{"id":"https://openalex.org/W4403064636","doi":"https://doi.org/10.1186/s12911-024-02677-y","title":"Validation of large language models for detecting pathologic complete response in breast cancer using population-based pathology reports","display_name":"Validation of large language models for detecting pathologic complete response in breast cancer using population-based pathology reports","publication_year":2024,"publication_date":"2024-10-03","ids":{"openalex":"https://openalex.org/W4403064636","doi":"https://doi.org/10.1186/s12911-024-02677-y","pmid":"https://pubmed.ncbi.nlm.nih.gov/39363322"},"language":"en","primary_location":{"id":"doi:10.1186/s12911-024-02677-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-024-02677-y","pdf_url":"https://link.springer.com/content/pdf/10.1186/s12911-024-02677-y.pdf","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://link.springer.com/content/pdf/10.1186/s12911-024-02677-y.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5107698515","display_name":"Ken Cheligeer","orcid":null},"institutions":[{"id":"https://openalex.org/I126859394","display_name":"Alberta Health Services","ror":"https://ror.org/02nt5es71","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I126859394"]},{"id":"https://openalex.org/I168635309","display_name":"University of Calgary","ror":"https://ror.org/03yjb2x39","country_code":"CA","type":"education","lineage":["https://openalex.org/I168635309"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Ken Cheligeer","raw_affiliation_strings":["Provincial Research Data Services, Alberta Health Services, Calgary, Canada","The Centre for Health Informatics, Cumming School of Medicine, University of Calgary, Calgary, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Provincial Research Data Services, Alberta Health Services, Calgary, Canada","institution_ids":["https://openalex.org/I126859394"]},{"raw_affiliation_string":"The Centre for Health Informatics, Cumming School of Medicine, University of Calgary, Calgary, Canada","institution_ids":["https://openalex.org/I168635309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061073174","display_name":"Guosong Wu","orcid":"https://orcid.org/0000-0003-0440-0784"},"institutions":[{"id":"https://openalex.org/I168635309","display_name":"University of Calgary","ror":"https://ror.org/03yjb2x39","country_code":"CA","type":"education","lineage":["https://openalex.org/I168635309"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Guosong Wu","raw_affiliation_strings":["Department of Community Health Sciences, Cumming School of Medicine, University of Calgary, Calgary, Canada","The Centre for Health Informatics, Cumming School of Medicine, University of Calgary, Calgary, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Community Health Sciences, Cumming School of Medicine, University of Calgary, Calgary, Canada","institution_ids":["https://openalex.org/I168635309"]},{"raw_affiliation_string":"The Centre for Health Informatics, Cumming School of Medicine, University of Calgary, Calgary, Canada","institution_ids":["https://openalex.org/I168635309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020313654","display_name":"Alison Laws","orcid":"https://orcid.org/0000-0002-9933-6705"},"institutions":[{"id":"https://openalex.org/I168635309","display_name":"University of Calgary","ror":"https://ror.org/03yjb2x39","country_code":"CA","type":"education","lineage":["https://openalex.org/I168635309"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Alison Laws","raw_affiliation_strings":["Department of Oncology, Cumming School of Medicine, University of Calgary, Calgary, Canada","Department of Surgery, Cumming School of Medicine, University of Calgary, Calgary, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Oncology, Cumming School of Medicine, University of Calgary, Calgary, Canada","institution_ids":["https://openalex.org/I168635309"]},{"raw_affiliation_string":"Department of Surgery, Cumming School of Medicine, University of Calgary, Calgary, Canada","institution_ids":["https://openalex.org/I168635309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002727433","display_name":"May Lynn Quan","orcid":"https://orcid.org/0000-0003-2603-0411"},"institutions":[{"id":"https://openalex.org/I168635309","display_name":"University of Calgary","ror":"https://ror.org/03yjb2x39","country_code":"CA","type":"education","lineage":["https://openalex.org/I168635309"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"May Lynn Quan","raw_affiliation_strings":["Department of Community Health Sciences, Cumming School of Medicine, University of Calgary, Calgary, Canada","Department of Oncology, Cumming School of Medicine, University of Calgary, Calgary, Canada","Department of Surgery, Cumming School of Medicine, University of Calgary, Calgary, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Community Health Sciences, Cumming School of Medicine, University of Calgary, Calgary, Canada","institution_ids":["https://openalex.org/I168635309"]},{"raw_affiliation_string":"Department of Oncology, Cumming School of Medicine, University of Calgary, Calgary, Canada","institution_ids":["https://openalex.org/I168635309"]},{"raw_affiliation_string":"Department of Surgery, Cumming School of Medicine, University of Calgary, Calgary, Canada","institution_ids":["https://openalex.org/I168635309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091714215","display_name":"Amin Li","orcid":"https://orcid.org/0009-0001-4695-3232"},"institutions":[{"id":"https://openalex.org/I168635309","display_name":"University of Calgary","ror":"https://ror.org/03yjb2x39","country_code":"CA","type":"education","lineage":["https://openalex.org/I168635309"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Andrea Li","raw_affiliation_strings":["The Centre for Health Informatics, Cumming School of Medicine, University of Calgary, Calgary, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Centre for Health Informatics, Cumming School of Medicine, University of Calgary, Calgary, Canada","institution_ids":["https://openalex.org/I168635309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072921479","display_name":"Anne-Marie Brisson","orcid":null},"institutions":[{"id":"https://openalex.org/I168635309","display_name":"University of Calgary","ror":"https://ror.org/03yjb2x39","country_code":"CA","type":"education","lineage":["https://openalex.org/I168635309"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Anne-Marie Brisson","raw_affiliation_strings":["Department of Radiology, Cumming School of Medicine, University of Calgary, Calgary, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Radiology, Cumming School of Medicine, University of Calgary, Calgary, Canada","institution_ids":["https://openalex.org/I168635309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101699813","display_name":"Jason Xie","orcid":"https://orcid.org/0000-0003-3518-2011"},"institutions":[{"id":"https://openalex.org/I168635309","display_name":"University of Calgary","ror":"https://ror.org/03yjb2x39","country_code":"CA","type":"education","lineage":["https://openalex.org/I168635309"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Jason Xie","raw_affiliation_strings":["The Centre for Health Informatics, Cumming School of Medicine, University of Calgary, Calgary, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Centre for Health Informatics, Cumming School of Medicine, University of Calgary, Calgary, Canada","institution_ids":["https://openalex.org/I168635309"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5069526766","display_name":"Yuan Xu","orcid":"https://orcid.org/0000-0003-2100-9437"},"institutions":[{"id":"https://openalex.org/I168635309","display_name":"University of Calgary","ror":"https://ror.org/03yjb2x39","country_code":"CA","type":"education","lineage":["https://openalex.org/I168635309"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Yuan Xu","raw_affiliation_strings":["Department of Community Health Sciences, Cumming School of Medicine, University of Calgary, Calgary, Canada. yuxu@ucalgary.ca","Department of Oncology, Cumming School of Medicine, University of Calgary, Calgary, Canada. yuxu@ucalgary.ca","Department of Surgery, Cumming School of Medicine, University of Calgary, Calgary, Canada. yuxu@ucalgary.ca","The Centre for Health Informatics, Cumming School of Medicine, University of Calgary, Calgary, Canada. yuxu@ucalgary.ca"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Community Health Sciences, Cumming School of Medicine, University of Calgary, Calgary, Canada. yuxu@ucalgary.ca","institution_ids":["https://openalex.org/I168635309"]},{"raw_affiliation_string":"Department of Oncology, Cumming School of Medicine, University of Calgary, Calgary, Canada. yuxu@ucalgary.ca","institution_ids":["https://openalex.org/I168635309"]},{"raw_affiliation_string":"Department of Surgery, Cumming School of Medicine, University of Calgary, Calgary, Canada. yuxu@ucalgary.ca","institution_ids":["https://openalex.org/I168635309"]},{"raw_affiliation_string":"The Centre for Health Informatics, Cumming School of Medicine, University of Calgary, Calgary, Canada. yuxu@ucalgary.ca","institution_ids":["https://openalex.org/I168635309"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5069526766"],"corresponding_institution_ids":["https://openalex.org/I168635309"],"apc_list":{"value":1570,"currency":"GBP","value_usd":2690},"apc_paid":{"value":1570,"currency":"GBP","value_usd":2690},"fwci":4.6252,"has_fulltext":true,"cited_by_count":19,"citation_normalized_percentile":{"value":0.95347475,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"24","issue":"1","first_page":"283","last_page":"283"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.7444999814033508,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.7444999814033508,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.03590000048279762,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.0333000011742115,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/health-informatics","display_name":"Health informatics","score":0.6437495350837708},{"id":"https://openalex.org/keywords/breast-cancer","display_name":"Breast cancer","score":0.5566123723983765},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.5408329367637634},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.5170196294784546},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.4817821681499481},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.3745165467262268},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3514467179775238},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.3303712010383606},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.22452914714813232},{"id":"https://openalex.org/keywords/public-health","display_name":"Public health","score":0.18047919869422913}],"concepts":[{"id":"https://openalex.org/C145642194","wikidata":"https://www.wikidata.org/wiki/Q870895","display_name":"Health informatics","level":3,"score":0.6437495350837708},{"id":"https://openalex.org/C530470458","wikidata":"https://www.wikidata.org/wiki/Q128581","display_name":"Breast cancer","level":3,"score":0.5566123723983765},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.5408329367637634},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.5170196294784546},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.4817821681499481},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.3745165467262268},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3514467179775238},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.3303712010383606},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.22452914714813232},{"id":"https://openalex.org/C138816342","wikidata":"https://www.wikidata.org/wiki/Q189603","display_name":"Public health","level":2,"score":0.18047919869422913},{"id":"https://openalex.org/C99454951","wikidata":"https://www.wikidata.org/wiki/Q932068","display_name":"Environmental health","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000095384","descriptor_name":"Pathologic Complete Response","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000095384","descriptor_name":"Pathologic Complete Response","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000095384","descriptor_name":"Pathologic Complete Response","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000095384","descriptor_name":"Pathologic Complete Response","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000328","descriptor_name":"Adult","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000328","descriptor_name":"Adult","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000328","descriptor_name":"Adult","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000328","descriptor_name":"Adult","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000368","descriptor_name":"Aged","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000368","descriptor_name":"Aged","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000368","descriptor_name":"Aged","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000368","descriptor_name":"Aged","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":true},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":true},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":true},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":true},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008875","descriptor_name":"Middle Aged","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008875","descriptor_name":"Middle Aged","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008875","descriptor_name":"Middle Aged","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008875","descriptor_name":"Middle Aged","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020360","descriptor_name":"Neoadjuvant Therapy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020360","descriptor_name":"Neoadjuvant Therapy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020360","descriptor_name":"Neoadjuvant Therapy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020360","descriptor_name":"Neoadjuvant Therapy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12911-024-02677-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-024-02677-y","pdf_url":"https://link.springer.com/content/pdf/10.1186/s12911-024-02677-y.pdf","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},{"id":"pmid:39363322","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39363322","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC medical informatics and decision making","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11447988","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11447988","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11447988/pdf/12911_2024_Article_2677.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Med Inform Decis Mak","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:4e51dba5ce064e49aca9865aa0b02db1","is_oa":false,"landing_page_url":"https://doaj.org/article/4e51dba5ce064e49aca9865aa0b02db1","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Medical Informatics and Decision Making, Vol 24, Iss 1, Pp 1-9 (2024)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s12911-024-02677-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-024-02677-y","pdf_url":"https://link.springer.com/content/pdf/10.1186/s12911-024-02677-y.pdf","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.6299999952316284,"id":"https://metadata.un.org/sdg/3"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320334506","display_name":"Canadian Institutes of Health Research","ror":"https://ror.org/01gavpb45"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4403064636.pdf","grobid_xml":"https://content.openalex.org/works/W4403064636.grobid-xml"},"referenced_works_count":33,"referenced_works":["https://openalex.org/W1884459103","https://openalex.org/W1997612497","https://openalex.org/W2025644430","https://openalex.org/W2065000080","https://openalex.org/W2075894019","https://openalex.org/W2099552652","https://openalex.org/W2131241448","https://openalex.org/W2148143831","https://openalex.org/W2151068025","https://openalex.org/W2470052812","https://openalex.org/W2532802663","https://openalex.org/W2606769376","https://openalex.org/W2963716420","https://openalex.org/W2966351171","https://openalex.org/W2970971581","https://openalex.org/W2981852735","https://openalex.org/W3008003211","https://openalex.org/W3034999214","https://openalex.org/W3035965352","https://openalex.org/W3099878876","https://openalex.org/W3102251128","https://openalex.org/W3105966348","https://openalex.org/W3126897851","https://openalex.org/W3135028703","https://openalex.org/W4283785590","https://openalex.org/W4312065903","https://openalex.org/W4312220150","https://openalex.org/W4361289889","https://openalex.org/W4384561707","https://openalex.org/W4387230383","https://openalex.org/W4390148007","https://openalex.org/W4391225177","https://openalex.org/W6847076894"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2375584271","https://openalex.org/W1997105855","https://openalex.org/W4301030387","https://openalex.org/W2414286769","https://openalex.org/W2013223288","https://openalex.org/W2186113122","https://openalex.org/W1523310174","https://openalex.org/W3015743358","https://openalex.org/W2037827305"],"abstract_inverted_index":{"AIMS:":[0],"The":[1,67,189,212,236],"primary":[2],"goal":[3],"of":[4,12,31,48,109,134,143,169,177,185,204,218,239,277],"this":[5],"study":[6,68,213],"is":[7],"to":[8,26,43,45,103,129,270],"evaluate":[9],"the":[10,29,46,78,105,114,131,163,202,216,264,272],"capabilities":[11],"Large":[13],"Language":[14],"Models":[15],"(LLMs)":[16],"in":[17,36,161,206,220,231,249],"understanding":[18],"and":[19,53,61,95,154,159,181,222,251,274],"processing":[20,223],"complex":[21],"medical":[22],"documentation.":[23],"We":[24],"chose":[25],"focus":[27],"on":[28,100],"identification":[30],"pathologic":[32],"complete":[33],"response":[34],"(pCR)":[35],"narrative":[37,257],"pathology":[38,88,137,208,225],"reports.":[39,138,258],"This":[40],"approach":[41],"aims":[42],"contribute":[44],"advancement":[47],"comprehensive":[49],"reporting,":[50],"health":[51,55],"research,":[52],"public":[54],"surveillance,":[56],"thereby":[57],"enhancing":[58],"patient":[59],"care":[60],"breast":[62,146,232],"cancer":[63,147,233],"management":[64],"strategies.":[65],"METHODS:":[66],"utilized":[69],"two":[70],"analytical":[71],"pipelines,":[72],"developed":[73],"with":[74],"open-source":[75],"LLMs":[76,205,219],"within":[77],"healthcare":[79],"system's":[80],"computing":[81],"environment.":[82],"First,":[83],"we":[84,112],"extracted":[85],"embeddings":[86,102],"from":[87,136,256],"reports":[89],"using":[90],"15":[91],"different":[92],"transformer-based":[93],"models":[94,244],"then":[96],"employed":[97],"logistic":[98],"regression":[99],"these":[101,261,278],"classify":[104],"presence":[106],"or":[107],"absence":[108],"pCR.":[110],"Secondly,":[111],"fine-tuned":[113],"Generative":[115],"Pre-trained":[116],"Transformer-2":[117],"(GPT-2)":[118],"model":[119],"by":[120],"attaching":[121],"a":[122,141,167,173],"simple":[123],"feed-forward":[124],"neural":[125],"network":[126],"(FFNN)":[127],"layer":[128],"improve":[130],"detection":[132],"performance":[133,238],"pCR":[135,230],"RESULTS:":[139],"In":[140],"cohort":[142],"351":[144],"female":[145],"patients":[148,234],"who":[149],"underwent":[150],"neoadjuvant":[151],"chemotherapy":[152],"(NAC)":[153],"subsequent":[155],"surgery":[156],"between":[157],"2010":[158],"2017":[160],"Calgary,":[162],"optimized":[164],"method":[165],"displayed":[166],"sensitivity":[168],"95.3%":[170],"(95%CI:":[171,179,187],"84.0-100.0%),":[172],"positive":[174],"predictive":[175],"value":[176],"90.9%":[178],"76.5-100.0%),":[180],"an":[182],"F1":[183],"score":[184],"93.0%":[186],"83.7-100.0%).":[188],"results,":[190],"achieved":[191],"through":[192],"diverse":[193],"LLM":[194],"integration,":[195],"surpassed":[196],"traditional":[197,243],"machine":[198],"learning":[199],"models,":[200],"underscoring":[201],"potential":[203,248],"clinical":[207,254],"information":[209],"extraction.":[210],"CONCLUSIONS:":[211],"successfully":[214],"demonstrates":[215],"efficacy":[217],"interpreting":[221],"digital":[224],"data,":[226],"particularly":[227],"for":[228,266],"determining":[229],"post-NAC.":[235],"superior":[237],"LLM-based":[240],"pipelines":[241],"over":[242],"highlights":[245],"their":[246],"significant":[247],"extracting":[250],"analyzing":[252],"key":[253],"data":[255],"While":[259],"promising,":[260],"findings":[262],"highlight":[263],"need":[265],"future":[267],"external":[268],"validation":[269],"confirm":[271],"reliability":[273],"broader":[275],"applicability":[276],"methods.":[279]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":15}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
