{"id":"https://openalex.org/W4401076218","doi":"https://doi.org/10.1186/s12911-024-02600-5","title":"Transformer models in biomedicine","display_name":"Transformer models in biomedicine","publication_year":2024,"publication_date":"2024-07-29","ids":{"openalex":"https://openalex.org/W4401076218","doi":"https://doi.org/10.1186/s12911-024-02600-5","pmid":"https://pubmed.ncbi.nlm.nih.gov/39075407"},"language":"en","primary_location":{"id":"doi:10.1186/s12911-024-02600-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-024-02600-5","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/counter/pdf/10.1186/s12911-024-02600-5","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcmedinformdecismak.biomedcentral.com/counter/pdf/10.1186/s12911-024-02600-5","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5090087547","display_name":"Sumit Madan","orcid":"https://orcid.org/0000-0001-9970-4144"},"institutions":[{"id":"https://openalex.org/I4210098248","display_name":"Fraunhofer Institute for Algorithms and Scientific Computing","ror":"https://ror.org/00trw9c49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210098248","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Sumit Madan","raw_affiliation_strings":["Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, Sankt Augustin, 53757, Germany. sumit.madan@scai.fraunhofer.de","Institute of Computer Science, University of Bonn, Bonn, 53115, Germany. sumit.madan@scai.fraunhofer.de","Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, Sankt Augustin, 53757, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, Sankt Augustin, 53757, Germany. sumit.madan@scai.fraunhofer.de","institution_ids":[]},{"raw_affiliation_string":"Institute of Computer Science, University of Bonn, Bonn, 53115, Germany. sumit.madan@scai.fraunhofer.de","institution_ids":[]},{"raw_affiliation_string":"Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, Sankt Augustin, 53757, Germany","institution_ids":["https://openalex.org/I4210098248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074621164","display_name":"Manuel Lentzen","orcid":"https://orcid.org/0000-0002-1344-4132"},"institutions":[{"id":"https://openalex.org/I135140700","display_name":"University of Bonn","ror":"https://ror.org/041nas322","country_code":"DE","type":"education","lineage":["https://openalex.org/I135140700"]},{"id":"https://openalex.org/I4210098248","display_name":"Fraunhofer Institute for Algorithms and Scientific Computing","ror":"https://ror.org/00trw9c49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210098248","https://openalex.org/I4923324"]},{"id":"https://openalex.org/I4210164149","display_name":"Bonn Aachen International Center for Information Technology","ror":"https://ror.org/054zhq066","country_code":"DE","type":"facility","lineage":["https://openalex.org/I135140700","https://openalex.org/I155417937","https://openalex.org/I4210164149","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Manuel Lentzen","raw_affiliation_strings":["Bonn-Aachen International Center for Information Technology (B-IT), University of Bonn, Bonn, 53115, Germany","Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, Sankt Augustin, 53757, Germany"],"affiliations":[{"raw_affiliation_string":"Bonn-Aachen International Center for Information Technology (B-IT), University of Bonn, Bonn, 53115, Germany","institution_ids":["https://openalex.org/I4210164149","https://openalex.org/I135140700"]},{"raw_affiliation_string":"Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, Sankt Augustin, 53757, Germany","institution_ids":["https://openalex.org/I4210098248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017173710","display_name":"Johannes Brandt","orcid":null},"institutions":[{"id":"https://openalex.org/I2802619606","display_name":"Klinikum rechts der Isar","ror":"https://ror.org/04jc43x05","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I2802619606","https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Johannes Brandt","raw_affiliation_strings":["School of Medicine, Klinikum Rechts der Isar, Technical University Munich, Munich, Germany"],"affiliations":[{"raw_affiliation_string":"School of Medicine, Klinikum Rechts der Isar, Technical University Munich, Munich, Germany","institution_ids":["https://openalex.org/I2802619606"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006461848","display_name":"Daniel Rueckert","orcid":"https://orcid.org/0000-0002-5683-5889"},"institutions":[{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]},{"id":"https://openalex.org/I2802619606","display_name":"Klinikum rechts der Isar","ror":"https://ror.org/04jc43x05","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I2802619606","https://openalex.org/I62916508"]},{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE","GB"],"is_corresponding":false,"raw_author_name":"Daniel Rueckert","raw_affiliation_strings":["Department of Computing, Imperial College London, London, UK","School of Computation, Information and Technology, Technical University Munich, Munich, Germany","School of Medicine, Klinikum Rechts der Isar, Technical University Munich, Munich, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Computing, Imperial College London, London, UK","institution_ids":["https://openalex.org/I47508984"]},{"raw_affiliation_string":"School of Computation, Information and Technology, Technical University Munich, Munich, Germany","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"School of Medicine, Klinikum Rechts der Isar, Technical University Munich, Munich, Germany","institution_ids":["https://openalex.org/I2802619606"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003139478","display_name":"Martin Hofmann\u2010Apitius","orcid":"https://orcid.org/0000-0001-9012-6720"},"institutions":[{"id":"https://openalex.org/I4210098248","display_name":"Fraunhofer Institute for Algorithms and Scientific Computing","ror":"https://ror.org/00trw9c49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210098248","https://openalex.org/I4923324"]},{"id":"https://openalex.org/I135140700","display_name":"University of Bonn","ror":"https://ror.org/041nas322","country_code":"DE","type":"education","lineage":["https://openalex.org/I135140700"]},{"id":"https://openalex.org/I4210164149","display_name":"Bonn Aachen International Center for Information Technology","ror":"https://ror.org/054zhq066","country_code":"DE","type":"facility","lineage":["https://openalex.org/I135140700","https://openalex.org/I155417937","https://openalex.org/I4210164149","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Martin Hofmann-Apitius","raw_affiliation_strings":["Bonn-Aachen International Center for Information Technology (B-IT), University of Bonn, Bonn, 53115, Germany","Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, Sankt Augustin, 53757, Germany"],"affiliations":[{"raw_affiliation_string":"Bonn-Aachen International Center for Information Technology (B-IT), University of Bonn, Bonn, 53115, Germany","institution_ids":["https://openalex.org/I4210164149","https://openalex.org/I135140700"]},{"raw_affiliation_string":"Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, Sankt Augustin, 53757, Germany","institution_ids":["https://openalex.org/I4210098248"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5054001409","display_name":"Holger Fr\u00f6hlich","orcid":"https://orcid.org/0000-0002-5328-1243"},"institutions":[{"id":"https://openalex.org/I4210098248","display_name":"Fraunhofer Institute for Algorithms and Scientific Computing","ror":"https://ror.org/00trw9c49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210098248","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Holger Fr\u00f6hlich","raw_affiliation_strings":["Bonn-Aachen International Center for Information Technology (B-IT), University of Bonn, Bonn, 53115, Germany. holger.froehlich@scai.fraunhofer.de","Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, Sankt Augustin, 53757, Germany. holger.froehlich@scai.fraunhofer.de","Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, Sankt Augustin, 53757, Germany"],"affiliations":[{"raw_affiliation_string":"Bonn-Aachen International Center for Information Technology (B-IT), University of Bonn, Bonn, 53115, Germany. holger.froehlich@scai.fraunhofer.de","institution_ids":[]},{"raw_affiliation_string":"Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, Sankt Augustin, 53757, Germany. holger.froehlich@scai.fraunhofer.de","institution_ids":[]},{"raw_affiliation_string":"Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, Sankt Augustin, 53757, Germany","institution_ids":["https://openalex.org/I4210098248"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5090087547"],"corresponding_institution_ids":["https://openalex.org/I4210098248"],"apc_list":{"value":1570,"currency":"GBP","value_usd":1925},"apc_paid":{"value":1570,"currency":"GBP","value_usd":1925},"fwci":24.7666,"has_fulltext":true,"cited_by_count":73,"citation_normalized_percentile":{"value":0.99673326,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"24","issue":"1","first_page":"214","last_page":"214"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9948999881744385,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biomedicine","display_name":"Biomedicine","score":0.8213569521903992},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7377947568893433},{"id":"https://openalex.org/keywords/transformer","display_name":"Transformer","score":0.6835591793060303},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6047739386558533},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.48851263523101807},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4725501239299774},{"id":"https://openalex.org/keywords/health-informatics","display_name":"Health informatics","score":0.4583240747451782},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.45317700505256653},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.13801202178001404},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.11906519532203674},{"id":"https://openalex.org/keywords/health-care","display_name":"Health care","score":0.11173343658447266}],"concepts":[{"id":"https://openalex.org/C66782513","wikidata":"https://www.wikidata.org/wiki/Q864601","display_name":"Biomedicine","level":2,"score":0.8213569521903992},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7377947568893433},{"id":"https://openalex.org/C66322947","wikidata":"https://www.wikidata.org/wiki/Q11658","display_name":"Transformer","level":3,"score":0.6835591793060303},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6047739386558533},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.48851263523101807},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4725501239299774},{"id":"https://openalex.org/C145642194","wikidata":"https://www.wikidata.org/wiki/Q870895","display_name":"Health informatics","level":3,"score":0.4583240747451782},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.45317700505256653},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.13801202178001404},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.11906519532203674},{"id":"https://openalex.org/C160735492","wikidata":"https://www.wikidata.org/wiki/Q31207","display_name":"Health care","level":2,"score":0.11173343658447266},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C165801399","wikidata":"https://www.wikidata.org/wiki/Q25428","display_name":"Voltage","level":2,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C50522688","wikidata":"https://www.wikidata.org/wiki/Q189833","display_name":"Economic growth","level":1,"score":0.0},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1186/s12911-024-02600-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-024-02600-5","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/counter/pdf/10.1186/s12911-024-02600-5","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},{"id":"pmid:39075407","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39075407","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC medical informatics and decision making","raw_type":null},{"id":"pmh:oai:frl.publisso.de:frl:6524180","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11287876","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11287876/pdf/12911_2024_Article_2600.pdf","source":{"id":"https://openalex.org/S4377196269","display_name":"PUBLISSO (German National Library of Medicine)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210112663","host_organization_name":"ZB MED - Information Centre for Life Sciences","host_organization_lineage":["https://openalex.org/I4210112663"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://lobid.org/resources/99370673400706441#!, 24(1):214","raw_type":"Zeitschriftenartikel"},{"id":"pmh:oai:doaj.org/article:946beefb38ca40a88dd728fcc6a96822","is_oa":true,"landing_page_url":"https://doaj.org/article/946beefb38ca40a88dd728fcc6a96822","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Medical Informatics and Decision Making, Vol 24, Iss 1, Pp 1-22 (2024)","raw_type":"article"},{"id":"pmh:oai:mediatum.ub.tum.de:node/1752929","is_oa":false,"landing_page_url":"https://mediatum.ub.tum.de/1752929","pdf_url":null,"source":{"id":"https://openalex.org/S4377196330","display_name":"mediaTUM  (Technical University of Munich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I62916508","host_organization_name":"Technical University of Munich","host_organization_lineage":["https://openalex.org/I62916508"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"},{"id":"pmh:oai:publica.fraunhofer.de:publica/478308","is_oa":false,"landing_page_url":"https://publica.fraunhofer.de/handle/publica/478308","pdf_url":null,"source":{"id":"https://openalex.org/S4306400318","display_name":"Fraunhofer-Publica (Fraunhofer-Gesellschaft)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4923324","host_organization_name":"Fraunhofer-Gesellschaft","host_organization_lineage":["https://openalex.org/I4923324"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"review"}],"best_oa_location":{"id":"doi:10.1186/s12911-024-02600-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-024-02600-5","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/counter/pdf/10.1186/s12911-024-02600-5","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Quality Education","score":0.7300000190734863,"id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4401076218.pdf"},"referenced_works_count":207,"referenced_works":["https://openalex.org/W47135330","https://openalex.org/W1583837637","https://openalex.org/W2116360511","https://openalex.org/W2163605009","https://openalex.org/W2396881363","https://openalex.org/W2559770535","https://openalex.org/W2588735960","https://openalex.org/W2602018030","https://openalex.org/W2610332124","https://openalex.org/W2618530766","https://openalex.org/W2736958521","https://openalex.org/W2911489562","https://openalex.org/W2912083425","https://openalex.org/W2913954081","https://openalex.org/W2951433247","https://openalex.org/W2952239877","https://openalex.org/W2963716420","https://openalex.org/W2965570621","https://openalex.org/W2978511610","https://openalex.org/W2981627619","https://openalex.org/W2986341143","https://openalex.org/W2999044305","https://openalex.org/W3012137864","https://openalex.org/W3015173574","https://openalex.org/W3017637887","https://openalex.org/W3027982260","https://openalex.org/W3034368386","https://openalex.org/W3037063616","https://openalex.org/W3046375318","https://openalex.org/W3047309846","https://openalex.org/W3080098168","https://openalex.org/W3085139254","https://openalex.org/W3087175475","https://openalex.org/W3087291937","https://openalex.org/W3088624469","https://openalex.org/W3089168780","https://openalex.org/W3089760472","https://openalex.org/W3091546937","https://openalex.org/W3095092693","https://openalex.org/W3096498527","https://openalex.org/W3096508121","https://openalex.org/W3097293074","https://openalex.org/W3098085362","https://openalex.org/W3099440025","https://openalex.org/W3099750501","https://openalex.org/W3102345918","https://openalex.org/W3104578551","https://openalex.org/W3105753785","https://openalex.org/W3112376646","https://openalex.org/W3113177135","https://openalex.org/W3113917069","https://openalex.org/W3120223152","https://openalex.org/W3127238141","https://openalex.org/W3128090102","https://openalex.org/W3133458480","https://openalex.org/W3133650345","https://openalex.org/W3135538032","https://openalex.org/W3138154797","https://openalex.org/W3145725122","https://openalex.org/W3146944767","https://openalex.org/W3154065069","https://openalex.org/W3157876196","https://openalex.org/W3160137267","https://openalex.org/W3166272013","https://openalex.org/W3166508187","https://openalex.org/W3168547639","https://openalex.org/W3168997536","https://openalex.org/W3170419072","https://openalex.org/W3175809342","https://openalex.org/W3177500196","https://openalex.org/W3177828909","https://openalex.org/W3179963059","https://openalex.org/W3181946646","https://openalex.org/W3184133963","https://openalex.org/W3186179742","https://openalex.org/W3186612807","https://openalex.org/W3187128591","https://openalex.org/W3189279073","https://openalex.org/W3195976550","https://openalex.org/W3196962552","https://openalex.org/W3199613405","https://openalex.org/W3202105508","https://openalex.org/W3203588026","https://openalex.org/W3204614423","https://openalex.org/W3205235328","https://openalex.org/W3207549851","https://openalex.org/W3207752633","https://openalex.org/W3207902211","https://openalex.org/W3211983116","https://openalex.org/W3212340323","https://openalex.org/W3212619984","https://openalex.org/W3212640459","https://openalex.org/W3212759784","https://openalex.org/W3216045725","https://openalex.org/W3217728966","https://openalex.org/W4200049245","https://openalex.org/W4200135473","https://openalex.org/W4200427693","https://openalex.org/W4205192056","https://openalex.org/W4205773061","https://openalex.org/W4205989901","https://openalex.org/W4206087583","https://openalex.org/W4206419503","https://openalex.org/W4206948363","https://openalex.org/W4206950245","https://openalex.org/W4207012249","https://openalex.org/W4212837331","https://openalex.org/W4213274817","https://openalex.org/W4213318302","https://openalex.org/W4220967417","https://openalex.org/W4220991280","https://openalex.org/W4221142212","https://openalex.org/W4221143384","https://openalex.org/W4221145109","https://openalex.org/W4221167913","https://openalex.org/W4223644783","https://openalex.org/W4224216771","https://openalex.org/W4224325974","https://openalex.org/W4225912841","https://openalex.org/W4226094768","https://openalex.org/W4234552385","https://openalex.org/W4236865533","https://openalex.org/W4238371447","https://openalex.org/W4238634189","https://openalex.org/W4241901867","https://openalex.org/W4246708511","https://openalex.org/W4248735723","https://openalex.org/W4249905395","https://openalex.org/W4255627255","https://openalex.org/W4280511680","https://openalex.org/W4280617006","https://openalex.org/W4281561556","https://openalex.org/W4281630638","https://openalex.org/W4281853941","https://openalex.org/W4281922383","https://openalex.org/W4283159491","https://openalex.org/W4283168161","https://openalex.org/W4283215538","https://openalex.org/W4283325105","https://openalex.org/W4283378513","https://openalex.org/W4283727542","https://openalex.org/W4283733033","https://openalex.org/W4285116827","https://openalex.org/W4285212985","https://openalex.org/W4285249657","https://openalex.org/W4285266620","https://openalex.org/W4286252375","https://openalex.org/W4286470556","https://openalex.org/W4286500588","https://openalex.org/W4287812619","https://openalex.org/W4287828392","https://openalex.org/W4287854933","https://openalex.org/W4287854971","https://openalex.org/W4287992009","https://openalex.org/W4288066876","https://openalex.org/W4288283362","https://openalex.org/W4288950918","https://openalex.org/W4289522227","https://openalex.org/W4290546426","https://openalex.org/W4292199287","https://openalex.org/W4292265045","https://openalex.org/W4294975187","https://openalex.org/W4294975305","https://openalex.org/W4295430543","https://openalex.org/W4295900303","https://openalex.org/W4295951577","https://openalex.org/W4296151531","https://openalex.org/W4296413616","https://openalex.org/W4297243351","https://openalex.org/W4297253404","https://openalex.org/W4303628775","https://openalex.org/W4303674522","https://openalex.org/W4306879453","https://openalex.org/W4307498511","https://openalex.org/W4307717106","https://openalex.org/W4308436127","https://openalex.org/W4308760226","https://openalex.org/W4309111272","https://openalex.org/W4310645210","https://openalex.org/W4311642023","https://openalex.org/W4312197262","https://openalex.org/W4312220150","https://openalex.org/W4312464924","https://openalex.org/W4317671431","https://openalex.org/W4322718191","https://openalex.org/W4322810891","https://openalex.org/W4327550249","https://openalex.org/W4327810158","https://openalex.org/W4381715962","https://openalex.org/W4384918448","https://openalex.org/W4388767362","https://openalex.org/W4388776291","https://openalex.org/W4390822127","https://openalex.org/W4391345489","https://openalex.org/W4391670874","https://openalex.org/W4394647257","https://openalex.org/W6600005967","https://openalex.org/W6600424091","https://openalex.org/W6600466347","https://openalex.org/W6600882715","https://openalex.org/W6793544515","https://openalex.org/W6802033083","https://openalex.org/W6805081885","https://openalex.org/W6843484173","https://openalex.org/W6846896813","https://openalex.org/W6893997454","https://openalex.org/W6903655558"],"related_works":["https://openalex.org/W2017899917","https://openalex.org/W2080571363","https://openalex.org/W2481322495","https://openalex.org/W2898682754","https://openalex.org/W2889841093","https://openalex.org/W2151082141","https://openalex.org/W2365236913","https://openalex.org/W3194374240","https://openalex.org/W2993861175","https://openalex.org/W2096756458"],"abstract_inverted_index":{"Deep":[0],"neural":[1],"networks":[2],"(DNN)":[3],"have":[4,65],"fundamentally":[5],"revolutionized":[6],"the":[7,25,79,87,127,135],"artificial":[8],"intelligence":[9],"(AI)":[10],"field.":[11],"The":[12],"transformer":[13,92],"model":[14],"is":[15],"a":[16],"type":[17],"of":[18,42,91,129,139],"DNN":[19],"that":[20,123],"was":[21],"originally":[22],"used":[23],"for":[24,38,94],"natural":[26],"language":[27],"processing":[28,39],"tasks":[29],"and":[30,35,48,63,68,89,109,137,142],"has":[31],"since":[32],"gained":[33],"more":[34,36],"attention":[37],"various":[40,74,96],"kinds":[41],"sequential":[43],"data,":[44,103,108],"including":[45],"biological":[46],"sequences":[47],"structured":[49],"electronic":[50],"health":[51],"records.":[52],"Along":[53],"with":[54],"this":[55,83],"development,":[56],"transformer-based":[57,130],"models":[58,93],"such":[59,99],"as":[60,100,112,114],"BioBERT,":[61],"MedBERT,":[62],"MassGenie":[64],"been":[66],"trained":[67],"deployed":[69],"by":[70],"researchers":[71],"to":[72,125],"answer":[73],"scientific":[75],"questions":[76],"originating":[77],"in":[78],"biomedical":[80,101,110],"domain.":[81],"In":[82],"paper,":[84],"we":[85,117,133],"review":[86],"development":[88],"application":[90],"analyzing":[95],"biomedical-related":[97],"datasets":[98],"textual":[102],"protein":[104],"sequences,":[105],"medical":[106],"structured-longitudinal":[107],"images":[111],"well":[113],"graphs.":[115],"Also,":[116],"look":[118],"at":[119],"explainable":[120],"AI":[121],"strategies":[122],"help":[124],"comprehend":[126],"predictions":[128],"models.":[131],"Finally,":[132],"discuss":[134],"limitations":[136],"challenges":[138],"current":[140],"models,":[141],"point":[143],"out":[144],"emerging":[145],"novel":[146],"research":[147],"directions.":[148]},"counts_by_year":[{"year":2026,"cited_by_count":12},{"year":2025,"cited_by_count":59},{"year":2024,"cited_by_count":2}],"updated_date":"2026-04-13T07:58:08.660418","created_date":"2025-10-10T00:00:00"}
