624},{"id":"https://openalex.org/keywords/flux-balance-analysis","display_name":"Flux balance analysis","score":0.5180345177650452},{"id":"https://openalex.org/keywords/metabolic-flux-analysis","display_name":"Metabolic flux analysis","score":0.4770069420337677},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.4531644880771637},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.445415735244751},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.4332694411277771},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.23562949895858765},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.15736564993858337},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.13927710056304932},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.1322462558746338}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.7210094332695007},{"id":"https://openalex.org/C101810790","wikidata":"https://www.wikidata.org/wiki/Q2263094","display_name":"Metabolic network","level":2,"score":0.6831456422805786},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.605212926864624},{"id":"https://openalex.org/C167091322","wikidata":"https://www.wikidata.org/wiki/Q5463029","display_name":"Flux balance analysis","level":2,"score":0.5180345177650452},{"id":"https://openalex.org/C160941953","wikidata":"https://www.wikidata.org/wiki/Q6822342","display_name":"Metabolic flux analysis","level":3,"score":0.4770069420337677},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.4531644880771637},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.445415735244751},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.4332694411277771},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.23562949895858765},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.15736564993858337},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.13927710056304932},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.1322462558746338},{"id":"https://openalex.org/C134018914","wikidata":"https://www.wikidata.org/wiki/Q162606","display_name":"Endocrinology","level":1,"score":0.0},{"id":"https://openalex.org/C62231903","wikidata":"https://www.wikidata.org/wiki/Q1057","display_name":"Metabolism","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1186/s12918-014-0130-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12918-014-0130-2","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/s12918-014-0130-2","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},{"id":"pmid:25779921","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25779921","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC systems biology","raw_type":null},{"id":"pmh:oai:europepmc.org:3236821","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4267457","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12918-014-0130-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12918-014-0130-2","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/s12918-014-0130-2","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320721","display_name":"Council of Scientific and Industrial Research, India","ror":"https://ror.org/021wm7p51"},{"id":"https://openalex.org/F4320335267","display_name":"Open Source Drug Discovery","ror":"https://ror.org/05pvypf90"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2143950009.pdf","grobid_xml":"https://content.openalex.org/works/W2143950009.grobid-xml"},"referenced_works_count":40,"referenced_works":["https://openalex.org/W1595961914","https://openalex.org/W1967920557","https://openalex.org/W1976812345","https://openalex.org/W2026089579","https://openalex.org/W2070395061","https://openalex.org/W2075283200","https://openalex.org/W2075919068","https://openalex.org/W2076262841","https://openalex.org/W2078355959","https://openalex.org/W2078775934","https://openalex.org/W2083011190","https://openalex.org/W2090072316","https://openalex.org/W2094491295","https://openalex.org/W2096097217","https://openalex.org/W2096245011","https://openalex.org/W2097588479","https://openalex.org/W2106576546","https://openalex.org/W2111825982","https://openalex.org/W2121514092","https://openalex.org/W2127020923","https://openalex.org/W2138027806","https://openalex.org/W2140040278","https://openalex.org/W2143534289","https://openalex.org/W2143784594","https://openalex.org/W2143861551","https://openalex.org/W2147472054","https://openalex.org/W2149829228","https://openalex.org/W2150908245","https://openalex.org/W2156409537","https://openalex.org/W2158069895","https://openalex.org/W2159482845","https://openalex.org/W2161645441","https://openalex.org/W2163855763","https://openalex.org/W2164111097","https://openalex.org/W2165373392","https://openalex.org/W2167539386","https://openalex.org/W2572861279","https://openalex.org/W2582743722","https://openalex.org/W3145280308","https://openalex.org/W4294216483"],"related_works":["https://openalex.org/W1999460937","https://openalex.org/W2113329733","https://openalex.org/W2341681417","https://openalex.org/W1984242440","https://openalex.org/W1983989854","https://openalex.org/W2133150343","https://openalex.org/W2018212195","https://openalex.org/W2047334633","https://openalex.org/W2070388085","https://openalex.org/W2350881169"],"abstract_inverted_index":{"BACKGROUND:":[0],"Metabolic":[1],"reactions":[2],"have":[3,14,69],"been":[4],"extensively":[5],"studied":[6],"and":[7,31,53,60,77,142,146,172,186,221,237,256],"compiled":[8],"over":[9,191,243],"the":[10,42,168,212,227,232,244],"last":[11],"century.":[12],"These":[13,113],"provided":[15,195],"a":[16,36,62,92,97,207],"theoretical":[17],"base":[18],"to":[19,27,105,110,152,234],"implement":[20],"models,":[21],"simulations":[22,108],"of":[23,44,81,99,117,155,190,214,229],"which":[24,101],"are":[25,47,51,181,194],"used":[26],"identify":[28],"drug":[29,157],"targets":[30],"optimize":[32],"metabolic":[33,45,86,111,216],"throughput":[34],"at":[35,203],"systemic":[37],"level.":[38],"While":[39],"tools":[40,251],"for":[41,65,85,121,183,196],"perturbation":[43],"networks":[46,217],"available,":[48],"their":[49],"applications":[50],"limited":[52],"restricted":[54],"as":[55,177,246,248],"they":[56],"require":[57],"varied":[58],"dependencies":[59],"often":[61],"commercial":[63],"platform":[64,94,160],"full":[66],"functionality.":[67],"We":[68],"developed":[70],"MetaNET,":[71,201],"an":[72,118,187],"open":[73],"source":[74],"user-friendly":[75,208],"platform-independent":[76],"web-accessible":[78,93],"resource":[79],"consisting":[80],"several":[82],"pre-defined":[83,254],"workflows":[84,180],"network":[87],"analysis.":[88,131],"RESULT:":[89],"MetaNET":[90],"is":[91,161],"that":[95],"incorporates":[96],"range":[98],"functions":[100,193],"can":[102],"be":[103],"combined":[104],"produce":[106],"different":[107,250],"related":[109],"networks.":[112],"include":[114],"(i)":[115],"optimization":[116],"objective":[119],"function":[120],"wild":[122],"type":[123],"strain,":[124],"gene/catalyst/reaction":[125],"knock-out/knock-down":[126],"analysis":[127,135,151,213,236],"using":[128,163,253],"flux":[129,133],"balance":[130],"(ii)":[132],"variability":[134],"(iii)":[136],"chemical":[137],"species":[138],"participation":[139],"(iv)":[140],"cycles":[141],"extreme":[143],"paths":[144],"identification":[145,154],"(v)":[147],"choke":[148],"point":[149],"reaction":[150],"facilitate":[153],"potential":[156],"targets.":[158],"The":[159,224],"built":[162],"custom":[164,258],"scripts":[165],"along":[166],"with":[167,240],"open-source":[169],"Galaxy":[170],"workflow":[171],"Systems":[173],"Biology":[174],"Research":[175],"Tool":[176],"components.":[178],"Pre-defined":[179],"available":[182,202],"common":[184],"processes,":[185],"exhaustive":[188],"list":[189],"50":[192],"user":[197],"defined":[198],"workflows.":[199,259],"CONCLUSION:":[200],"http://metanet.osdd.net":[204],",":[205],"provides":[206],"rich":[209],"interface":[210],"allowing":[211],"genome-scale":[215],"under":[218],"various":[219],"genetic":[220],"environmental":[222],"conditions.":[223],"framework":[225],"permits":[226],"storage":[228],"previous":[230],"results,":[231],"ability":[233],"repeat":[235],"share":[238],"results":[239],"other":[241],"users":[242],"internet":[245],"well":[247],"run":[249],"simultaneously":[252],"workflows,":[255],"user-created":[257]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":1}],"updated_date":"2026-04-29T09:16:38.111599","created_date":"2025-10-10T00:00:00"}
