{"id":"https://openalex.org/W4408553401","doi":"https://doi.org/10.1186/s12911-025-02852-9","title":"A novel method for subgroup discovery in precision medicine based on topological data analysis","display_name":"A novel method for subgroup discovery in precision medicine based on topological data analysis","publication_year":2025,"publication_date":"2025-03-19","ids":{"openalex":"https://openalex.org/W4408553401","doi":"https://doi.org/10.1186/s12911-025-02852-9","pmid":"https://pubmed.ncbi.nlm.nih.gov/40102808"},"language":"en","primary_location":{"id":"doi:10.1186/s12911-025-02852-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-025-02852-9","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/counter/pdf/10.1186/s12911-025-02852-9","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcmedinformdecismak.biomedcentral.com/counter/pdf/10.1186/s12911-025-02852-9","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5050861682","display_name":"Ciara F. Loughrey","orcid":"https://orcid.org/0000-0002-2295-1320"},"institutions":[{"id":"https://openalex.org/I126231945","display_name":"Queen's University Belfast","ror":"https://ror.org/00hswnk62","country_code":"GB","type":"education","lineage":["https://openalex.org/I126231945"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Ciara F. Loughrey","raw_affiliation_strings":["School of Electronics, Electrical Engineering and Computer Science, Queen's University Belfast, Belfast, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Electronics, Electrical Engineering and Computer Science, Queen's University Belfast, Belfast, UK","institution_ids":["https://openalex.org/I126231945"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020195820","display_name":"Sarah Maguire","orcid":"https://orcid.org/0000-0003-0754-9189"},"institutions":[{"id":"https://openalex.org/I126231945","display_name":"Queen's University Belfast","ror":"https://ror.org/00hswnk62","country_code":"GB","type":"education","lineage":["https://openalex.org/I126231945"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Sarah Maguire","raw_affiliation_strings":["Patrick G Johnston Centre for Cancer Research, Queen's University Belfast, Belfast, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Patrick G Johnston Centre for Cancer Research, Queen's University Belfast, Belfast, UK","institution_ids":["https://openalex.org/I126231945"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025846695","display_name":"Pawe\u0142 D\u0142otko","orcid":"https://orcid.org/0000-0001-5352-3102"},"institutions":[{"id":"https://openalex.org/I99542240","display_name":"Polish Academy of Sciences","ror":"https://ror.org/01dr6c206","country_code":"PL","type":"government","lineage":["https://openalex.org/I99542240"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Pawe\u0142 D\u0142otko","raw_affiliation_strings":["Dioscuri Centre in Topological Data Analysis, Mathematical Institute, Polish Academy of Sciences, Warsaw, Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dioscuri Centre in Topological Data Analysis, Mathematical Institute, Polish Academy of Sciences, Warsaw, Poland","institution_ids":["https://openalex.org/I99542240"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017499714","display_name":"Lu Bai","orcid":"https://orcid.org/0000-0003-1242-5412"},"institutions":[{"id":"https://openalex.org/I126231945","display_name":"Queen's University Belfast","ror":"https://ror.org/00hswnk62","country_code":"GB","type":"education","lineage":["https://openalex.org/I126231945"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Lu Bai","raw_affiliation_strings":["School of Electronics, Electrical Engineering and Computer Science, Queen's University Belfast, Belfast, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Electronics, Electrical Engineering and Computer Science, Queen's University Belfast, Belfast, UK","institution_ids":["https://openalex.org/I126231945"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072820400","display_name":"Nick Orr","orcid":"https://orcid.org/0000-0003-2866-942X"},"institutions":[{"id":"https://openalex.org/I126231945","display_name":"Queen's University Belfast","ror":"https://ror.org/00hswnk62","country_code":"GB","type":"education","lineage":["https://openalex.org/I126231945"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Nick Orr","raw_affiliation_strings":["Patrick G Johnston Centre for Cancer Research, Queen's University Belfast, Belfast, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Patrick G Johnston Centre for Cancer Research, Queen's University Belfast, Belfast, UK","institution_ids":["https://openalex.org/I126231945"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5055186478","display_name":"Anna Jurek","orcid":"https://orcid.org/0000-0002-7435-9134"},"institutions":[{"id":"https://openalex.org/I126231945","display_name":"Queen's University Belfast","ror":"https://ror.org/00hswnk62","country_code":"GB","type":"education","lineage":["https://openalex.org/I126231945"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Anna Jurek-Loughrey","raw_affiliation_strings":["School of Electronics, Electrical Engineering and Computer Science, Queen's University Belfast, Belfast, UK. ajurek@qub.ac.uk","School of Electronics, Electrical Engineering and Computer Science, Queen's University Belfast, Belfast, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Electronics, Electrical Engineering and Computer Science, Queen's University Belfast, Belfast, UK. ajurek@qub.ac.uk","institution_ids":["https://openalex.org/I126231945"]},{"raw_affiliation_string":"School of Electronics, Electrical Engineering and Computer Science, Queen's University Belfast, Belfast, UK","institution_ids":["https://openalex.org/I126231945"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5055186478"],"corresponding_institution_ids":["https://openalex.org/I126231945"],"apc_list":{"value":2690,"currency":"USD","value_usd":2690},"apc_paid":{"value":2690,"currency":"USD","value_usd":2690},"fwci":1.4874,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.82611584,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":97},"biblio":{"volume":"25","issue":"1","first_page":"139","last_page":"139"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12536","display_name":"Topological and Geometric Data Analysis","score":0.9441999793052673,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T12536","display_name":"Topological and Geometric Data Analysis","score":0.9441999793052673,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.013799999840557575,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11476","display_name":"Graph theory and applications","score":0.008500000461935997,"subfield":{"id":"https://openalex.org/subfields/2608","display_name":"Geometry and Topology"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.616241455078125},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5346201062202454},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4859689474105835},{"id":"https://openalex.org/keywords/hotspot","display_name":"Hotspot (geology)","score":0.472739577293396},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.42823082208633423},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.22449031472206116}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.616241455078125},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5346201062202454},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4859689474105835},{"id":"https://openalex.org/C146481406","wikidata":"https://www.wikidata.org/wiki/Q105131","display_name":"Hotspot (geology)","level":2,"score":0.472739577293396},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.42823082208633423},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.22449031472206116},{"id":"https://openalex.org/C8058405","wikidata":"https://www.wikidata.org/wiki/Q46255","display_name":"Geophysics","level":1,"score":0.0},{"id":"https://openalex.org/C127313418","wikidata":"https://www.wikidata.org/wiki/Q1069","display_name":"Geology","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1186/s12911-025-02852-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-025-02852-9","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/counter/pdf/10.1186/s12911-025-02852-9","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},{"id":"pmid:40102808","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40102808","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC medical informatics and decision making","raw_type":null},{"id":"pmh:oai:pure.qub.ac.uk/portal:openaire/2140c3f4-3b34-4e82-a792-f2ede4b85eff","is_oa":true,"landing_page_url":"https://pure.qub.ac.uk/en/publications/2140c3f4-3b34-4e82-a792-f2ede4b85eff","pdf_url":null,"source":{"id":"https://openalex.org/S4306402319","display_name":"Research Portal (Queen's University Belfast)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I126231945","host_organization_name":"Queen's University Belfast","host_organization_lineage":["https://openalex.org/I126231945"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Loughrey, C F, Maguire, S, D\u0142otko, P, Bai, L, Orr, N & Jurek-Loughrey, A 2025, 'A novel method for subgroup discovery in precision medicine based on topological data analysis', BMC Medical Informatics and Decision Making, vol. 25, 139. https://doi.org/10.1186/s12911-025-02852-9","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:doaj.org/article:139c06d2525948559885792fe8bbcd5c","is_oa":true,"landing_page_url":"https://doaj.org/article/139c06d2525948559885792fe8bbcd5c","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Medical Informatics and Decision Making, Vol 25, Iss 1, Pp 1-15 (2025)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:11921513","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11921513","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Med Inform Decis Mak","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12911-025-02852-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-025-02852-9","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/counter/pdf/10.1186/s12911-025-02852-9","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.5400000214576721}],"awards":[],"funders":[{"id":"https://openalex.org/F4320316531","display_name":"Department for the Economy","ror":"https://ror.org/0161w0r98"},{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"},{"id":"https://openalex.org/F4320322434","display_name":"Max-Planck-Gesellschaft","ror":"https://ror.org/01hhn8329"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4408553401.pdf"},"referenced_works_count":30,"referenced_works":["https://openalex.org/W1607787316","https://openalex.org/W1839682376","https://openalex.org/W1967997862","https://openalex.org/W1987971958","https://openalex.org/W1989757660","https://openalex.org/W1995450389","https://openalex.org/W2005895632","https://openalex.org/W2018838463","https://openalex.org/W2093402979","https://openalex.org/W2094397891","https://openalex.org/W2096283457","https://openalex.org/W2106292881","https://openalex.org/W2107385756","https://openalex.org/W2121891923","https://openalex.org/W2128728535","https://openalex.org/W2132619562","https://openalex.org/W2154187696","https://openalex.org/W2563845466","https://openalex.org/W2601243251","https://openalex.org/W2797507693","https://openalex.org/W2889326414","https://openalex.org/W2913907671","https://openalex.org/W2971781734","https://openalex.org/W2980147337","https://openalex.org/W3014671498","https://openalex.org/W3183719453","https://openalex.org/W3199022545","https://openalex.org/W4212796067","https://openalex.org/W4389988795","https://openalex.org/W6675354045"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2379637199","https://openalex.org/W2051487156","https://openalex.org/W4406532822","https://openalex.org/W2405057786","https://openalex.org/W2073681303","https://openalex.org/W2501832907","https://openalex.org/W2063054109"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,62],"Mapper":[2,53,110,130,147,209,284,334],"algorithm":[3,54,131,141,210,252],"is":[4,97,159],"a":[5,29,72,139,191,194,236,283,287],"data":[6,27,42,271],"mining":[7],"topological":[8],"tool":[9],"that":[10,84],"can":[11,315],"help":[12],"us":[13,327],"to":[14,66,71,101,121,151,161,175,186,219,268,281,328],"obtain":[15],"higher":[16],"level":[17],"understanding":[18],"of":[19,25,40,128,168,190,203,207,223,241,259,272,289,298,332],"disease":[20],"by":[21],"visualising":[22],"the":[23,44,52,82,91,109,129,146,152,188,198,204,208,221,224,231,262,333,337,343],"structure":[24],"patient":[26],"as":[28,154,157,193],"similarity":[30],"graph.":[31,148],"It":[32,77,325],"has":[33,78],"been":[34,79],"successfully":[35,253],"applied":[36,267,318],"for":[37,142,319],"exploratory":[38],"analysis":[39],"cancer":[41,275,309],"in":[43,55,81,132,230,244,305],"past,":[45],"delivering":[46],"several":[47],"significant":[48,88],"subgroup":[49,143,242,320],"discoveries.":[50],"Using":[51],"practice":[56],"requires":[57],"setting":[58],"up":[59],"multiple":[60],"parameters.":[61],"graph":[63,93,285],"then":[64],"needs":[65],"be":[67,122,316],"manually":[68],"analysed":[69],"according":[70],"research":[73],"question":[74],"at":[75],"hand.":[76],"highlighted":[80],"literature":[83],"Mapper's":[85],"parameters":[86,278,331],"have":[87],"impact":[89],"on":[90],"output":[92,118],"shape":[94],"and":[95,115,164,235,295,342],"there":[96],"no":[98],"established":[99],"way":[100],"select":[102],"their":[103,176],"optimal":[104,330],"values.":[105],"Hence":[106],"while":[107,196],"using":[108],"algorithm,":[111,225,335],"different":[112,117],"parameter":[113,199,212],"values":[114],"consequently":[116],"graphs":[119,255],"need":[120],"studied.":[123],"This":[124,301],"prevents":[125],"routine":[126],"application":[127],"real":[133,237],"world":[134,238],"settings.":[135],"METHODS:":[136],"We":[137,149],"propose":[138,185],"new":[140],"discovery":[144,243,321],"within":[145,261],"refer":[150],"task":[153],"hotspot":[155,192,229,250,288],"detection":[156,251],"it":[158],"designed":[160],"identify":[162],"homogenous":[163,257],"geometrically":[165],"compact":[166],"subsets":[167],"patients,":[169,276],"which":[170],"are":[171],"distinct":[172],"with":[173,292,322],"respect":[174],"clinical":[177],"or":[178],"molecular":[179],"profiles":[180],"(e.g.":[181],"survival).":[182],"Furthermore,":[183],"we":[184],"include":[187],"existence":[189],"criterion":[195],"searching":[197],"space,":[200],"addressing":[201],"one":[202],"key":[205],"limitations":[206],"(i.e.":[211],"selection).":[213],"RESULTS:":[214],"Two":[215,232,263],"experiments":[216],"were":[217,279],"performed":[218],"demonstrate":[220],"efficacy":[222],"including":[226],"an":[227,306],"artificial":[228],"Circles":[233,264],"dataset":[234],"case":[239],"study":[240],"oestrogen":[245],"receptor-positive":[246],"breast":[247,274,308],"cancer.":[248],"Our":[249,312],"identified":[254,280],"containing":[256],"communities":[258],"nodes":[260],"dataset.":[265,310],"When":[266],"gene":[269,299],"expression":[270],"ER+":[273,290],"appropriate":[277],"generate":[282],"revealing":[286],"patients":[291],"poor":[293],"prognosis":[294],"characteristic":[296],"patterns":[297],"expression.":[300],"was":[302],"subsequently":[303],"confirmed":[304],"independent":[307],"CONCLUSIONS:":[311],"proposed":[313],"method":[314],"effectively":[317],"pathology":[323],"data.":[324],"allows":[326],"find":[329],"bridging":[336],"gap":[338],"between":[339],"its":[340],"potential":[341],"translational":[344],"research.":[345]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1}],"updated_date":"2026-08-01T09:00:35.917206","created_date":"2025-10-10T00:00:00"}
