{"id":"https://openalex.org/W4402602186","doi":"https://doi.org/10.1186/s12911-024-02662-5","title":"Development of message passing-based graph convolutional networks for classifying cancer pathology reports","display_name":"Development of message passing-based graph convolutional networks for classifying cancer pathology reports","publication_year":2024,"publication_date":"2024-09-17","ids":{"openalex":"https://openalex.org/W4402602186","doi":"https://doi.org/10.1186/s12911-024-02662-5","pmid":"https://pubmed.ncbi.nlm.nih.gov/39289714"},"language":"en","primary_location":{"id":"doi:10.1186/s12911-024-02662-5","is_oa":true,"landing_page_url":"http://dx.doi.org/10.1186/s12911-024-02662-5","pdf_url":"https://link.springer.com/content/pdf/10.1186/s12911-024-02662-5.pdf","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://link.springer.com/content/pdf/10.1186/s12911-024-02662-5.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5054049458","display_name":"Hong\u2010Jun Yoon","orcid":"https://orcid.org/0000-0002-5450-5878"},"institutions":[{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Hong-Jun Yoon","raw_affiliation_strings":["Computational Sciences and Engineering Division, Oak Ridge National Laboratory, 1 Bethel Valley Road, Oak Ridge, Tennessee, 37830, USA. yoonh@ornl.gov"],"raw_orcid":"https://orcid.org/0000-0002-5450-5878","affiliations":[{"raw_affiliation_string":"Computational Sciences and Engineering Division, Oak Ridge National Laboratory, 1 Bethel Valley Road, Oak Ridge, Tennessee, 37830, USA. yoonh@ornl.gov","institution_ids":["https://openalex.org/I1289243028"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024097433","display_name":"Hilda Klasky","orcid":"https://orcid.org/0000-0001-7235-2521"},"institutions":[{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hilda B. Klasky","raw_affiliation_strings":["Computational Sciences and Engineering Division, Oak Ridge National Laboratory, 1 Bethel Valley Road, Oak Ridge, Tennessee, 37830, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Sciences and Engineering Division, Oak Ridge National Laboratory, 1 Bethel Valley Road, Oak Ridge, Tennessee, 37830, USA","institution_ids":["https://openalex.org/I1289243028"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019868556","display_name":"Andrew E. Blanchard","orcid":"https://orcid.org/0000-0001-7330-9656"},"institutions":[{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andrew\u00a0E. Blanchard","raw_affiliation_strings":["Computational Sciences and Engineering Division, Oak Ridge National Laboratory, 1 Bethel Valley Road, Oak Ridge, Tennessee, 37830, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Sciences and Engineering Division, Oak Ridge National Laboratory, 1 Bethel Valley Road, Oak Ridge, Tennessee, 37830, USA","institution_ids":["https://openalex.org/I1289243028"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037444677","display_name":"J. Blair Christian","orcid":"https://orcid.org/0000-0002-4658-1635"},"institutions":[{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"J. Blair Christian","raw_affiliation_strings":["Computational Sciences and Engineering Division, Oak Ridge National Laboratory, 1 Bethel Valley Road, Oak Ridge, Tennessee, 37830, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Sciences and Engineering Division, Oak Ridge National Laboratory, 1 Bethel Valley Road, Oak Ridge, Tennessee, 37830, USA","institution_ids":["https://openalex.org/I1289243028"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044901389","display_name":"Eric B. Durbin","orcid":"https://orcid.org/0000-0002-5600-7645"},"institutions":[{"id":"https://openalex.org/I143302722","display_name":"University of Kentucky","ror":"https://ror.org/02k3smh20","country_code":"US","type":"education","lineage":["https://openalex.org/I143302722"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Eric\u00a0B. Durbin","raw_affiliation_strings":["College of Medicine, University of Kentucky, Lexington, Kentucky, 24105, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Medicine, University of Kentucky, Lexington, Kentucky, 24105, USA","institution_ids":["https://openalex.org/I143302722"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108317437","display_name":"Xiao-Cheng Wu","orcid":null},"institutions":[{"id":"https://openalex.org/I75420490","display_name":"Louisiana State University Health Sciences Center New Orleans","ror":"https://ror.org/01qv8fp92","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I75420490"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xiao-Cheng Wu","raw_affiliation_strings":["Louisiana Tumor Registry, Louisiana State University Health Sciences Center, School of Public Health, New Orleans, Louisiana, 70112, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Louisiana Tumor Registry, Louisiana State University Health Sciences Center, School of Public Health, New Orleans, Louisiana, 70112, USA","institution_ids":["https://openalex.org/I75420490"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000035861","display_name":"Antoinette M. Stroup","orcid":"https://orcid.org/0000-0003-3341-4018"},"institutions":[{"id":"https://openalex.org/I102322142","display_name":"Rutgers, The State University of New Jersey","ror":"https://ror.org/05vt9qd57","country_code":"US","type":"education","lineage":["https://openalex.org/I102322142"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Antoinette Stroup","raw_affiliation_strings":["New Jersey State Cancer Registry, Rutgers Cancer Institute of New Jersey, New Brunswick, New Jersey, 08901, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"New Jersey State Cancer Registry, Rutgers Cancer Institute of New Jersey, New Brunswick, New Jersey, 08901, USA","institution_ids":["https://openalex.org/I102322142"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075544315","display_name":"Jennifer A. Doherty","orcid":"https://orcid.org/0000-0002-1454-8187"},"institutions":[{"id":"https://openalex.org/I2801159745","display_name":"Huntsman Cancer Institute","ror":"https://ror.org/03v7tx966","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2801159745","https://openalex.org/I4210148268"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jennifer Doherty","raw_affiliation_strings":["Utah Cancer Registry, Huntsman Cancer Institute, University of Utah, Salt Lake City, Utah, 84132, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Utah Cancer Registry, Huntsman Cancer Institute, University of Utah, Salt Lake City, Utah, 84132, USA","institution_ids":["https://openalex.org/I2801159745"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066875900","display_name":"Linda Coyle","orcid":null},"institutions":[{"id":"https://openalex.org/I4210110061","display_name":"Information Management Services","ror":"https://ror.org/020k7fn51","country_code":"US","type":"company","lineage":["https://openalex.org/I4210110061"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Linda Coyle","raw_affiliation_strings":["Information Management Services, Inc., Calverton, Maryland, 20705, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Information Management Services, Inc., Calverton, Maryland, 20705, USA","institution_ids":["https://openalex.org/I4210110061"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102866470","display_name":"Lynne Penberthy","orcid":"https://orcid.org/0000-0002-9961-8139"},"institutions":[{"id":"https://openalex.org/I4210140884","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210140884"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lynne Penberthy","raw_affiliation_strings":["Surveillance Research Program, Division of Cancer Control and Population Sciences National Cancer Institute, Bethesda, MD, 20814, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Surveillance Research Program, Division of Cancer Control and Population Sciences National Cancer Institute, Bethesda, MD, 20814, USA","institution_ids":["https://openalex.org/I4210140884"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5014968146","display_name":"Georgia D. Tourassi","orcid":"https://orcid.org/0000-0002-9418-9638"},"institutions":[{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Georgia\u00a0D. Tourassi","raw_affiliation_strings":["National Center for Computational Sciences, Oak Ridge National Laboratory, Oak Ridge, Tennessee, 37830, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Center for Computational Sciences, Oak Ridge National Laboratory, Oak Ridge, Tennessee, 37830, USA","institution_ids":["https://openalex.org/I1289243028"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":11,"corresponding_author_ids":["https://openalex.org/A5054049458"],"corresponding_institution_ids":["https://openalex.org/I1289243028"],"apc_list":{"value":1570,"currency":"GBP","value_usd":1925},"apc_paid":{"value":1570,"currency":"GBP","value_usd":1925},"fwci":0.2995,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.6443698,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":97},"biblio":{"volume":"24","issue":"S5","first_page":"262","last_page":"262"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.22910000383853912,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.22910000383853912,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.19470000267028809,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.188400000333786,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8263409733772278},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5527563691139221},{"id":"https://openalex.org/keywords/message-passing","display_name":"Message passing","score":0.47394540905952454},{"id":"https://openalex.org/keywords/embedding","display_name":"Embedding","score":0.4332045912742615},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4242990016937256},{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.4182592034339905},{"id":"https://openalex.org/keywords/node","display_name":"Node (physics)","score":0.41823622584342957},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.39709219336509705},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.3416286110877991},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.1356053352355957}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8263409733772278},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5527563691139221},{"id":"https://openalex.org/C854659","wikidata":"https://www.wikidata.org/wiki/Q1859284","display_name":"Message passing","level":2,"score":0.47394540905952454},{"id":"https://openalex.org/C41608201","wikidata":"https://www.wikidata.org/wiki/Q980509","display_name":"Embedding","level":2,"score":0.4332045912742615},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4242990016937256},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.4182592034339905},{"id":"https://openalex.org/C62611344","wikidata":"https://www.wikidata.org/wiki/Q1062658","display_name":"Node (physics)","level":2,"score":0.41823622584342957},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.39709219336509705},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.3416286110877991},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.1356053352355957},{"id":"https://openalex.org/C66938386","wikidata":"https://www.wikidata.org/wiki/Q633538","display_name":"Structural engineering","level":1,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1186/s12911-024-02662-5","is_oa":true,"landing_page_url":"http://dx.doi.org/10.1186/s12911-024-02662-5","pdf_url":"https://link.springer.com/content/pdf/10.1186/s12911-024-02662-5.pdf","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},{"id":"pmid:39289714","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39289714","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC medical informatics and decision making","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11409592","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11409592","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11409592/pdf/12911_2024_Article_2662.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Med Inform Decis Mak","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:32c87d99cfdd496bb978027e4ff59d12","is_oa":true,"landing_page_url":"https://doaj.org/article/32c87d99cfdd496bb978027e4ff59d12","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Medical Informatics and Decision Making, Vol 24, Iss S5, Pp 1-11 (2024)","raw_type":"article"},{"id":"pmh:oai:osti.gov:2447021","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/2447021","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:osti.gov:2447342","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/2447342","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null}],"best_oa_location":{"id":"doi:10.1186/s12911-024-02662-5","is_oa":true,"landing_page_url":"http://dx.doi.org/10.1186/s12911-024-02662-5","pdf_url":"https://link.springer.com/content/pdf/10.1186/s12911-024-02662-5.pdf","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4","score":0.7599999904632568}],"awards":[{"id":"https://openalex.org/G2526390019","display_name":null,"funder_award_id":"P30 CA177558","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G3232922872","display_name":null,"funder_award_id":"17-SC-20-SC","funder_id":"https://openalex.org/F4320332369","funder_display_name":"National Nuclear Security Administration"},{"id":"https://openalex.org/G6859237865","display_name":null,"funder_award_id":"17-SC-20-SC","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G8253304997","display_name":null,"funder_award_id":"17-SC-20-SC","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"}],"funders":[{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320332359","display_name":"Office of Science","ror":"https://ror.org/00mmn6b08"},{"id":"https://openalex.org/F4320332369","display_name":"National Nuclear Security Administration","ror":"https://ror.org/03sk1we31"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4402602186.pdf","grobid_xml":"https://content.openalex.org/works/W4402602186.grobid-xml"},"referenced_works_count":39,"referenced_works":["https://openalex.org/W45867036","https://openalex.org/W1832693441","https://openalex.org/W1972949070","https://openalex.org/W1981038351","https://openalex.org/W1981276685","https://openalex.org/W2071128523","https://openalex.org/W2076424959","https://openalex.org/W2094937180","https://openalex.org/W2097308346","https://openalex.org/W2105700959","https://openalex.org/W2141696759","https://openalex.org/W2242464395","https://openalex.org/W2295124130","https://openalex.org/W2592541154","https://openalex.org/W2607136846","https://openalex.org/W2611254939","https://openalex.org/W2768377508","https://openalex.org/W2803831897","https://openalex.org/W2907492528","https://openalex.org/W2918342466","https://openalex.org/W2934708523","https://openalex.org/W2951071083","https://openalex.org/W2960799835","https://openalex.org/W2962946486","https://openalex.org/W2970183009","https://openalex.org/W2970971581","https://openalex.org/W2981133974","https://openalex.org/W2981806891","https://openalex.org/W2985301765","https://openalex.org/W3007080761","https://openalex.org/W3011667710","https://openalex.org/W3030286867","https://openalex.org/W3098276446","https://openalex.org/W4210257598","https://openalex.org/W4226176421","https://openalex.org/W6600213211","https://openalex.org/W6601955380","https://openalex.org/W6602924220","https://openalex.org/W6736685754"],"related_works":["https://openalex.org/W2081900870","https://openalex.org/W2978729728","https://openalex.org/W4293226380","https://openalex.org/W2037549926","https://openalex.org/W4288966080","https://openalex.org/W2345479200","https://openalex.org/W2183306018","https://openalex.org/W2849310602","https://openalex.org/W3006008237","https://openalex.org/W4321487865"],"abstract_inverted_index":{"BACKGROUND:":[0],"Applying":[1],"graph":[2],"convolutional":[3,149],"networks":[4],"(GCN)":[5],"to":[6,23,99,162,224],"the":[7,35,41,87,91,96,100,111,126,131,147,157,166,180,215],"classification":[8,37],"of":[9,28,47,102,130,136,220],"free-form":[10],"natural":[11,31],"language":[12,32],"texts":[13],"leveraged":[14],"by":[15,78],"graph-of-words":[16],"features":[17],"(TextGCN)":[18],"was":[19,144],"studied":[20],"and":[21,50,53,76,83,121,138],"confirmed":[22],"be":[24],"an":[25],"effective":[26],"means":[27],"describing":[29],"complex":[30],"texts.":[33],"However,":[34],"text":[36],"models":[38,133],"based":[39,178],"on":[40,179],"TextGCN":[42],"possess":[43],"weaknesses":[44],"in":[45,134,195],"terms":[46,135],"memory":[48],"consumption":[49],"model":[51,89,98,159],"dissemination":[52],"distribution.":[54],"In":[55],"this":[56,213],"paper,":[57],"we":[58],"present":[59],"a":[60,67,185],"fast":[61],"message":[62,70],"passing":[63,71],"network":[64,151],"(FastMPN),":[65],"implementing":[66],"GCN":[68,88],"with":[69,146,191],"architecture":[72],"that":[73,156,172,211],"provides":[74],"versatility":[75],"flexibility":[77],"allowing":[79],"trainable":[80],"node":[81],"embedding":[82],"edge":[84],"weights,":[85],"helping":[86],"find":[90],"better":[92,164],"solution.":[93],"We":[94,124],"applied":[95],"FastMPN":[97,132,158,174],"task":[101,128,217],"clinical":[103,127,216],"information":[104,221],"extraction":[105,222],"from":[106,226],"cancer":[107,227],"pathology":[108,228],"reports,":[109],"extracting":[110],"following":[112],"six":[113],"properties:":[114],"main":[115],"site,":[116],"subsite,":[117],"laterality,":[118],"histology,":[119],"behavior,":[120],"grade.":[122],"RESULTS:":[123],"evaluated":[125],"performance":[129,218],"micro-":[137],"macro-averaged":[139],"F1":[140],"scores.":[141],"A":[142],"comparison":[143],"performed":[145],"multi-task":[148],"neural":[150],"(MT-CNN)":[152],"model.":[153],"Results":[154],"show":[155],"is":[160,177],"equivalent":[161],"or":[163],"than":[165,197],"MT-CNN.":[167],"CONCLUSIONS:":[168],"Our":[169,208],"implementation":[170],"revealed":[171],"our":[173],"model,":[175],"which":[176],"PyTorch":[181],"platform,":[182],"can":[183],"train":[184],"large":[186],"corpus":[187],"(667,290":[188],"training":[189],"samples)":[190],"202,373":[192],"unique":[193],"words":[194],"less":[196],"3":[198],"minutes":[199],"per":[200],"epoch":[201],"using":[202,212],"one":[203],"NVIDIA":[204],"V100":[205],"hardware":[206],"accelerator.":[207],"experiments":[209],"demonstrated":[210],"implementation,":[214],"scores":[219],"related":[223],"tumors":[225],"reports":[229],"were":[230],"highly":[231],"competitive.":[232]},"counts_by_year":[{"year":2026,"cited_by_count":1}],"updated_date":"2026-06-24T13:16:06.693445","created_date":"2025-10-10T00:00:00"}
