{"id":"https://openalex.org/W2106286319","doi":"https://doi.org/10.1186/s12918-014-0129-8","title":"Topology analysis and visualization of Potyvirus protein-protein interaction network","display_name":"Topology analysis and visualization of Potyvirus protein-protein interaction network","publication_year":2014,"publication_date":"2014-11-19","ids":{"openalex":"https://openalex.org/W2106286319","doi":"https://doi.org/10.1186/s12918-014-0129-8","mag":"2106286319","pmid":"https://pubmed.ncbi.nlm.nih.gov/25409737"},"language":"en","primary_location":{"id":"doi:10.1186/s12918-014-0129-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12918-014-0129-8","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/s12918-014-0129-8","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/s12918-014-0129-8","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5066788987","display_name":"Gabriel Bosque","orcid":null},"institutions":[{"id":"https://openalex.org/I60053951","display_name":"Universitat Polit\u00e8cnica de Val\u00e8ncia","ror":"https://ror.org/01460j859","country_code":"ES","type":"education","lineage":["https://openalex.org/I60053951"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Gabriel Bosque","raw_affiliation_strings":["Institut Universitari d'Autom\u00e0tica i Inform\u00e0tica Industrial, Universitat Polit\u00e8cnica de Val\u00e8ncia, Cam\u00ed de Vera s/n, 46022, Val\u00e8ncia, Spain. gabbosch@upv.es","Institut Universitari d'Autom\u00e0tica i Inform\u00e0tica Industrial, Universitat Polit\u00e8cnica de Val\u00e8ncia, Val\u00e8ncia, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institut Universitari d'Autom\u00e0tica i Inform\u00e0tica Industrial, Universitat Polit\u00e8cnica de Val\u00e8ncia, Cam\u00ed de Vera s/n, 46022, Val\u00e8ncia, Spain. gabbosch@upv.es","institution_ids":[]},{"raw_affiliation_string":"Institut Universitari d'Autom\u00e0tica i Inform\u00e0tica Industrial, Universitat Polit\u00e8cnica de Val\u00e8ncia, Val\u00e8ncia, Spain","institution_ids":["https://openalex.org/I60053951"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036560247","display_name":"Abel Folch\u2010Fortuny","orcid":"https://orcid.org/0000-0001-6845-0807"},"institutions":[{"id":"https://openalex.org/I60053951","display_name":"Universitat Polit\u00e8cnica de Val\u00e8ncia","ror":"https://ror.org/01460j859","country_code":"ES","type":"education","lineage":["https://openalex.org/I60053951"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Abel Folch-Fortuny","raw_affiliation_strings":["Departamento de Estad\u00edstica e Investigaci\u00f3n Operativa Aplicadas y Calidad, Universitat Polit\u00e8cnica de Val\u00e8ncia, Cam\u00ed de Vera, s/n, Edificio 7A, 46022, Val\u00e8ncia, Spain. abfolfor@upv.es","Departamento de Estad\u00edstica e Investigaci\u00f3n Operativa Aplicadas y Calidad, Universitat Polit\u00e8cnica de Val\u00e8ncia, Val\u00e8ncia, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departamento de Estad\u00edstica e Investigaci\u00f3n Operativa Aplicadas y Calidad, Universitat Polit\u00e8cnica de Val\u00e8ncia, Cam\u00ed de Vera, s/n, Edificio 7A, 46022, Val\u00e8ncia, Spain. abfolfor@upv.es","institution_ids":[]},{"raw_affiliation_string":"Departamento de Estad\u00edstica e Investigaci\u00f3n Operativa Aplicadas y Calidad, Universitat Polit\u00e8cnica de Val\u00e8ncia, Val\u00e8ncia, Spain","institution_ids":["https://openalex.org/I60053951"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038936150","display_name":"Jes\u00fas Pic\u00f3","orcid":"https://orcid.org/0000-0003-4144-3521"},"institutions":[{"id":"https://openalex.org/I60053951","display_name":"Universitat Polit\u00e8cnica de Val\u00e8ncia","ror":"https://ror.org/01460j859","country_code":"ES","type":"education","lineage":["https://openalex.org/I60053951"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Jes\u00fas Pic\u00f3","raw_affiliation_strings":["Institut Universitari d'Autom\u00e0tica i Inform\u00e0tica Industrial, Universitat Polit\u00e8cnica de Val\u00e8ncia, Cam\u00ed de Vera s/n, 46022, Val\u00e8ncia, Spain. jpico@ai2.upv.es","Institut Universitari d'Autom\u00e0tica i Inform\u00e0tica Industrial, Universitat Polit\u00e8cnica de Val\u00e8ncia, Val\u00e8ncia, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institut Universitari d'Autom\u00e0tica i Inform\u00e0tica Industrial, Universitat Polit\u00e8cnica de Val\u00e8ncia, Cam\u00ed de Vera s/n, 46022, Val\u00e8ncia, Spain. jpico@ai2.upv.es","institution_ids":[]},{"raw_affiliation_string":"Institut Universitari d'Autom\u00e0tica i Inform\u00e0tica Industrial, Universitat Polit\u00e8cnica de Val\u00e8ncia, Val\u00e8ncia, Spain","institution_ids":["https://openalex.org/I60053951"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038963177","display_name":"Alberto Ferrer","orcid":"https://orcid.org/0000-0001-7244-5947"},"institutions":[{"id":"https://openalex.org/I60053951","display_name":"Universitat Polit\u00e8cnica de Val\u00e8ncia","ror":"https://ror.org/01460j859","country_code":"ES","type":"education","lineage":["https://openalex.org/I60053951"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Alberto Ferrer","raw_affiliation_strings":["Departamento de Estad\u00edstica e Investigaci\u00f3n Operativa Aplicadas y Calidad, Universitat Polit\u00e8cnica de Val\u00e8ncia, Cam\u00ed de Vera, s/n, Edificio 7A, 46022, Val\u00e8ncia, Spain. aferrer@eio.upv.es","Departamento de Estad\u00edstica e Investigaci\u00f3n Operativa Aplicadas y Calidad, Universitat Polit\u00e8cnica de Val\u00e8ncia, Val\u00e8ncia, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departamento de Estad\u00edstica e Investigaci\u00f3n Operativa Aplicadas y Calidad, Universitat Polit\u00e8cnica de Val\u00e8ncia, Cam\u00ed de Vera, s/n, Edificio 7A, 46022, Val\u00e8ncia, Spain. aferrer@eio.upv.es","institution_ids":[]},{"raw_affiliation_string":"Departamento de Estad\u00edstica e Investigaci\u00f3n Operativa Aplicadas y Calidad, Universitat Polit\u00e8cnica de Val\u00e8ncia, Val\u00e8ncia, Spain","institution_ids":["https://openalex.org/I60053951"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5001395924","display_name":"Santiago F. Elena","orcid":"https://orcid.org/0000-0001-8249-5593"},"institutions":[{"id":"https://openalex.org/I1308548392","display_name":"Santa Fe Institute","ror":"https://ror.org/01arysc35","country_code":"US","type":"funder","lineage":["https://openalex.org/I1308548392"]},{"id":"https://openalex.org/I60053951","display_name":"Universitat Polit\u00e8cnica de Val\u00e8ncia","ror":"https://ror.org/01460j859","country_code":"ES","type":"education","lineage":["https://openalex.org/I60053951"]}],"countries":["ES","US"],"is_corresponding":false,"raw_author_name":"Santiago F Elena","raw_affiliation_strings":["Instituto de Biolog\u00eda Molecular y Celular de Plantas, Consejo Superior de Investigaciones Cient\u00edficas-Universitat Polit\u00e8cnica de Val\u00e8ncia, Campus UPV CPI 8E, Ingeniero Fausto Elio s/n, 46022, Val\u00e8ncia, Spain. sfelena@ibmcp.upv.es","The Santa Fe Institute, Santa Fe, NM, 87501, USA. sfelena@ibmcp.upv.es","Instituto de Biolog\u00eda Molecular y Celular de Plantas, Consejo Superior de Investigaciones Cient\u00edficas-Universitat Polit\u00e8cnica de Val\u00e8ncia, Campus UPV CPI 8E, Ingeniero Fausto Elio s/n, Val\u00e8ncia, Spain","The Santa Fe Institute, Santa Fe, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Instituto de Biolog\u00eda Molecular y Celular de Plantas, Consejo Superior de Investigaciones Cient\u00edficas-Universitat Polit\u00e8cnica de Val\u00e8ncia, Campus UPV CPI 8E, Ingeniero Fausto Elio s/n, 46022, Val\u00e8ncia, Spain. sfelena@ibmcp.upv.es","institution_ids":[]},{"raw_affiliation_string":"The Santa Fe Institute, Santa Fe, NM, 87501, USA. sfelena@ibmcp.upv.es","institution_ids":[]},{"raw_affiliation_string":"Instituto de Biolog\u00eda Molecular y Celular de Plantas, Consejo Superior de Investigaciones Cient\u00edficas-Universitat Polit\u00e8cnica de Val\u00e8ncia, Campus UPV CPI 8E, Ingeniero Fausto Elio s/n, Val\u00e8ncia, Spain","institution_ids":["https://openalex.org/I60053951"]},{"raw_affiliation_string":"The Santa Fe Institute, Santa Fe, USA","institution_ids":["https://openalex.org/I1308548392"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5066788987"],"corresponding_institution_ids":["https://openalex.org/I60053951"],"apc_list":null,"apc_paid":null,"fwci":4.656,"has_fulltext":true,"cited_by_count":44,"citation_normalized_percentile":{"value":0.94139854,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"8","issue":"1","first_page":"129","last_page":"129"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10494","display_name":"Plant Virus Research Studies","score":0.4796999990940094,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10494","display_name":"Plant Virus Research Studies","score":0.4796999990940094,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.10700000077486038,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.1006999984383583,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interaction-network","display_name":"Interaction network","score":0.7341829538345337},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.7107132077217102},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.585121750831604},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.584175705909729},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.46579158306121826},{"id":"https://openalex.org/keywords/viral-protein","display_name":"Viral protein","score":0.4620620012283325},{"id":"https://openalex.org/keywords/host","display_name":"Host (biology)","score":0.4368463158607483},{"id":"https://openalex.org/keywords/protein-interaction-networks","display_name":"Protein Interaction Networks","score":0.4342602491378784},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.42536231875419617},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.4152473211288452},{"id":"https://openalex.org/keywords/virus","display_name":"Virus","score":0.2970049977302551},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2520739436149597},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.14858540892601013}],"concepts":[{"id":"https://openalex.org/C55105296","wikidata":"https://www.wikidata.org/wiki/Q841382","display_name":"Interaction network","level":3,"score":0.7341829538345337},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.7107132077217102},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.585121750831604},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.584175705909729},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.46579158306121826},{"id":"https://openalex.org/C2780879997","wikidata":"https://www.wikidata.org/wiki/Q952587","display_name":"Viral protein","level":3,"score":0.4620620012283325},{"id":"https://openalex.org/C126831891","wikidata":"https://www.wikidata.org/wiki/Q221673","display_name":"Host (biology)","level":2,"score":0.4368463158607483},{"id":"https://openalex.org/C2909613950","wikidata":"https://www.wikidata.org/wiki/Q158695","display_name":"Protein Interaction Networks","level":3,"score":0.4342602491378784},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.42536231875419617},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.4152473211288452},{"id":"https://openalex.org/C2522874641","wikidata":"https://www.wikidata.org/wiki/Q808","display_name":"Virus","level":2,"score":0.2970049977302551},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2520739436149597},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.14858540892601013},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D017800","descriptor_name":"Potyvirus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017800","descriptor_name":"Potyvirus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017800","descriptor_name":"Potyvirus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017800","descriptor_name":"Potyvirus","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D017800","descriptor_name":"Potyvirus","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D017800","descriptor_name":"Potyvirus","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D058605","descriptor_name":"Host-Derived Cellular Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D058605","descriptor_name":"Host-Derived Cellular Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D058605","descriptor_name":"Host-Derived Cellular Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D058605","descriptor_name":"Host-Derived Cellular Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D058605","descriptor_name":"Host-Derived Cellular Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D058605","descriptor_name":"Host-Derived Cellular Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/s12918-014-0129-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12918-014-0129-8","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/s12918-014-0129-8","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},{"id":"pmid:25409737","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25409737","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC systems biology","raw_type":null},{"id":"pmh:oai:digital.csic.es:10261/108812","is_oa":true,"landing_page_url":"http://hdl.handle.net/10261/108812","pdf_url":null,"source":{"id":"https://openalex.org/S4306400616","display_name":"DIGITAL.CSIC (Spanish National Research Council (CSIC))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I134820265","host_organization_name":"Consejo Superior de Investigaciones Cient\u00edficas","host_organization_lineage":["https://openalex.org/I134820265"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Art\u00edculo"},{"id":"pmh:oai:pubmedcentral.nih.gov:4251984","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4251984","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Syst Biol","raw_type":"Text"},{"id":"pmh:oai:riunet.upv.es:10251/62283","is_oa":true,"landing_page_url":"http://hdl.handle.net/10251/62283","pdf_url":null,"source":{"id":"https://openalex.org/S4306401500","display_name":"RiuNet (Politechnical University of Valencia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I60053951","host_organization_name":"Universitat Polit\u00e8cnica de Val\u00e8ncia","host_organization_lineage":["https://openalex.org/I60053951"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1186/s12918-014-0129-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12918-014-0129-8","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/s12918-014-0129-8","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G409907369","display_name":null,"funder_award_id":"BES-2012-053772","funder_id":"https://openalex.org/F4320321837","funder_display_name":"Ministerio de Econom\u00eda y Competitividad"},{"id":"https://openalex.org/G4750085520","display_name":null,"funder_award_id":"DPI2011-28112-C04-01","funder_id":"https://openalex.org/F4320321837","funder_display_name":"Ministerio de Econom\u00eda y Competitividad"},{"id":"https://openalex.org/G6333174936","display_name":null,"funder_award_id":"DPI2011-28112-C04-02","funder_id":"https://openalex.org/F4320321837","funder_display_name":"Ministerio de Econom\u00eda y Competitividad"},{"id":"https://openalex.org/G7856026147","display_name":null,"funder_award_id":"BFU2012-30805","funder_id":"https://openalex.org/F4320321837","funder_display_name":"Ministerio de Econom\u00eda y Competitividad"}],"funders":[{"id":"https://openalex.org/F4320321837","display_name":"Ministerio de Econom\u00eda y Competitividad","ror":"https://ror.org/034900433"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2106286319.pdf","grobid_xml":"https://content.openalex.org/works/W2106286319.grobid-xml"},"referenced_works_count":56,"referenced_works":["https://openalex.org/W1580023291","https://openalex.org/W1598543580","https://openalex.org/W1831339721","https://openalex.org/W1947462805","https://openalex.org/W1965169361","https://openalex.org/W1974944535","https://openalex.org/W1976937534","https://openalex.org/W1977186059","https://openalex.org/W1994803330","https://openalex.org/W1995323499","https://openalex.org/W1998334734","https://openalex.org/W1999389303","https://openalex.org/W2008026945","https://openalex.org/W2010022403","https://openalex.org/W2013923998","https://openalex.org/W2021947220","https://openalex.org/W2022359129","https://openalex.org/W2024103356","https://openalex.org/W2037036397","https://openalex.org/W2039512885","https://openalex.org/W2040956707","https://openalex.org/W2047693963","https://openalex.org/W2052660260","https://openalex.org/W2065304353","https://openalex.org/W2067305633","https://openalex.org/W2070660050","https://openalex.org/W2070722739","https://openalex.org/W2072832871","https://openalex.org/W2074892999","https://openalex.org/W2080929480","https://openalex.org/W2084554884","https://openalex.org/W2089031128","https://openalex.org/W2089467986","https://openalex.org/W2096759888","https://openalex.org/W2096801391","https://openalex.org/W2101998831","https://openalex.org/W2105295920","https://openalex.org/W2110573616","https://openalex.org/W2112090702","https://openalex.org/W2118446779","https://openalex.org/W2124637492","https://openalex.org/W2126498993","https://openalex.org/W2130832525","https://openalex.org/W2137002821","https://openalex.org/W2138397600","https://openalex.org/W2147508518","https://openalex.org/W2148606196","https://openalex.org/W2150021264","https://openalex.org/W2159675211","https://openalex.org/W2163480486","https://openalex.org/W2167602547","https://openalex.org/W2167869241","https://openalex.org/W2169482061","https://openalex.org/W2403706608","https://openalex.org/W3151029369","https://openalex.org/W4254630790"],"related_works":["https://openalex.org/W4229728790","https://openalex.org/W2800059693","https://openalex.org/W1841073402","https://openalex.org/W4377086792","https://openalex.org/W2414873431","https://openalex.org/W2145100112","https://openalex.org/W2137238644","https://openalex.org/W4384303460","https://openalex.org/W37860747","https://openalex.org/W82005175"],"abstract_inverted_index":{"BACKGROUND:":[0],"One":[1],"of":[2,6,11,24,48,50,57,62,73,86,91,98,157,175,186,208,232,292],"the":[3,9,22,32,45,55,71,87,92,151,170,184,201,205,209,223,230,237,243,264,290,300,322],"central":[4],"interests":[5],"Virology":[7],"is":[8,69,81],"identification":[10,72],"host":[12,42,206,225,265,311],"factors":[13,25,43],"that":[14,218,251,278],"contribute":[15],"to":[16,44,162,330,335],"virus":[17,106,165],"infection.":[18],"Despite":[19],"tremendous":[20],"efforts,":[21],"list":[23],"identified":[26],"remains":[27],"limited.":[28],"With":[29],"omics":[30],"techniques,":[31],"focus":[33,306],"has":[34],"changed":[35],"from":[36,109],"identifying":[37],"and":[38,61,75,94,116,140,188,199,258,334],"thoroughly":[39],"characterizing":[40],"individual":[41],"simultaneous":[46],"analysis":[47],"thousands":[49],"interactions,":[51],"framing":[52],"them":[53],"on":[54,105,204,236,299],"context":[56],"protein-protein":[58,107,122,166,172,226,280],"interaction":[59,123,167,173,227,281],"networks":[60,282],"transcriptional":[63],"regulatory":[64],"networks.":[65],"This":[66],"new":[67,195,326],"perspective":[68],"allowing":[70],"direct":[74],"indirect":[76],"viral":[77,214,239,247,304],"targets.":[78],"Such":[79],"information":[80,104],"available":[82],"for":[83,119,197],"several":[84,319],"members":[85],"Potyviridae":[88],"family,":[89],"one":[90],"largest":[93,171],"more":[95,271],"important":[96],"families":[97],"plant":[99],"viruses.":[100],"RESULTS:":[101],"After":[102],"collecting":[103],"interactions":[108],"different":[110],"potyviruses,":[111],"we":[112,191,249],"have":[113,160,192],"processed":[114],"it":[115,118],"used":[117],"inferring":[120],"a":[121,130,137,154,178,194],"network.":[124],"All":[125],"proteins":[126,135,253,269,288,305,320],"are":[127,141,146,283],"connected":[128,143],"into":[129,169],"single":[131],"network":[132,152,168,174,207,266],"component.":[133],"Some":[134,303],"show":[136],"high":[138],"degree":[139,156],"highly":[142,284],"while":[144,267,313],"others":[145,314],"much":[147],"less":[148],"connected,":[149,285],"with":[150,286],"showing":[153],"significant":[155],"dissortativeness.":[158],"We":[159,216],"attempted":[161],"integrate":[163],"this":[164,233],"Arabidopsis":[176],"thaliana,":[177],"susceptible":[179],"laboratory":[180],"host.":[181],"To":[182],"make":[183],"interpretation":[185],"data":[187,327],"results":[189],"easier,":[190],"developed":[193],"approach":[196],"visualizing":[198],"analyzing":[200],"dynamic":[202],"spread":[203,234,244,254],"local":[210,219,272],"perturbations":[211,220],"induced":[212],"by":[213,260],"proteins.":[215,240],"found":[217,250],"can":[221],"reach":[222],"entire":[224],"network,":[228],"although":[229],"efficiency":[231],"depends":[235],"particular":[238],"By":[241],"comparing":[242],"dynamics":[245],"among":[246,318],"proteins,":[248],"some":[252,287],"their":[255,307],"effects":[256],"fast":[257],"efficiently":[259],"attacking":[261],"hubs":[262,312],"in":[263,309],"other":[268],"exert":[270],"effects.":[273],"CONCLUSIONS:":[274],"Our":[275],"findings":[276],"confirm":[277],"potyvirus":[279],"playing":[289],"role":[291],"hubs.":[293],"Several":[294],"topological":[295],"parameters":[296],"depend":[297],"linearly":[298],"protein":[301],"degree.":[302],"effect":[308,317],"only":[310],"diversify":[315],"its":[316],"at":[321],"first":[323],"step.":[324],"Future":[325],"will":[328],"help":[329],"refine":[331],"our":[332,337],"model":[333],"improve":[336],"predictions.":[338]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":4}],"updated_date":"2026-04-29T09:16:38.111599","created_date":"2025-10-10T00:00:00"}
