{"id":"https://openalex.org/W4409566580","doi":"https://doi.org/10.1186/s12911-025-02998-6","title":"Hierarchical embedding attention for overall survival prediction in lung cancer from unstructured EHRs","display_name":"Hierarchical embedding attention for overall survival prediction in lung cancer from unstructured EHRs","publication_year":2025,"publication_date":"2025-04-18","ids":{"openalex":"https://openalex.org/W4409566580","doi":"https://doi.org/10.1186/s12911-025-02998-6","pmid":"https://pubmed.ncbi.nlm.nih.gov/40251623"},"language":"en","primary_location":{"id":"doi:10.1186/s12911-025-02998-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-025-02998-6","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/counter/pdf/10.1186/s12911-025-02998-6","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcmedinformdecismak.biomedcentral.com/counter/pdf/10.1186/s12911-025-02998-6","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5093735677","display_name":"Domenico Paolo","orcid":null},"institutions":[{"id":"https://openalex.org/I155125353","display_name":"Universit\u00e0 Campus Bio-Medico","ror":"https://ror.org/04gqx4x78","country_code":"IT","type":"education","lineage":["https://openalex.org/I155125353"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Domenico Paolo","raw_affiliation_strings":["Unit of Computer Systems & Bioinformatics, Department of Engineering, University Campus Bio-Medico di Roma, Roma, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Unit of Computer Systems & Bioinformatics, Department of Engineering, University Campus Bio-Medico di Roma, Roma, Italy","institution_ids":["https://openalex.org/I155125353"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005999785","display_name":"Carlo Greco","orcid":"https://orcid.org/0000-0002-1068-5045"},"institutions":[{"id":"https://openalex.org/I155125353","display_name":"Universit\u00e0 Campus Bio-Medico","ror":"https://ror.org/04gqx4x78","country_code":"IT","type":"education","lineage":["https://openalex.org/I155125353"]},{"id":"https://openalex.org/I4210143387","display_name":"Campus Bio Medico University Hospital","ror":"https://ror.org/04gqbd180","country_code":"IT","type":"healthcare","lineage":["https://openalex.org/I4210143387"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Carlo Greco","raw_affiliation_strings":["Operative Research Unit of Radiation Oncology, Fondazione Policlinico Universitario Campus Bio-Medico, Roma, Italy","Research Unit of Radiation Oncology, Department of Medicine and Surgery, University Campus Bio-Medico di Roma, Roma, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Operative Research Unit of Radiation Oncology, Fondazione Policlinico Universitario Campus Bio-Medico, Roma, Italy","institution_ids":["https://openalex.org/I4210143387"]},{"raw_affiliation_string":"Research Unit of Radiation Oncology, Department of Medicine and Surgery, University Campus Bio-Medico di Roma, Roma, Italy","institution_ids":["https://openalex.org/I155125353"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060954139","display_name":"Alessio Cortellini","orcid":"https://orcid.org/0000-0002-1209-5735"},"institutions":[{"id":"https://openalex.org/I4210143387","display_name":"Campus Bio Medico University Hospital","ror":"https://ror.org/04gqbd180","country_code":"IT","type":"healthcare","lineage":["https://openalex.org/I4210143387"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Alessio Cortellini","raw_affiliation_strings":["Operative Research Unit of Medical Oncology, Fondazione Policlinico Universitario Campus Bio-Medico, Roma, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Operative Research Unit of Medical Oncology, Fondazione Policlinico Universitario Campus Bio-Medico, Roma, Italy","institution_ids":["https://openalex.org/I4210143387"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039880019","display_name":"Sara Ramella","orcid":"https://orcid.org/0000-0002-5782-7717"},"institutions":[{"id":"https://openalex.org/I155125353","display_name":"Universit\u00e0 Campus Bio-Medico","ror":"https://ror.org/04gqx4x78","country_code":"IT","type":"education","lineage":["https://openalex.org/I155125353"]},{"id":"https://openalex.org/I4210143387","display_name":"Campus Bio Medico University Hospital","ror":"https://ror.org/04gqbd180","country_code":"IT","type":"healthcare","lineage":["https://openalex.org/I4210143387"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Sara Ramella","raw_affiliation_strings":["Operative Research Unit of Radiation Oncology, Fondazione Policlinico Universitario Campus Bio-Medico, Roma, Italy","Research Unit of Radiation Oncology, Department of Medicine and Surgery, University Campus Bio-Medico di Roma, Roma, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Operative Research Unit of Radiation Oncology, Fondazione Policlinico Universitario Campus Bio-Medico, Roma, Italy","institution_ids":["https://openalex.org/I4210143387"]},{"raw_affiliation_string":"Research Unit of Radiation Oncology, Department of Medicine and Surgery, University Campus Bio-Medico di Roma, Roma, Italy","institution_ids":["https://openalex.org/I155125353"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003216983","display_name":"Paolo Soda","orcid":"https://orcid.org/0000-0003-2621-072X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Paolo Soda","raw_affiliation_strings":["Department of Diagnostics and Intervention, Radiation Physics, Ume\u00e5 University, Ume\u00e5, Sweden. paolo.soda@umu.se","Unit of Computer Systems & Bioinformatics, Department of Engineering, University Campus Bio-Medico di Roma, Roma, Italy. paolo.soda@umu.se"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Diagnostics and Intervention, Radiation Physics, Ume\u00e5 University, Ume\u00e5, Sweden. paolo.soda@umu.se","institution_ids":[]},{"raw_affiliation_string":"Unit of Computer Systems & Bioinformatics, Department of Engineering, University Campus Bio-Medico di Roma, Roma, Italy. paolo.soda@umu.se","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043790595","display_name":"Alessandro Bria","orcid":"https://orcid.org/0000-0002-2895-6544"},"institutions":[{"id":"https://openalex.org/I186995768","display_name":"Universit\u00e0 degli studi di Cassino e del Lazio Meridionale","ror":"https://ror.org/04nxkaq16","country_code":"IT","type":"education","lineage":["https://openalex.org/I186995768"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Alessandro Bria","raw_affiliation_strings":["Department of Electrical and Information Engineering, University of Cassino and Southern Latium, Cassino, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical and Information Engineering, University of Cassino and Southern Latium, Cassino, Italy","institution_ids":["https://openalex.org/I186995768"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5023365911","display_name":"Rosa Sicilia","orcid":"https://orcid.org/0000-0002-2513-0827"},"institutions":[{"id":"https://openalex.org/I155125353","display_name":"Universit\u00e0 Campus Bio-Medico","ror":"https://ror.org/04gqx4x78","country_code":"IT","type":"education","lineage":["https://openalex.org/I155125353"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Rosa Sicilia","raw_affiliation_strings":["Unit of Computer Systems & Bioinformatics, Department of Engineering, University Campus Bio-Medico di Roma, Roma, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Unit of Computer Systems & Bioinformatics, Department of Engineering, University Campus Bio-Medico di Roma, Roma, Italy","institution_ids":["https://openalex.org/I155125353"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5093735677"],"corresponding_institution_ids":["https://openalex.org/I155125353"],"apc_list":{"value":1570,"currency":"GBP","value_usd":1925},"apc_paid":{"value":1570,"currency":"GBP","value_usd":1925},"fwci":8.3104,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.97003019,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":99},"biblio":{"volume":"25","issue":"1","first_page":"169","last_page":"169"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9890999794006348,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interpretability","display_name":"Interpretability","score":0.8105617761611938},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7409631609916687},{"id":"https://openalex.org/keywords/unstructured-data","display_name":"Unstructured data","score":0.6455503702163696},{"id":"https://openalex.org/keywords/named-entity-recognition","display_name":"Named-entity recognition","score":0.6303478479385376},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6093566417694092},{"id":"https://openalex.org/keywords/health-records","display_name":"Health records","score":0.554712176322937},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.5447916984558105},{"id":"https://openalex.org/keywords/word-embedding","display_name":"Word embedding","score":0.5419162511825562},{"id":"https://openalex.org/keywords/health-informatics","display_name":"Health informatics","score":0.5411189794540405},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.48771652579307556},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4412859380245209},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.37351691722869873},{"id":"https://openalex.org/keywords/big-data","display_name":"Big data","score":0.2950751781463623},{"id":"https://openalex.org/keywords/embedding","display_name":"Embedding","score":0.28022706508636475},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.16295811533927917},{"id":"https://openalex.org/keywords/health-care","display_name":"Health care","score":0.11093083024024963}],"concepts":[{"id":"https://openalex.org/C2781067378","wikidata":"https://www.wikidata.org/wiki/Q17027399","display_name":"Interpretability","level":2,"score":0.8105617761611938},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7409631609916687},{"id":"https://openalex.org/C2781252014","wikidata":"https://www.wikidata.org/wiki/Q1141900","display_name":"Unstructured data","level":3,"score":0.6455503702163696},{"id":"https://openalex.org/C2779135771","wikidata":"https://www.wikidata.org/wiki/Q403574","display_name":"Named-entity recognition","level":3,"score":0.6303478479385376},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6093566417694092},{"id":"https://openalex.org/C3019952477","wikidata":"https://www.wikidata.org/wiki/Q1324077","display_name":"Health records","level":3,"score":0.554712176322937},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.5447916984558105},{"id":"https://openalex.org/C2777462759","wikidata":"https://www.wikidata.org/wiki/Q18395344","display_name":"Word embedding","level":3,"score":0.5419162511825562},{"id":"https://openalex.org/C145642194","wikidata":"https://www.wikidata.org/wiki/Q870895","display_name":"Health informatics","level":3,"score":0.5411189794540405},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.48771652579307556},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4412859380245209},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.37351691722869873},{"id":"https://openalex.org/C75684735","wikidata":"https://www.wikidata.org/wiki/Q858810","display_name":"Big data","level":2,"score":0.2950751781463623},{"id":"https://openalex.org/C41608201","wikidata":"https://www.wikidata.org/wiki/Q980509","display_name":"Embedding","level":2,"score":0.28022706508636475},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.16295811533927917},{"id":"https://openalex.org/C160735492","wikidata":"https://www.wikidata.org/wiki/Q31207","display_name":"Health care","level":2,"score":0.11093083024024963},{"id":"https://openalex.org/C50522688","wikidata":"https://www.wikidata.org/wiki/Q189833","display_name":"Economic growth","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C138816342","wikidata":"https://www.wikidata.org/wiki/Q189603","display_name":"Public health","level":2,"score":0.0},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D002289","descriptor_name":"Carcinoma, Non-Small-Cell Lung","qualifier_ui":"Q000401","qualifier_name":"mortality","is_major_topic":true},{"descriptor_ui":"D002289","descriptor_name":"Carcinoma, Non-Small-Cell Lung","qualifier_ui":"Q000401","qualifier_name":"mortality","is_major_topic":true},{"descriptor_ui":"D002289","descriptor_name":"Carcinoma, Non-Small-Cell Lung","qualifier_ui":"Q000401","qualifier_name":"mortality","is_major_topic":true},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000401","qualifier_name":"mortality","is_major_topic":true},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000401","qualifier_name":"mortality","is_major_topic":true},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000401","qualifier_name":"mortality","is_major_topic":true},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016019","descriptor_name":"Survival Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016019","descriptor_name":"Survival Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016019","descriptor_name":"Survival Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1186/s12911-025-02998-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-025-02998-6","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/counter/pdf/10.1186/s12911-025-02998-6","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},{"id":"pmid:40251623","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40251623","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC medical informatics and decision making","raw_type":null},{"id":"pmh:oai:DiVA.org:umu-238588","is_oa":true,"landing_page_url":"http://urn.kb.se/resolve?urn=urn:nbn:se:umu:diva-238588","pdf_url":null,"source":{"id":"https://openalex.org/S4306400361","display_name":"DiVA at Ume\u00e5 University (Ume\u00e5 University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I90267481","host_organization_name":"Ume\u00e5 University","host_organization_lineage":["https://openalex.org/I90267481"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:doaj.org/article:4a7dee9e3e874196b1e1ea2fa2753682","is_oa":true,"landing_page_url":"https://doaj.org/article/4a7dee9e3e874196b1e1ea2fa2753682","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Medical Informatics and Decision Making, Vol 25, Iss 1, Pp 1-16 (2025)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:12007135","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12007135","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Med Inform Decis Mak","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12911-025-02998-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-025-02998-6","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/counter/pdf/10.1186/s12911-025-02998-6","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1364868472","display_name":null,"funder_award_id":"2018-05973","funder_id":"https://openalex.org/F4320322581","funder_display_name":"Vetenskapsr\u00e5det"},{"id":"https://openalex.org/G3321450376","display_name":null,"funder_award_id":"05973","funder_id":"https://openalex.org/F4320322581","funder_display_name":"Vetenskapsr\u00e5det"},{"id":"https://openalex.org/G5930544366","display_name":null,"funder_award_id":"PE0000013-FAIR","funder_id":"https://openalex.org/F4320322144","funder_display_name":"Universit\u00e0 Campus Bio-Medico di Roma"},{"id":"https://openalex.org/G712881263","display_name":null,"funder_award_id":"2018-","funder_id":"https://openalex.org/F4320322581","funder_display_name":"Vetenskapsr\u00e5det"},{"id":"https://openalex.org/G8869864247","display_name":null,"funder_award_id":"2022-06725","funder_id":"https://openalex.org/F4320322581","funder_display_name":"Vetenskapsr\u00e5det"}],"funders":[{"id":"https://openalex.org/F4320322144","display_name":"Universit\u00e0 Campus Bio-Medico di Roma","ror":"https://ror.org/04gqx4x78"},{"id":"https://openalex.org/F4320322581","display_name":"Vetenskapsr\u00e5det","ror":"https://ror.org/03zttf063"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4409566580.pdf","grobid_xml":"https://content.openalex.org/works/W4409566580.grobid-xml"},"referenced_works_count":42,"referenced_works":["https://openalex.org/W79139011","https://openalex.org/W1034374084","https://openalex.org/W2044702943","https://openalex.org/W2064675550","https://openalex.org/W2084139018","https://openalex.org/W2114668172","https://openalex.org/W2137407193","https://openalex.org/W2147880316","https://openalex.org/W2168041406","https://openalex.org/W2236169403","https://openalex.org/W2396881363","https://openalex.org/W2753919178","https://openalex.org/W2789172526","https://openalex.org/W2792317186","https://openalex.org/W2900803580","https://openalex.org/W2963351448","https://openalex.org/W2979250794","https://openalex.org/W3086199683","https://openalex.org/W3131698376","https://openalex.org/W3146463158","https://openalex.org/W3156308192","https://openalex.org/W4200136492","https://openalex.org/W4205619992","https://openalex.org/W4212881197","https://openalex.org/W4220799018","https://openalex.org/W4220989182","https://openalex.org/W4241176535","https://openalex.org/W4250799270","https://openalex.org/W4251535118","https://openalex.org/W4281560212","https://openalex.org/W4285197708","https://openalex.org/W4285249657","https://openalex.org/W4286250847","https://openalex.org/W4288043296","https://openalex.org/W4308772430","https://openalex.org/W4379379356","https://openalex.org/W4382404920","https://openalex.org/W4384382793","https://openalex.org/W4385407690","https://openalex.org/W4385573931","https://openalex.org/W4390970475","https://openalex.org/W4400112244"],"related_works":["https://openalex.org/W2905433371","https://openalex.org/W2888392564","https://openalex.org/W4310278675","https://openalex.org/W4388422664","https://openalex.org/W4390569940","https://openalex.org/W4361193272","https://openalex.org/W4297688969","https://openalex.org/W4281718931","https://openalex.org/W4392056731","https://openalex.org/W2252153875"],"abstract_inverted_index":{"The":[0],"automated":[1],"processing":[2],"of":[3,71,166,214,236],"Electronic":[4],"Health":[5],"Records":[6],"(EHRs)":[7],"poses":[8],"a":[9,89,99,112,230],"significant":[10,241],"challenge":[11],"due":[12],"to":[13,162,226],"their":[14,60,76],"unstructured":[15,130],"nature,":[16],"rich":[17],"in":[18,35,123,155,193],"valuable,":[19],"yet":[20],"disorganized":[21],"information.":[22,81],"Natural":[23],"Language":[24],"Processing":[25],"(NLP),":[26],"particularly":[27],"Named":[28],"Entity":[29],"Recognition":[30],"(NER),":[31],"has":[32],"been":[33],"instrumental":[34],"extracting":[36,48,167],"structured":[37],"information":[38,177,192,228],"from":[39,134,142],"EHR":[40],"data.":[41],"However,":[42],"existing":[43],"literature":[44],"primarly":[45],"focuses":[46],"on":[47,93,152,217],"handcrafted":[49],"clinical":[50,113,137,247],"features":[51],"through":[52,229],"NLP":[53],"and":[54,79,103,168],"NER":[55,91],"methods":[56],"without":[57],"delving":[58],"into":[59],"learned":[61],"representations.":[62],"In":[63],"this":[64,117,208],"work,":[65],"we":[66],"explore":[67],"the":[68,105,164,186,191,196,199,203,212,218,222,234],"untapped":[69],"potential":[70],"these":[72],"representations":[73,86,173],"by":[74,88,210,221],"considering":[75],"contextual":[77],"richness":[78],"entity-specific":[80],"Our":[82,181],"proposed":[83],"methodology":[84,182],"extracts":[85],"generated":[87],"transformer-based":[90],"model":[92,197],"EHRs":[94,131,153,194,227],"data,":[95],"combines":[96],"them":[97],"using":[98,129],"hierarchical":[100,187,223],"attention":[101,188,224],"mechanism,":[102],"employs":[104],"obtained":[106],"enriched":[107],"representation":[108],"as":[109,159,178],"input":[110],"for":[111],"prediction":[114],"model.":[115],"Specifically,":[116],"study":[118,149],"addresses":[119],"Overall":[120],"Survival":[121],"(OS)":[122],"Non-Small":[124],"Cell":[125],"Lung":[126],"Cancer":[127],"(NSCLC)":[128],"data":[132],"collected":[133],"an":[135],"Italian":[136],"centre":[138],"encompassing":[139],"838":[140],"records":[141],"231":[143],"lung":[144],"cancer":[145],"patients.":[146],"Whilst":[147],"our":[148,237],"is":[150,183],"applied":[151],"written":[154],"Italian,":[156],"it":[157],"serves":[158],"use":[160],"case":[161],"prove":[163],"effectiveness":[165,235],"employing":[169],"high":[170],"level":[171],"textual":[172],"that":[174,195],"capture":[175],"relevant":[176],"named":[179],"entities.":[180],"interpretable":[184],"because":[185],"mechanism":[189,225],"highlights":[190],"considers":[198],"most":[200],"crucial":[201],"during":[202],"decision-making":[204],"process.":[205],"We":[206],"validated":[207],"interpretability":[209],"measuring":[211],"agreement":[213],"domain":[215],"experts":[216],"importance":[219],"assigned":[220],"questionnaire.":[231],"Results":[232],"demonstrate":[233],"method,":[238],"showcasing":[239],"statistically":[240],"improvements":[242],"over":[243],"traditional":[244],"manually":[245],"extracted":[246],"features.":[248]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":2}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
