{"id":"https://openalex.org/W2144009916","doi":"https://doi.org/10.1186/s12918-014-0110-6","title":"Reconstruction and modeling protein translocation and compartmentalization in Escherichia coli at the genome-scale","display_name":"Reconstruction and modeling protein translocation and compartmentalization in Escherichia coli at the genome-scale","publication_year":2014,"publication_date":"2014-09-17","ids":{"openalex":"https://openalex.org/W2144009916","doi":"https://doi.org/10.1186/s12918-014-0110-6","mag":"2144009916","pmid":"https://pubmed.ncbi.nlm.nih.gov/25227965"},"language":"en","primary_location":{"id":"doi:10.1186/s12918-014-0110-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12918-014-0110-6","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/s12918-014-0110-6","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/s12918-014-0110-6","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5045539808","display_name":"Joanne K. Liu","orcid":null},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California, San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Joanne K Liu","raw_affiliation_strings":["Bioinformatics and Systems Biology, University of California San Diego, 9500 Gilman Drive, Dept. 0419, La Jolla, 92093, CA, USA"],"affiliations":[{"raw_affiliation_string":"Bioinformatics and Systems Biology, University of California San Diego, 9500 Gilman Drive, Dept. 0419, La Jolla, 92093, CA, USA","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051432302","display_name":"Edward J. O\u2019Brien","orcid":null},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California, San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Edward J O\u2019Brien","raw_affiliation_strings":["Bioinformatics and Systems Biology, University of California San Diego, 9500 Gilman Drive, Dept. 0419, La Jolla, 92093, CA, USA"],"affiliations":[{"raw_affiliation_string":"Bioinformatics and Systems Biology, University of California San Diego, 9500 Gilman Drive, Dept. 0419, La Jolla, 92093, CA, USA","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057750162","display_name":"Joshua A. Lerman","orcid":"https://orcid.org/0000-0003-0377-2674"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California, San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joshua A Lerman","raw_affiliation_strings":["Bioinformatics and Systems Biology, University of California San Diego, 9500 Gilman Drive, Dept. 0419, La Jolla, 92093, CA, USA"],"affiliations":[{"raw_affiliation_string":"Bioinformatics and Systems Biology, University of California San Diego, 9500 Gilman Drive, Dept. 0419, La Jolla, 92093, CA, USA","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072461088","display_name":"Karsten Zengler","orcid":"https://orcid.org/0000-0002-8062-3296"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California, San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]},{"id":"https://openalex.org/I96673099","display_name":"Technical University of Denmark","ror":"https://ror.org/04qtj9h94","country_code":"DK","type":"education","lineage":["https://openalex.org/I96673099"]},{"id":"https://openalex.org/I2801134892","display_name":"Novo Nordisk Foundation","ror":"https://ror.org/04txyc737","country_code":"DK","type":"facility","lineage":["https://openalex.org/I2801134892"]}],"countries":["DK","US"],"is_corresponding":false,"raw_author_name":"Karsten Zengler","raw_affiliation_strings":["Department of Bioengineering, University of California San Diego, 9500 Gilman Drive, Mail Code 0412, La Jolla, 92093, CA, USA","Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Lyngby, Denmark"],"affiliations":[{"raw_affiliation_string":"Department of Bioengineering, University of California San Diego, 9500 Gilman Drive, Mail Code 0412, La Jolla, 92093, CA, USA","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Lyngby, Denmark","institution_ids":["https://openalex.org/I2801134892","https://openalex.org/I96673099"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051097609","display_name":"Bernhard \u00d8. Palsson","orcid":"https://orcid.org/0000-0003-2357-6785"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California, San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]},{"id":"https://openalex.org/I96673099","display_name":"Technical University of Denmark","ror":"https://ror.org/04qtj9h94","country_code":"DK","type":"education","lineage":["https://openalex.org/I96673099"]},{"id":"https://openalex.org/I2801134892","display_name":"Novo Nordisk Foundation","ror":"https://ror.org/04txyc737","country_code":"DK","type":"facility","lineage":["https://openalex.org/I2801134892"]}],"countries":["DK","US"],"is_corresponding":false,"raw_author_name":"Bernhard O Palsson","raw_affiliation_strings":["Bioinformatics and Systems Biology, University of California San Diego, 9500 Gilman Drive, Dept. 0419, La Jolla, 92093, CA, USA","Department of Bioengineering, University of California San Diego, 9500 Gilman Drive, Mail Code 0412, La Jolla, 92093, CA, USA","Department of Pediatrics, University of California San Diego, 9500 Gilman Drive, Mail Code 0412, La Jolla, 02093, CA, USA","Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Lyngby, Denmark"],"affiliations":[{"raw_affiliation_string":"Bioinformatics and Systems Biology, University of California San Diego, 9500 Gilman Drive, Dept. 0419, La Jolla, 92093, CA, USA","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"Department of Bioengineering, University of California San Diego, 9500 Gilman Drive, Mail Code 0412, La Jolla, 92093, CA, USA","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"Department of Pediatrics, University of California San Diego, 9500 Gilman Drive, Mail Code 0412, La Jolla, 02093, CA, USA","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Lyngby, Denmark","institution_ids":["https://openalex.org/I2801134892","https://openalex.org/I96673099"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5062042072","display_name":"Adam M. Feist","orcid":"https://orcid.org/0000-0002-8630-4800"},"institutions":[{"id":"https://openalex.org/I2801134892","display_name":"Novo Nordisk Foundation","ror":"https://ror.org/04txyc737","country_code":"DK","type":"facility","lineage":["https://openalex.org/I2801134892"]},{"id":"https://openalex.org/I96673099","display_name":"Technical University of Denmark","ror":"https://ror.org/04qtj9h94","country_code":"DK","type":"education","lineage":["https://openalex.org/I96673099"]},{"id":"https://openalex.org/I36258959","display_name":"University of California, San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["DK","US"],"is_corresponding":false,"raw_author_name":"Adam M Feist","raw_affiliation_strings":["Department of Bioengineering, University of California San Diego, 9500 Gilman Drive, Mail Code 0412, La Jolla, 92093, CA, USA","Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Lyngby, Denmark"],"affiliations":[{"raw_affiliation_string":"Department of Bioengineering, University of California San Diego, 9500 Gilman Drive, Mail Code 0412, La Jolla, 92093, CA, USA","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Lyngby, Denmark","institution_ids":["https://openalex.org/I2801134892","https://openalex.org/I96673099"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5045539808"],"corresponding_institution_ids":["https://openalex.org/I36258959"],"apc_list":null,"apc_paid":null,"fwci":5.1336,"has_fulltext":true,"cited_by_count":94,"citation_normalized_percentile":{"value":0.96402323,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"8","issue":"1","first_page":"110","last_page":"110"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/compartmentalization","display_name":"Compartmentalization (fire protection)","score":0.7590105533599854},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.6961507797241211},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6390559673309326},{"id":"https://openalex.org/keywords/escherichia-coli","display_name":"Escherichia coli","score":0.628540575504303},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5378590822219849},{"id":"https://openalex.org/keywords/escherichia-coli-proteins","display_name":"Escherichia coli Proteins","score":0.5194261074066162},{"id":"https://openalex.org/keywords/chromosomal-translocation","display_name":"Chromosomal translocation","score":0.4831082820892334},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.47839415073394775},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4777859151363373},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.31144464015960693},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.17539015412330627},{"id":"https://openalex.org/keywords/enzyme","display_name":"Enzyme","score":0.1063222587108612},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.10361576080322266},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.10177576541900635}],"concepts":[{"id":"https://openalex.org/C110455231","wikidata":"https://www.wikidata.org/wiki/Q897788","display_name":"Compartmentalization (fire protection)","level":3,"score":0.7590105533599854},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.6961507797241211},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6390559673309326},{"id":"https://openalex.org/C547475151","wikidata":"https://www.wikidata.org/wiki/Q25419","display_name":"Escherichia coli","level":3,"score":0.628540575504303},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5378590822219849},{"id":"https://openalex.org/C2908821069","wikidata":"https://www.wikidata.org/wiki/Q25419","display_name":"Escherichia coli Proteins","level":4,"score":0.5194261074066162},{"id":"https://openalex.org/C138626823","wikidata":"https://www.wikidata.org/wiki/Q916504","display_name":"Chromosomal translocation","level":3,"score":0.4831082820892334},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.47839415073394775},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4777859151363373},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.31144464015960693},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.17539015412330627},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.1063222587108612},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.10361576080322266},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.10177576541900635},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D002462","descriptor_name":"Cell Membrane","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002462","descriptor_name":"Cell Membrane","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002462","descriptor_name":"Cell Membrane","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015964","descriptor_name":"Gene Expression Regulation, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015964","descriptor_name":"Gene Expression Regulation, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015964","descriptor_name":"Gene Expression Regulation, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015964","descriptor_name":"Gene Expression Regulation, Bacterial","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015964","descriptor_name":"Gene Expression Regulation, Bacterial","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015964","descriptor_name":"Gene Expression Regulation, Bacterial","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018272","descriptor_name":"Porins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D018272","descriptor_name":"Porins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D018272","descriptor_name":"Porins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D021381","descriptor_name":"Protein Transport","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D021381","descriptor_name":"Protein Transport","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D021381","descriptor_name":"Protein Transport","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D021381","descriptor_name":"Protein Transport","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D021381","descriptor_name":"Protein Transport","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D021381","descriptor_name":"Protein Transport","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1186/s12918-014-0110-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12918-014-0110-6","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/s12918-014-0110-6","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},{"id":"pmid:25227965","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25227965","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC systems biology","raw_type":null},{"id":"pmh:oai:osti.gov:1626877","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1626877","pdf_url":"https://www.osti.gov/servlets/purl/1626877","source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:ark:/13030/qt6045s2hv","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:escholarship.org/ark:/13030/qt6045s2hv","is_oa":false,"landing_page_url":"https://escholarship.org/uc/item/6045s2hv","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC systems biology, vol 8, iss 1","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:4177180","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4177180","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Syst Biol","raw_type":"Text"},{"id":"pmh:oai:pure.atira.dk:publications/5fc6b761-46d6-4f5e-8eea-e149262bda3f","is_oa":true,"landing_page_url":"https://orbit.dtu.dk/en/publications/5fc6b761-46d6-4f5e-8eea-e149262bda3f","pdf_url":null,"source":{"id":"https://openalex.org/S4306400705","display_name":"Technical University of Denmark, DTU Orbit (Technical University of Denmark, DTU)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I96673099","host_organization_name":"Technical University of Denmark","host_organization_lineage":["https://openalex.org/I96673099"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Liu , J K , O\u2019Brien , E J , Lerman , J A , Zengler , K , Palsson , B &amp; Feist , A 2014 , ' Reconstruction and modeling protein translocation and compartmentalization in Escherichia coli at the genome-scale ' , BMC Systems Biology , vol. 8 , no. 1 . https://doi.org/10.1186/s12918-014-0110-6","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s12918-014-0110-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12918-014-0110-6","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/s12918-014-0110-6","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1304534115","display_name":null,"funder_award_id":"T32GM8806","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2486796602","display_name":null,"funder_award_id":"DE-SC0002009","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G3948645045","display_name":null,"funder_award_id":"Grant","funder_id":"https://openalex.org/F4320325957","funder_display_name":"Novo Nordisk Fonden"},{"id":"https://openalex.org/G570945096","display_name":null,"funder_award_id":"DE-SC0004917","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G6345853531","display_name":null,"funder_award_id":"unknown","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8055720154","display_name":null,"funder_award_id":"GM057089","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320322436","display_name":"Novo Nordisk","ror":"https://ror.org/0435rc536"},{"id":"https://openalex.org/F4320325957","display_name":"Novo Nordisk Fonden","ror":"https://ror.org/04txyc737"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2144009916.pdf","grobid_xml":"https://content.openalex.org/works/W2144009916.grobid-xml"},"referenced_works_count":76,"referenced_works":["https://openalex.org/W208046272","https://openalex.org/W1485108282","https://openalex.org/W1512810258","https://openalex.org/W1546001194","https://openalex.org/W1575745715","https://openalex.org/W1577922858","https://openalex.org/W1602952910","https://openalex.org/W1895859721","https://openalex.org/W1919647973","https://openalex.org/W1973002597","https://openalex.org/W1981414272","https://openalex.org/W1985161570","https://openalex.org/W1988143475","https://openalex.org/W1988357511","https://openalex.org/W1990580956","https://openalex.org/W1991795057","https://openalex.org/W1992470956","https://openalex.org/W1993077659","https://openalex.org/W1998777312","https://openalex.org/W1999491456","https://openalex.org/W2010816372","https://openalex.org/W2010855847","https://openalex.org/W2016471379","https://openalex.org/W2025202547","https://openalex.org/W2029820720","https://openalex.org/W2040334106","https://openalex.org/W2044727564","https://openalex.org/W2044935306","https://openalex.org/W2049196570","https://openalex.org/W2052779789","https://openalex.org/W2053460598","https://openalex.org/W2066537459","https://openalex.org/W2073075045","https://openalex.org/W2073269369","https://openalex.org/W2073959208","https://openalex.org/W2075283200","https://openalex.org/W2075489324","https://openalex.org/W2076974004","https://openalex.org/W2077091285","https://openalex.org/W2081114359","https://openalex.org/W2081781433","https://openalex.org/W2085779944","https://openalex.org/W2087421551","https://openalex.org/W2096245011","https://openalex.org/W2102948971","https://openalex.org/W2104413400","https://openalex.org/W2108078368","https://openalex.org/W2113234366","https://openalex.org/W2114511757","https://openalex.org/W2117467324","https://openalex.org/W2119492479","https://openalex.org/W2120061656","https://openalex.org/W2122334299","https://openalex.org/W2122860350","https://openalex.org/W2124444587","https://openalex.org/W2124737787","https://openalex.org/W2128014041","https://openalex.org/W2133613174","https://openalex.org/W2136275538","https://openalex.org/W2136568972","https://openalex.org/W2138683225","https://openalex.org/W2139270713","https://openalex.org/W2141899085","https://openalex.org/W2143861551","https://openalex.org/W2148033653","https://openalex.org/W2151070439","https://openalex.org/W2152164604","https://openalex.org/W2152770371","https://openalex.org/W2157457604","https://openalex.org/W2162792752","https://openalex.org/W2170298003","https://openalex.org/W2319222312","https://openalex.org/W2605068739","https://openalex.org/W2615823793","https://openalex.org/W4212920271","https://openalex.org/W6832094088"],"related_works":["https://openalex.org/W4234653771","https://openalex.org/W3094600310","https://openalex.org/W2754721450","https://openalex.org/W2135850184","https://openalex.org/W2252376317","https://openalex.org/W2022891666","https://openalex.org/W2727878429","https://openalex.org/W2469250300","https://openalex.org/W1479745535","https://openalex.org/W3208158820"],"abstract_inverted_index":{"iJL1678-ME":[0,37,68],"enables":[1],"the":[2,31,36,42,58,74],"computation":[3,10],"of":[4,11,30,40,45,60,65,76],"cellular":[5,19,47,77],"phenotypes":[6],"through":[7],"an":[8,62],"integrated":[9],"proteome":[12],"composition,":[13,49],"abundance,":[14],"and":[15,24,28,50],"activity":[16],"in":[17,79],"four":[18],"compartments":[20],"(cytoplasm,":[21],"periplasm,":[22],"inner":[23],"outer":[25],"membrane).":[26],"Reconstruction":[27],"validation":[29],"model":[32],"has":[33],"demonstrated":[34],"that":[35,51],"is":[38],"capable":[39],"capturing":[41],"functional":[43],"content":[44],"membranes,":[46],"compartment-specific":[48],"it":[52],"can":[53],"be":[54],"utilized":[55],"to":[56],"examine":[57],"effect":[59],"perturbing":[61],"expanded":[63],"set":[64],"network":[66],"components.":[67],"takes":[69],"a":[70],"notable":[71],"step":[72],"towards":[73],"inclusion":[75],"ultra-structure":[78],"genome-scale":[80],"models.":[81]},"counts_by_year":[{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":15},{"year":2020,"cited_by_count":12},{"year":2019,"cited_by_count":8},{"year":2018,"cited_by_count":10},{"year":2017,"cited_by_count":13},{"year":2016,"cited_by_count":8},{"year":2015,"cited_by_count":15}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
