{"id":"https://openalex.org/W4411846840","doi":"https://doi.org/10.1186/s12911-025-03056-x","title":"A deep learning model for predicting systemic lupus erythematosus-associated epitopes","display_name":"A deep learning model for predicting systemic lupus erythematosus-associated epitopes","publication_year":2025,"publication_date":"2025-07-01","ids":{"openalex":"https://openalex.org/W4411846840","doi":"https://doi.org/10.1186/s12911-025-03056-x","pmid":"https://pubmed.ncbi.nlm.nih.gov/40598008"},"language":"en","primary_location":{"id":"doi:10.1186/s12911-025-03056-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-025-03056-x","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/counter/pdf/10.1186/s12911-025-03056-x","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcmedinformdecismak.biomedcentral.com/counter/pdf/10.1186/s12911-025-03056-x","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5108879593","display_name":"Jiale He","orcid":null},"institutions":[{"id":"https://openalex.org/I200296433","display_name":"Chinese Academy of Medical Sciences & Peking Union Medical College","ror":"https://ror.org/02drdmm93","country_code":"CN","type":"education","lineage":["https://openalex.org/I200296433"]},{"id":"https://openalex.org/I4210146387","display_name":"Guang\u2019anmen Hospital","ror":"https://ror.org/04gjmb875","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210146387"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiale He","raw_affiliation_strings":["Department of Rheumatology, Guang'anmen Hospital, China Academy of Chinese Medical Sciences, Xicheng District, Beijing, 100053, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Rheumatology, Guang'anmen Hospital, China Academy of Chinese Medical Sciences, Xicheng District, Beijing, 100053, China","institution_ids":["https://openalex.org/I200296433","https://openalex.org/I4210146387"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049199483","display_name":"Zixia Liu","orcid":"https://orcid.org/0000-0003-3550-0163"},"institutions":[{"id":"https://openalex.org/I200296433","display_name":"Chinese Academy of Medical Sciences & Peking Union Medical College","ror":"https://ror.org/02drdmm93","country_code":"CN","type":"education","lineage":["https://openalex.org/I200296433"]},{"id":"https://openalex.org/I4210146387","display_name":"Guang\u2019anmen Hospital","ror":"https://ror.org/04gjmb875","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210146387"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zixia Liu","raw_affiliation_strings":["Department of Rheumatology, Guang'anmen Hospital, China Academy of Chinese Medical Sciences, Xicheng District, Beijing, 100053, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Rheumatology, Guang'anmen Hospital, China Academy of Chinese Medical Sciences, Xicheng District, Beijing, 100053, China","institution_ids":["https://openalex.org/I200296433","https://openalex.org/I4210146387"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5017142120","display_name":"Xiaopo Tang","orcid":"https://orcid.org/0000-0002-0569-4502"},"institutions":[{"id":"https://openalex.org/I200296433","display_name":"Chinese Academy of Medical Sciences & Peking Union Medical College","ror":"https://ror.org/02drdmm93","country_code":"CN","type":"education","lineage":["https://openalex.org/I200296433"]},{"id":"https://openalex.org/I4210146387","display_name":"Guang\u2019anmen Hospital","ror":"https://ror.org/04gjmb875","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210146387"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xiaopo Tang","raw_affiliation_strings":["Department of Rheumatology, Guang'anmen Hospital, China Academy of Chinese Medical Sciences, Xicheng District, Beijing, 100053, China. tangxiaopo@163.com"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Rheumatology, Guang'anmen Hospital, China Academy of Chinese Medical Sciences, Xicheng District, Beijing, 100053, China. tangxiaopo@163.com","institution_ids":["https://openalex.org/I200296433","https://openalex.org/I4210146387"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5017142120"],"corresponding_institution_ids":["https://openalex.org/I200296433","https://openalex.org/I4210146387"],"apc_list":{"value":2690,"currency":"USD","value_usd":2690},"apc_paid":{"value":2690,"currency":"USD","value_usd":2690},"fwci":1.6361,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.83210931,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":98},"biblio":{"volume":"25","issue":"1","first_page":"230","last_page":"230"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.5023000240325928,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.5023000240325928,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10308","display_name":"Systemic Lupus Erythematosus Research","score":0.31949999928474426,"subfield":{"id":"https://openalex.org/subfields/2745","display_name":"Rheumatology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.031700000166893005,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/health-informatics","display_name":"Health informatics","score":0.5775942802429199},{"id":"https://openalex.org/keywords/epitope","display_name":"Epitope","score":0.5302714109420776},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.5138709545135498},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4119889736175537},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3789285123348236},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.3581445515155792},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.33801865577697754},{"id":"https://openalex.org/keywords/public-health","display_name":"Public health","score":0.22285914421081543},{"id":"https://openalex.org/keywords/antibody","display_name":"Antibody","score":0.1285068392753601},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.11411923170089722},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.11065438389778137}],"concepts":[{"id":"https://openalex.org/C145642194","wikidata":"https://www.wikidata.org/wiki/Q870895","display_name":"Health informatics","level":3,"score":0.5775942802429199},{"id":"https://openalex.org/C195616568","wikidata":"https://www.wikidata.org/wiki/Q128711","display_name":"Epitope","level":3,"score":0.5302714109420776},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.5138709545135498},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4119889736175537},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3789285123348236},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.3581445515155792},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.33801865577697754},{"id":"https://openalex.org/C138816342","wikidata":"https://www.wikidata.org/wiki/Q189603","display_name":"Public health","level":2,"score":0.22285914421081543},{"id":"https://openalex.org/C159654299","wikidata":"https://www.wikidata.org/wiki/Q79460","display_name":"Antibody","level":2,"score":0.1285068392753601},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.11411923170089722},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.11065438389778137}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008180","descriptor_name":"Lupus Erythematosus, Systemic","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D008180","descriptor_name":"Lupus Erythematosus, Systemic","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D008180","descriptor_name":"Lupus Erythematosus, Systemic","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D008180","descriptor_name":"Lupus Erythematosus, Systemic","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12911-025-03056-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-025-03056-x","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/counter/pdf/10.1186/s12911-025-03056-x","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},{"id":"pmid:40598008","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40598008","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC medical informatics and decision making","raw_type":null},{"id":"pmh:oai:doaj.org/article:1d8808e58dd84667aba8c33ecec9fdfd","is_oa":true,"landing_page_url":"https://doaj.org/article/1d8808e58dd84667aba8c33ecec9fdfd","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Medical Informatics and Decision Making, Vol 25, Iss 1, Pp 1-15 (2025)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:12220259","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12220259","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Med Inform Decis Mak","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12911-025-03056-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-025-03056-x","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/counter/pdf/10.1186/s12911-025-03056-x","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4411846840.pdf","grobid_xml":"https://content.openalex.org/works/W4411846840.grobid-xml"},"referenced_works_count":47,"referenced_works":["https://openalex.org/W1500435738","https://openalex.org/W1617051480","https://openalex.org/W1678356000","https://openalex.org/W1881268909","https://openalex.org/W2001963060","https://openalex.org/W2007493927","https://openalex.org/W2061272125","https://openalex.org/W2064675550","https://openalex.org/W2067954011","https://openalex.org/W2098592624","https://openalex.org/W2111841685","https://openalex.org/W2148759288","https://openalex.org/W2163822663","https://openalex.org/W2228305902","https://openalex.org/W2295598076","https://openalex.org/W2437319553","https://openalex.org/W2463543731","https://openalex.org/W2610815709","https://openalex.org/W2754560758","https://openalex.org/W2759850952","https://openalex.org/W2765132169","https://openalex.org/W2789654361","https://openalex.org/W2793454642","https://openalex.org/W2794288507","https://openalex.org/W2911964244","https://openalex.org/W2914118310","https://openalex.org/W3036545402","https://openalex.org/W3086901785","https://openalex.org/W3135715827","https://openalex.org/W3151130473","https://openalex.org/W3159523993","https://openalex.org/W3177226227","https://openalex.org/W3185332146","https://openalex.org/W3194282770","https://openalex.org/W4205773061","https://openalex.org/W4212981309","https://openalex.org/W4240578325","https://openalex.org/W4244190327","https://openalex.org/W4244895750","https://openalex.org/W4253900403","https://openalex.org/W4297243351","https://openalex.org/W4378781450","https://openalex.org/W4396894706","https://openalex.org/W4401334464","https://openalex.org/W4402363339","https://openalex.org/W4403784259","https://openalex.org/W6630229306"],"related_works":["https://openalex.org/W2021824670","https://openalex.org/W2009867644","https://openalex.org/W2363997565","https://openalex.org/W1981120125","https://openalex.org/W3036615648","https://openalex.org/W2408448169","https://openalex.org/W2182598264","https://openalex.org/W2075879923","https://openalex.org/W1978626146","https://openalex.org/W2205639271"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,95,188,300],"accurate":[2],"prediction":[3,217,260],"of":[4,20,43,91,200,206,211,242],"epitopes":[5],"associated":[6],"with":[7,52,82,282],"Systemic":[8],"Lupus":[9],"Erythematosus":[10],"(SLE)":[11],"plays":[12],"a":[13,49,71,119,133,146,161,204],"vital":[14],"role":[15],"in":[16,24,65,142,307],"advancing":[17],"our":[18],"understanding":[19],"autoimmune":[21,310],"pathogenesis":[22],"and":[23,39,60,107,159,177,197,208,253,309],"designing":[25],"effective":[26],"immunotherapeutics.":[27],"Traditional":[28],"bioinformatics":[29],"methods":[30],"often":[31],"struggle":[32],"to":[33,55,87,255],"capture":[34],"the":[35,89,178,181,214,224,228,235,250,287],"intricate":[36],"sequence":[37,85,116,143],"patterns":[38,128],"high-dimensional":[40],"signals":[41],"characteristic":[42,184],"epitope":[44,216,259],"data.":[45],"Deep":[46],"learning":[47,59,74,139,195,271,285],"presents":[48,265],"compelling":[50],"alternative,":[51],"its":[53],"ability":[54],"perform":[56],"automatic":[57],"feature":[58,103],"model":[61,190,288],"complex":[62,258],"dependencies":[63,141],"inherent":[64],"biological":[66,298],"sequences.":[67],"This":[68,263],"study":[69],"proposes":[70],"hybrid":[72,189],"deep":[73,84,270,284],"architecture":[75],"that":[76,125,152,223],"synergistically":[77],"integrates":[78,153],"handcrafted":[79,102,130,280],"biochemical":[80,106],"features":[81,243,281],"data-driven":[83],"modeling":[86],"improve":[88],"identification":[90],"SLE-associated":[92,275],"epitopes.":[93,276],"METHODS:":[94],"framework":[96,301],"comprises":[97],"six":[98],"interconnected":[99],"components:":[100],"(1)":[101],"extraction":[104],"encoding":[105],"physicochemical":[108],"attributes;":[109],"(2)":[110],"an":[111,209,266],"embedding":[112],"layer":[113],"for":[114,138,164,273,304],"dense":[115],"representation;":[117],"(3)":[118],"Convolutional":[120],"Neural":[121],"Network":[122],"(CNN)":[123],"branch":[124,137],"captures":[126],"local":[127],"from":[129,156],"features;":[131],"(4)":[132],"Long":[134],"Short-Term":[135],"Memory":[136],"temporal":[140],"data;":[144],"(5)":[145],"scaled":[147],"dot-product":[148],"attention-based":[149],"fusion":[150,237],"module":[151],"complementary":[154],"information":[155],"both":[157,192],"branches;":[158],"(6)":[160],"Multi-Layer":[162],"Perceptron":[163],"final":[165],"classification.":[166],"Model":[167],"evaluation":[168],"employed":[169],"metrics":[170],"such":[171],"as":[172],"Accuracy,":[173],"Precision,":[174],"Recall,":[175],"F1-score,":[176],"area":[179],"under":[180],"receiver":[182],"operating":[183],"curve":[185],"(ROCAUC).":[186],"RESULTS:":[187],"outperformed":[191],"baseline":[193],"machine":[194],"algorithms":[196],"ablated":[198],"versions":[199],"itself.":[201],"It":[202],"achieved":[203],"ROCAUC":[205],"0.9506":[207],"F1-score":[210],"0.8333":[212],"on":[213,232],"SLE":[215],"task.":[218],"Notably,":[219],"ablation":[220],"studies":[221],"revealed":[222],"CNN":[225],"component":[226],"had":[227],"most":[229],"substantial":[230],"influence":[231],"performance,":[233],"while":[234],"custom":[236],"mechanism":[238],"yielded":[239],"better":[240],"integration":[241],"than":[244],"conventional":[245],"strategies.":[246],"These":[247],"findings":[248],"underscore":[249],"model's":[251],"robustness":[252],"capacity":[254],"generalize":[256],"across":[257],"tasks.":[261],"CONCLUSION:":[262],"work":[264],"interpretable,":[267],"biologically":[268],"informed":[269],"approach":[272],"predicting":[274],"By":[277],"merging":[278],"domain-specific":[279],"dynamic":[283],"representations,":[286],"not":[289],"only":[290],"enhances":[291],"predictive":[292],"accuracy":[293],"but":[294],"also":[295],"provides":[296],"meaningful":[297],"insights.":[299],"holds":[302],"promise":[303],"broader":[305],"applications":[306],"immunoinformatics":[308],"disease":[311],"research.":[312]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":2}],"updated_date":"2026-07-29T09:40:50.615796","created_date":"2025-10-10T00:00:00"}
