{"id":"https://openalex.org/W4408585100","doi":"https://doi.org/10.1186/s12911-025-02893-0","title":"A study on large-scale disease causality discovery from biomedical literature","display_name":"A study on large-scale disease causality discovery from biomedical literature","publication_year":2025,"publication_date":"2025-03-18","ids":{"openalex":"https://openalex.org/W4408585100","doi":"https://doi.org/10.1186/s12911-025-02893-0","pmid":"https://pubmed.ncbi.nlm.nih.gov/40102814"},"language":"en","primary_location":{"id":"doi:10.1186/s12911-025-02893-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-025-02893-0","pdf_url":"https://link.springer.com/content/pdf/10.1186/s12911-025-02893-0.pdf","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://link.springer.com/content/pdf/10.1186/s12911-025-02893-0.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5109877527","display_name":"Shirui Yu","orcid":"https://orcid.org/0009-0008-7914-9647"},"institutions":[{"id":"https://openalex.org/I4210148850","display_name":"National Science Library","ror":"https://ror.org/04ndjyr10","country_code":"CN","type":"archive","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210148850"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Shirui Yu","raw_affiliation_strings":["Department of Information Resources Management, School of Economics and Management, University of Chinese Academy of Sciences, Beijing, 100190, China","National Science Library (Chengdu), Chinese Academy of Sciences, Chengdu, 610041, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Information Resources Management, School of Economics and Management, University of Chinese Academy of Sciences, Beijing, 100190, China","institution_ids":["https://openalex.org/I4210165038"]},{"raw_affiliation_string":"National Science Library (Chengdu), Chinese Academy of Sciences, Chengdu, 610041, China","institution_ids":["https://openalex.org/I4210148850"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101442188","display_name":"Peng Dong","orcid":null},"institutions":[{"id":"https://openalex.org/I200296433","display_name":"Chinese Academy of Medical Sciences & Peking Union Medical College","ror":"https://ror.org/02drdmm93","country_code":"CN","type":"education","lineage":["https://openalex.org/I200296433"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Peng Dong","raw_affiliation_strings":["Institute of Medical Information, Chinese Academy of Medical Sciences, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Medical Information, Chinese Academy of Medical Sciences, Beijing, China","institution_ids":["https://openalex.org/I200296433"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019856455","display_name":"Junlian Li","orcid":"https://orcid.org/0000-0002-5681-1203"},"institutions":[{"id":"https://openalex.org/I200296433","display_name":"Chinese Academy of Medical Sciences & Peking Union Medical College","ror":"https://ror.org/02drdmm93","country_code":"CN","type":"education","lineage":["https://openalex.org/I200296433"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Junlian Li","raw_affiliation_strings":["Institute of Medical Information, Chinese Academy of Medical Sciences, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Medical Information, Chinese Academy of Medical Sciences, Beijing, China","institution_ids":["https://openalex.org/I200296433"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103109948","display_name":"Xiaoli Tang","orcid":"https://orcid.org/0000-0001-6946-3482"},"institutions":[{"id":"https://openalex.org/I200296433","display_name":"Chinese Academy of Medical Sciences & Peking Union Medical College","ror":"https://ror.org/02drdmm93","country_code":"CN","type":"education","lineage":["https://openalex.org/I200296433"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaoli Tang","raw_affiliation_strings":["Institute of Medical Information, Chinese Academy of Medical Sciences, Beijing, China. tang.xiaoli@imicams.ac.cn"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Medical Information, Chinese Academy of Medical Sciences, Beijing, China. tang.xiaoli@imicams.ac.cn","institution_ids":["https://openalex.org/I200296433"]}]},{"author_position":"last","author":{"id":null,"display_name":"Xiaoying Li","orcid":null},"institutions":[{"id":"https://openalex.org/I200296433","display_name":"Chinese Academy of Medical Sciences & Peking Union Medical College","ror":"https://ror.org/02drdmm93","country_code":"CN","type":"education","lineage":["https://openalex.org/I200296433"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaoying Li","raw_affiliation_strings":["Institute of Medical Information, Chinese Academy of Medical Sciences, Beijing, China. lixiaoying@imicams.ac.cn"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Medical Information, Chinese Academy of Medical Sciences, Beijing, China. lixiaoying@imicams.ac.cn","institution_ids":["https://openalex.org/I200296433"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5109877527"],"corresponding_institution_ids":["https://openalex.org/I4210148850","https://openalex.org/I4210165038"],"apc_list":{"value":1570,"currency":"GBP","value_usd":1925},"apc_paid":{"value":1570,"currency":"GBP","value_usd":1925},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.04122554,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"25","issue":"1","first_page":"136","last_page":"136"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9108999967575073,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9108999967575073,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.019700000062584877,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.01590000092983246,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/health-informatics","display_name":"Health informatics","score":0.7394497990608215},{"id":"https://openalex.org/keywords/causality","display_name":"Causality (physics)","score":0.6260143518447876},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.6088296175003052},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.5338548421859741},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4990363121032715},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.4331137537956238},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.3080422282218933},{"id":"https://openalex.org/keywords/public-health","display_name":"Public health","score":0.1523837149143219},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.12719008326530457},{"id":"https://openalex.org/keywords/cartography","display_name":"Cartography","score":0.11052718758583069},{"id":"https://openalex.org/keywords/nursing","display_name":"Nursing","score":0.1071053147315979},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.09787502884864807}],"concepts":[{"id":"https://openalex.org/C145642194","wikidata":"https://www.wikidata.org/wiki/Q870895","display_name":"Health informatics","level":3,"score":0.7394497990608215},{"id":"https://openalex.org/C64357122","wikidata":"https://www.wikidata.org/wiki/Q1149766","display_name":"Causality (physics)","level":2,"score":0.6260143518447876},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.6088296175003052},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.5338548421859741},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4990363121032715},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.4331137537956238},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.3080422282218933},{"id":"https://openalex.org/C138816342","wikidata":"https://www.wikidata.org/wiki/Q189603","display_name":"Public health","level":2,"score":0.1523837149143219},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.12719008326530457},{"id":"https://openalex.org/C58640448","wikidata":"https://www.wikidata.org/wiki/Q42515","display_name":"Cartography","level":1,"score":0.11052718758583069},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.1071053147315979},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.09787502884864807},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":"Q000209","qualifier_name":"etiology","is_major_topic":false},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":"Q000209","qualifier_name":"etiology","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015984","descriptor_name":"Causality","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015984","descriptor_name":"Causality","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015984","descriptor_name":"Causality","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015984","descriptor_name":"Causality","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D063369","descriptor_name":"Knowledge Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063369","descriptor_name":"Knowledge Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063369","descriptor_name":"Knowledge Discovery","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D063369","descriptor_name":"Knowledge Discovery","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12911-025-02893-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-025-02893-0","pdf_url":"https://link.springer.com/content/pdf/10.1186/s12911-025-02893-0.pdf","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},{"id":"pmid:40102814","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40102814","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC medical informatics and decision making","raw_type":null},{"id":"pmh:oai:doaj.org/article:d029732fa1a4493ea751fee17863f576","is_oa":true,"landing_page_url":"https://doaj.org/article/d029732fa1a4493ea751fee17863f576","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Medical Informatics and Decision Making, Vol 25, Iss 1, Pp 1-15 (2025)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:11916938","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11916938","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Med Inform Decis Mak","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12911-025-02893-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-025-02893-0","pdf_url":"https://link.springer.com/content/pdf/10.1186/s12911-025-02893-0.pdf","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G7362536181","display_name":null,"funder_award_id":"2021-I2M-1-033","funder_id":"https://openalex.org/F4320323137","funder_display_name":"Chinese Academy of Medical Sciences"}],"funders":[{"id":"https://openalex.org/F4320323137","display_name":"Chinese Academy of Medical Sciences","ror":"https://ror.org/03cve4549"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4408585100.pdf","grobid_xml":"https://content.openalex.org/works/W4408585100.grobid-xml"},"referenced_works_count":21,"referenced_works":["https://openalex.org/W1194922867","https://openalex.org/W1492286502","https://openalex.org/W1976291885","https://openalex.org/W2002005654","https://openalex.org/W2041073071","https://openalex.org/W2117446654","https://openalex.org/W2166474856","https://openalex.org/W2516467211","https://openalex.org/W2616363959","https://openalex.org/W2953703974","https://openalex.org/W2967166693","https://openalex.org/W2991168777","https://openalex.org/W3013387441","https://openalex.org/W3026298482","https://openalex.org/W3028004046","https://openalex.org/W3107429651","https://openalex.org/W3202959309","https://openalex.org/W4211019091","https://openalex.org/W4323967649","https://openalex.org/W4365479727","https://openalex.org/W4393936594"],"related_works":["https://openalex.org/W2081494945","https://openalex.org/W2389053294","https://openalex.org/W1970893504","https://openalex.org/W4312071518","https://openalex.org/W2901208600","https://openalex.org/W1677090476","https://openalex.org/W830525666","https://openalex.org/W2330229995","https://openalex.org/W3014724311","https://openalex.org/W167306138"],"abstract_inverted_index":{"BACKGROUND:":[0],"Biomedical":[1],"semantic":[2,12,67,122,156,182,208,264,278],"relationship":[3,68],"extraction":[4,69,115,134,353,373,381,404],"could":[5],"reveal":[6],"important":[7],"biomedical":[8,22,72,140,204,376],"entities":[9],"and":[10,28,54,59,168,187,254,310,331,361,388],"the":[11,21,34,47,71,132,146,169,189,203,228,281,346,350,396,410],"relationships":[13,36],"between":[14,37],"them,":[15,301],"providing":[16],"a":[17,40,121,153,179,261,358,379],"crucial":[18],"foundation":[19],"for":[20,66,80,86,97,216,287,296,385,402],"knowledge":[23,138,219,224,298],"discovery,":[24],"clinical":[25],"decision":[26],"making":[27],"other":[29,323],"artificial":[30],"intelligence":[31],"applications.":[32],"Identifying":[33],"causal":[35],"diseases":[38],"is":[39,62,76,344],"significant":[41],"research":[42,343],"field,":[43,73],"since":[44],"it":[45,75],"expedites":[46],"identification":[48],"of":[49,116,135,155,248,274,325,341,354,382,405],"underlying":[50],"disease":[51,57,81,104,113,128,136,160,170,180,199,230,237,240,249,252,256,262,288,293,307,316,326,329,333,351,363,371,383,406],"pathogenesis":[52],"mechanisms":[53],"promote":[55],"better":[56],"prevention":[58],"treatment.":[60],"SemRep":[61,98,117,355],"an":[63,94,211,272,369],"effective":[64],"tool":[65,118],"in":[70,103],"but":[74],"not":[77],"accurate":[78,360],"enough":[79],"causality":[82,105,114,129,137,161,165,171,181,200,231,253,263,289,294,308,317,330,352,364,372,384,398,407],"extraction,":[83,290],"bringing":[84],"challenges":[85],"downstream":[87],"tasks.":[88],"In":[89],"this":[90,342],"study,":[91],"we":[92,151,177,197,222],"proposed":[93,143,347],"optimization":[95],"strategy":[96],"to":[99,111,130,409],"enhance":[100],"its":[101,386],"accuracy":[102,212,273,283,387],"extraction.":[106,365],"METHODS:":[107],"This":[108],"study":[109],"aims":[110],"optimize":[112],"by":[119,185,394],"constructing":[120],"predicate":[123,166,183,265,399],"vocabulary":[124,184,266],"that":[125,345],"precisely":[126],"expresses":[127],"support":[131],"automatic":[133,370],"from":[139,174,202,280,374],"literature.":[141,377],"The":[142,339],"method":[144,348],"invloves":[145],"following":[147],"four":[148],"steps:":[149],"Firstly,":[150],"obtained":[152,260],"collection":[154],"feature":[157],"words":[158,191],"expressing":[159],"based":[162,226],"on":[163,227],"current":[164],"studies":[167],"pairs":[172,201,295],"extracted":[173,198,229],"SemMedDB.":[175],"Then,":[176],"constructed":[178],"filtering":[186],"evaluating":[188],"clue":[190],"using":[192,206],"quantitative":[193],"comparisons.":[194],"Following":[195],"that,":[196],"literature":[205],"36":[207,277],"predicates":[209,270,279],"with":[210,271,304,313],"greater":[213],"than":[214],"80%":[215],"more":[217,359],"meaningful":[218],"discovery.":[220,299],"Finally,":[221],"conducted":[223],"discovery":[225],"triples,":[232,309],"which":[233],"primarily":[234],"includes":[235],"unidirectional":[236,306],"causality,":[238,241,327,334],"bidirectional":[239,315],"as":[242,244],"well":[243],"two":[245],"specific":[246],"types":[247,303,312,324],"causality:":[250],"primary":[251,328],"rare":[255,332],"causality.":[257],"RESULTS:":[258],"We":[259],"containing":[267],"50":[268],"textual":[269],"above":[275],"40%.":[276],"60%":[282],"group":[284],"were":[285,319,335],"used":[286],"yielding":[291],"259,434":[292],"subsequent":[297],"Among":[300],"92,557":[302],"176,010":[305],"6084":[311],"83,424":[314],"triples":[318],"found":[320],"eventually.":[321],"Two":[322],"also":[336,367],"discovered.":[337],"CONCLUSIONS:":[338],"novelty":[340],"enhanced":[349],"tool,":[356],"resulting":[357],"comprehensive":[362],"It":[366],"facilitates":[368],"large-scale":[375],"Additionally,":[378],"customized":[380],"comprehensiveness":[389],"can":[390],"be":[391],"made":[392],"possible":[393],"leveraging":[395],"quantified":[397],"vocabulary,":[400],"allowing":[401],"flexible":[403],"according":[408],"actual":[411],"circumstance.":[412]},"counts_by_year":[],"updated_date":"2026-06-05T09:01:59.212387","created_date":"2025-10-10T00:00:00"}
