{"id":"https://openalex.org/W4405544300","doi":"https://doi.org/10.1186/s12911-024-02794-8","title":"Continuous prediction for tumor mutation burden based on transcriptional data in gastrointestinal cancers","display_name":"Continuous prediction for tumor mutation burden based on transcriptional data in gastrointestinal cancers","publication_year":2024,"publication_date":"2024-12-18","ids":{"openalex":"https://openalex.org/W4405544300","doi":"https://doi.org/10.1186/s12911-024-02794-8","pmid":"https://pubmed.ncbi.nlm.nih.gov/39695561"},"language":"en","primary_location":{"id":"doi:10.1186/s12911-024-02794-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-024-02794-8","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/counter/pdf/10.1186/s12911-024-02794-8","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcmedinformdecismak.biomedcentral.com/counter/pdf/10.1186/s12911-024-02794-8","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5024633742","display_name":"Beibei Hu","orcid":"https://orcid.org/0000-0002-6396-3854"},"institutions":[{"id":"https://openalex.org/I91656880","display_name":"China Medical University","ror":"https://ror.org/032d4f246","country_code":"CN","type":"education","lineage":["https://openalex.org/I91656880"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Beibei Hu","raw_affiliation_strings":["Department of Gastroenterology, First Affiliated Hospital of China Medical University, Shenyang, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Gastroenterology, First Affiliated Hospital of China Medical University, Shenyang, China","institution_ids":["https://openalex.org/I91656880"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114116851","display_name":"Guohui Yin","orcid":null},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Guohui Yin","raw_affiliation_strings":["Key Laboratory of Traffic Safety On Track (Central South University), Ministry of Education, School of Traffic and Transportation Engineering, Central South University, Changsha, 410075, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Traffic Safety On Track (Central South University), Ministry of Education, School of Traffic and Transportation Engineering, Central South University, Changsha, 410075, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101830202","display_name":"Jialin Zhu","orcid":"https://orcid.org/0000-0002-3126-2148"},"institutions":[{"id":"https://openalex.org/I91656880","display_name":"China Medical University","ror":"https://ror.org/032d4f246","country_code":"CN","type":"education","lineage":["https://openalex.org/I91656880"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jialin Zhu","raw_affiliation_strings":["Department of Gastroenterology, First Affiliated Hospital of China Medical University, Shenyang, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Gastroenterology, First Affiliated Hospital of China Medical University, Shenyang, China","institution_ids":["https://openalex.org/I91656880"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101177456","display_name":"Yi Bai","orcid":null},"institutions":[{"id":"https://openalex.org/I91656880","display_name":"China Medical University","ror":"https://ror.org/032d4f246","country_code":"CN","type":"education","lineage":["https://openalex.org/I91656880"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yi Bai","raw_affiliation_strings":["Department of Gastroenterology, First Affiliated Hospital of China Medical University, Shenyang, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Gastroenterology, First Affiliated Hospital of China Medical University, Shenyang, China","institution_ids":["https://openalex.org/I91656880"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5056164719","display_name":"Xuren Sun","orcid":"https://orcid.org/0000-0003-1435-6182"},"institutions":[{"id":"https://openalex.org/I4210140515","display_name":"First Hospital of China Medical University","ror":"https://ror.org/04wjghj95","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210140515"]},{"id":"https://openalex.org/I91656880","display_name":"China Medical University","ror":"https://ror.org/032d4f246","country_code":"CN","type":"education","lineage":["https://openalex.org/I91656880"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xuren Sun","raw_affiliation_strings":["Department of Gastroenterology, First Affiliated Hospital of China Medical University, Shenyang, China. sxr679@126.com","Department of Gastroenterology, First Affiliated Hospital of China Medical University, Shenyang, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Gastroenterology, First Affiliated Hospital of China Medical University, Shenyang, China. sxr679@126.com","institution_ids":["https://openalex.org/I91656880","https://openalex.org/I4210140515"]},{"raw_affiliation_string":"Department of Gastroenterology, First Affiliated Hospital of China Medical University, Shenyang, China","institution_ids":["https://openalex.org/I91656880"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5024633742"],"corresponding_institution_ids":["https://openalex.org/I91656880"],"apc_list":{"value":1570,"currency":"GBP","value_usd":1925},"apc_paid":{"value":1570,"currency":"GBP","value_usd":1925},"fwci":1.8783,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.87221903,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"24","issue":"1","first_page":"384","last_page":"384"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11297","display_name":"Ferroptosis and cancer prognosis","score":0.5033000111579895,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11297","display_name":"Ferroptosis and cancer prognosis","score":0.5033000111579895,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10158","display_name":"Cancer Immunotherapy and Biomarkers","score":0.4505999982357025,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12422","display_name":"Radiomics and Machine Learning in Medical Imaging","score":0.0052999998442828655,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/kegg","display_name":"KEGG","score":0.5899468660354614},{"id":"https://openalex.org/keywords/mutation","display_name":"Mutation","score":0.5521116852760315},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.5415025949478149},{"id":"https://openalex.org/keywords/adenocarcinoma","display_name":"Adenocarcinoma","score":0.534919798374176},{"id":"https://openalex.org/keywords/germline-mutation","display_name":"Germline mutation","score":0.5298214554786682},{"id":"https://openalex.org/keywords/mutation-frequency","display_name":"Mutation frequency","score":0.4103803336620331},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3967175781726837},{"id":"https://openalex.org/keywords/oncology","display_name":"Oncology","score":0.3749873638153076},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3720022439956665},{"id":"https://openalex.org/keywords/cancer-research","display_name":"Cancer research","score":0.3717743158340454},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.36218565702438354},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.35615599155426025},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.32510170340538025},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.22638487815856934},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.1398516595363617}],"concepts":[{"id":"https://openalex.org/C152724338","wikidata":"https://www.wikidata.org/wiki/Q909442","display_name":"KEGG","level":5,"score":0.5899468660354614},{"id":"https://openalex.org/C501734568","wikidata":"https://www.wikidata.org/wiki/Q42918","display_name":"Mutation","level":3,"score":0.5521116852760315},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.5415025949478149},{"id":"https://openalex.org/C2781182431","wikidata":"https://www.wikidata.org/wiki/Q356033","display_name":"Adenocarcinoma","level":3,"score":0.534919798374176},{"id":"https://openalex.org/C13514818","wikidata":"https://www.wikidata.org/wiki/Q5552256","display_name":"Germline mutation","level":4,"score":0.5298214554786682},{"id":"https://openalex.org/C102306862","wikidata":"https://www.wikidata.org/wiki/Q6943735","display_name":"Mutation frequency","level":4,"score":0.4103803336620331},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3967175781726837},{"id":"https://openalex.org/C143998085","wikidata":"https://www.wikidata.org/wiki/Q162555","display_name":"Oncology","level":1,"score":0.3749873638153076},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3720022439956665},{"id":"https://openalex.org/C502942594","wikidata":"https://www.wikidata.org/wiki/Q3421914","display_name":"Cancer research","level":1,"score":0.3717743158340454},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.36218565702438354},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.35615599155426025},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.32510170340538025},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.22638487815856934},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.1398516595363617}],"mesh":[{"descriptor_ui":"D005770","descriptor_name":"Gastrointestinal Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D005770","descriptor_name":"Gastrointestinal Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D005770","descriptor_name":"Gastrointestinal Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D005770","descriptor_name":"Gastrointestinal Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12911-024-02794-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-024-02794-8","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/counter/pdf/10.1186/s12911-024-02794-8","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},{"id":"pmid:39695561","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39695561","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC medical informatics and decision making","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11654420","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11654420","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11654420/pdf/12911_2024_Article_2794.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Med Inform Decis Mak","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:c04e348e8a7b49b1a4774404bc9173e0","is_oa":false,"landing_page_url":"https://doaj.org/article/c04e348e8a7b49b1a4774404bc9173e0","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Medical Informatics and Decision Making, Vol 24, Iss 1, Pp 1-14 (2024)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s12911-024-02794-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-024-02794-8","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/counter/pdf/10.1186/s12911-024-02794-8","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.4099999964237213,"id":"https://metadata.un.org/sdg/3"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4405544300.pdf","grobid_xml":"https://content.openalex.org/works/W4405544300.grobid-xml"},"referenced_works_count":37,"referenced_works":["https://openalex.org/W2149668671","https://openalex.org/W2152897456","https://openalex.org/W2340861895","https://openalex.org/W2441279986","https://openalex.org/W2533413403","https://openalex.org/W2560367415","https://openalex.org/W2858796271","https://openalex.org/W2886368623","https://openalex.org/W2888664067","https://openalex.org/W2916508569","https://openalex.org/W2954094199","https://openalex.org/W2955428995","https://openalex.org/W2956286257","https://openalex.org/W2971642860","https://openalex.org/W3011365425","https://openalex.org/W3032082497","https://openalex.org/W3044997214","https://openalex.org/W3093978045","https://openalex.org/W3108702130","https://openalex.org/W3112196594","https://openalex.org/W3119360193","https://openalex.org/W3120491558","https://openalex.org/W3128646645","https://openalex.org/W3129874756","https://openalex.org/W3130139027","https://openalex.org/W3131574742","https://openalex.org/W3133594843","https://openalex.org/W3134978829","https://openalex.org/W3135079680","https://openalex.org/W3137841185","https://openalex.org/W3143335768","https://openalex.org/W3146935595","https://openalex.org/W3164332865","https://openalex.org/W3181087510","https://openalex.org/W3193517313","https://openalex.org/W4200604000","https://openalex.org/W4313472327"],"related_works":["https://openalex.org/W1964572291","https://openalex.org/W4387948744","https://openalex.org/W1987520879","https://openalex.org/W2352732738","https://openalex.org/W2123060905","https://openalex.org/W4403810263","https://openalex.org/W2559588208","https://openalex.org/W1984964356","https://openalex.org/W2297026197","https://openalex.org/W70936794"],"abstract_inverted_index":{"BACKGROUND:":[0],"Tumor":[1],"mutation":[2,55,88],"burden":[3],"(TMB)":[4],"has":[5],"been":[6],"considered":[7],"a":[8,43,109,250],"biomarker":[9],"for":[10,29,45,117],"utilization":[11],"of":[12,39,60,86,131,146,154,206,232,246],"immune":[13,148,233],"checkpoint":[14],"inhibitors(ICIs),":[15],"but":[16],"whole":[17],"exome":[18],"sequencing(WES)":[19],"and":[20,57,76,102,128,169,184,195,201,212,224],"cancer":[21,68],"gene":[22,97],"panel(CGP)":[23],"based":[24,240],"on":[25,241],"next":[26],"generation":[27],"sequencing":[28],"TMB":[30,46,104,118,126,155,216,228,245],"detection":[31],"are":[32],"costly.":[33],"Here,":[34],"we":[35,82],"use":[36],"transcriptome":[37],"data":[38,56,59],"TCGA":[40],"to":[41,158],"construct":[42],"model":[44,114,173,239],"prediction":[47],"in":[48,106,123,178,221,249],"gastrointestinal":[49,62,222,247],"tumors.":[50],"METHODS:":[51],"Transcriptome":[52],"data,":[53,89],"somatic":[54,87],"clinical":[58,159],"four":[61],"tumors":[63,248],"from":[64],"TCGA,":[65],"including":[66],"esophageal":[67],"(ESCA),":[69],"stomach":[70],"adenocarcinoma":[71,74,78],"(STAD),":[72],"colon":[73],"(COAD)":[75],"rectal":[77],"(READ).":[79],"Using":[80],"R,":[81],"performed":[83],"visual":[84],"analysis":[85,100],"differentially":[90],"expressed":[91],"genes":[92,243],"(DEGs)":[93],"function":[94],"enrichment":[95,99],"analysis,":[96],"set":[98],"(GSEA),":[101],"estimated":[103],"value":[105],"clinic.":[107],"Finally,":[108],"deep":[110],"neural":[111],"network":[112],"(DNN)":[113],"was":[115,156],"constructed":[116],"prediction.":[119],"RESULTS:":[120],"T":[121],"cells":[122,149],"the":[124,129,140,179,187,204,237],"high":[125,227,251],"group":[127,142],"activation":[130],"tumor":[132],"suppressing":[133],"pathways.":[134],"Single-sample":[135],"GSEA":[136],"(ssGSEA)":[137],"manifested":[138],"that":[139],"high-TMB":[141],"had":[143],"higher":[144,230],"level":[145],"multiple":[147],"infiltration.":[150,234],"In":[151,235],"addition,":[152,236],"distribution":[153],"related":[157],"parameters.":[160],"Like":[161],"age,":[162],"M":[163],"stage,":[164,166,168],"N":[165],"AJCC":[167],"overall":[170],"survival(OS).":[171],"After":[172],"optimization":[174],"using":[175],"genetic":[176],"algorithm,":[177],"training":[180],"set,":[181,183,186],"validation":[182],"testing":[185],"Pearson":[188],"relevance":[189],"coefficient":[190,205],"r":[191],"between":[192],"predicted":[193],"values":[194,197],"actual":[196],"reaches":[198],"0.98,":[199],"0.82,":[200,211],"0.92,":[202],"respectively;":[203],"determination":[207],"R2":[208],"is":[209],"0.95,":[210],"0.7,":[213],"respectively.":[214],"CONCLUSION:":[215],"correlates":[217],"with":[218,226],"clinicopathological":[219],"parameters":[220],"carcinoma,":[223],"patients":[225],"have":[229],"levels":[231],"DNN":[238],"31":[242],"predicts":[244],"accuracy.":[252]},"counts_by_year":[{"year":2026,"cited_by_count":5}],"updated_date":"2026-05-21T09:19:25.381259","created_date":"2025-10-10T00:00:00"}
