{"id":"https://openalex.org/W4394575124","doi":"https://doi.org/10.1186/s12911-024-02491-6","title":"Machine learning pipeline to analyze clinical and proteomics data: experiences on a prostate cancer case","display_name":"Machine learning pipeline to analyze clinical and proteomics data: experiences on a prostate cancer case","publication_year":2024,"publication_date":"2024-04-08","ids":{"openalex":"https://openalex.org/W4394575124","doi":"https://doi.org/10.1186/s12911-024-02491-6","pmid":"https://pubmed.ncbi.nlm.nih.gov/38584282"},"language":"en","primary_location":{"id":"doi:10.1186/s12911-024-02491-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-024-02491-6","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/counter/pdf/10.1186/s12911-024-02491-6","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcmedinformdecismak.biomedcentral.com/counter/pdf/10.1186/s12911-024-02491-6","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5077594815","display_name":"Patrizia Vizza","orcid":"https://orcid.org/0000-0002-0014-478X"},"institutions":[{"id":"https://openalex.org/I36443711","display_name":"Magna Graecia University","ror":"https://ror.org/0530bdk91","country_code":"IT","type":"education","lineage":["https://openalex.org/I36443711"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Patrizia Vizza","raw_affiliation_strings":["Department of Surgical and Medical Sciences, Magna Gr\u00e6cia University, 88100, Catanzaro, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Surgical and Medical Sciences, Magna Gr\u00e6cia University, 88100, Catanzaro, Italy","institution_ids":["https://openalex.org/I36443711"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033939380","display_name":"Federica Aracri","orcid":null},"institutions":[{"id":"https://openalex.org/I36443711","display_name":"Magna Graecia University","ror":"https://ror.org/0530bdk91","country_code":"IT","type":"education","lineage":["https://openalex.org/I36443711"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Federica Aracri","raw_affiliation_strings":["Department of Surgical and Medical Sciences, Magna Gr\u00e6cia University, 88100, Catanzaro, Italy. federica.aracri@unicz.it","Department of Surgical and Medical Sciences, Magna Gr\u00e6cia University, 88100, Catanzaro, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Surgical and Medical Sciences, Magna Gr\u00e6cia University, 88100, Catanzaro, Italy. federica.aracri@unicz.it","institution_ids":["https://openalex.org/I36443711"]},{"raw_affiliation_string":"Department of Surgical and Medical Sciences, Magna Gr\u00e6cia University, 88100, Catanzaro, Italy","institution_ids":["https://openalex.org/I36443711"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037399554","display_name":"Pietro Hiram Guzzi","orcid":"https://orcid.org/0000-0001-5542-2997"},"institutions":[{"id":"https://openalex.org/I36443711","display_name":"Magna Graecia University","ror":"https://ror.org/0530bdk91","country_code":"IT","type":"education","lineage":["https://openalex.org/I36443711"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Pietro Hiram Guzzi","raw_affiliation_strings":["Department of Surgical and Medical Sciences, Magna Gr\u00e6cia University, 88100, Catanzaro, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Surgical and Medical Sciences, Magna Gr\u00e6cia University, 88100, Catanzaro, Italy","institution_ids":["https://openalex.org/I36443711"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000717123","display_name":"Marco Gaspari","orcid":"https://orcid.org/0000-0002-5411-8800"},"institutions":[{"id":"https://openalex.org/I36443711","display_name":"Magna Graecia University","ror":"https://ror.org/0530bdk91","country_code":"IT","type":"education","lineage":["https://openalex.org/I36443711"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Marco Gaspari","raw_affiliation_strings":["Department of Experimental and Clinical Medicine, Magna Gr\u00e6cia University, 88100, Catanzaro, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Experimental and Clinical Medicine, Magna Gr\u00e6cia University, 88100, Catanzaro, Italy","institution_ids":["https://openalex.org/I36443711"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027369094","display_name":"Pierangelo Veltri","orcid":"https://orcid.org/0000-0003-2494-0294"},"institutions":[{"id":"https://openalex.org/I45204951","display_name":"University of Calabria","ror":"https://ror.org/02rc97e94","country_code":"IT","type":"education","lineage":["https://openalex.org/I45204951"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Pierangelo Veltri","raw_affiliation_strings":["Department of Computers, Modeling, Electronics and Systems Engineering, University of Calabria, 87036, Rende, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Computers, Modeling, Electronics and Systems Engineering, University of Calabria, 87036, Rende, Italy","institution_ids":["https://openalex.org/I45204951"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5087181065","display_name":"Giuseppe Tradigo","orcid":"https://orcid.org/0000-0002-1367-8676"},"institutions":[{"id":"https://openalex.org/I167322064","display_name":"Universit\u00e0 degli Studi eCampus","ror":"https://ror.org/006maft66","country_code":"IT","type":"education","lineage":["https://openalex.org/I167322064"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Giuseppe Tradigo","raw_affiliation_strings":["Department of Theoretical and Applied Sciences, eCampus University, 22060, Novedrate, CO, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Theoretical and Applied Sciences, eCampus University, 22060, Novedrate, CO, Italy","institution_ids":["https://openalex.org/I167322064"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5077594815"],"corresponding_institution_ids":["https://openalex.org/I36443711"],"apc_list":{"value":1570,"currency":"GBP","value_usd":1925},"apc_paid":{"value":1570,"currency":"GBP","value_usd":1925},"fwci":4.3402,"has_fulltext":true,"cited_by_count":18,"citation_normalized_percentile":{"value":0.95418492,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"24","issue":"1","first_page":"93","last_page":"93"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10683","display_name":"Mass Spectrometry Techniques and Applications","score":0.9901000261306763,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9815999865531921,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.7439813613891602},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6850137114524841},{"id":"https://openalex.org/keywords/feature-selection","display_name":"Feature selection","score":0.5876036286354065},{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.5749721527099609},{"id":"https://openalex.org/keywords/prostate-cancer","display_name":"Prostate cancer","score":0.4901669919490814},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4415794014930725},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.375076562166214},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3709011673927307},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.3020206689834595},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.17941242456436157},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.1480875015258789},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.06555813550949097}],"concepts":[{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.7439813613891602},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6850137114524841},{"id":"https://openalex.org/C148483581","wikidata":"https://www.wikidata.org/wiki/Q446488","display_name":"Feature selection","level":2,"score":0.5876036286354065},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.5749721527099609},{"id":"https://openalex.org/C2780192828","wikidata":"https://www.wikidata.org/wiki/Q181257","display_name":"Prostate cancer","level":3,"score":0.4901669919490814},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4415794014930725},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.375076562166214},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3709011673927307},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.3020206689834595},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.17941242456436157},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.1480875015258789},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.06555813550949097},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011467","descriptor_name":"Prostate","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011467","descriptor_name":"Prostate","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011467","descriptor_name":"Prostate","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011467","descriptor_name":"Prostate","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011470","descriptor_name":"Prostatic Hyperplasia","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011470","descriptor_name":"Prostatic Hyperplasia","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011470","descriptor_name":"Prostatic Hyperplasia","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011470","descriptor_name":"Prostatic Hyperplasia","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/s12911-024-02491-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-024-02491-6","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/counter/pdf/10.1186/s12911-024-02491-6","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},{"id":"pmid:38584282","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38584282","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC medical informatics and decision making","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11000316","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11000316","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11000316/pdf/12911_2024_Article_2491.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Med Inform Decis Mak","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:08e4a3362c47407fbc0cc9ff73edd675","is_oa":true,"landing_page_url":"https://doaj.org/article/08e4a3362c47407fbc0cc9ff73edd675","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Medical Informatics and Decision Making, Vol 24, Iss 1, Pp 1-12 (2024)","raw_type":"article"},{"id":"pmh:oai:iris.uniecampus.it:11389/62557","is_oa":false,"landing_page_url":"https://hdl.handle.net/11389/62557","pdf_url":null,"source":{"id":"https://openalex.org/S4306400077","display_name":"IRIS eCampus Telematic University (Universit\u00e0 degli Studi eCampus)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I167322064","host_organization_name":"Universit\u00e0 degli Studi eCampus","host_organization_lineage":["https://openalex.org/I167322064"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1186/s12911-024-02491-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-024-02491-6","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/counter/pdf/10.1186/s12911-024-02491-6","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.41999998688697815,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4394575124.pdf"},"referenced_works_count":50,"referenced_works":["https://openalex.org/W223385549","https://openalex.org/W387672264","https://openalex.org/W1531237901","https://openalex.org/W1975916099","https://openalex.org/W1979620241","https://openalex.org/W1989861509","https://openalex.org/W2021707569","https://openalex.org/W2083479280","https://openalex.org/W2084613253","https://openalex.org/W2090611690","https://openalex.org/W2110571546","https://openalex.org/W2164959040","https://openalex.org/W2167101736","https://openalex.org/W2167185242","https://openalex.org/W2172300860","https://openalex.org/W2403294695","https://openalex.org/W2417370769","https://openalex.org/W2567080747","https://openalex.org/W2739220786","https://openalex.org/W2761163030","https://openalex.org/W2774474258","https://openalex.org/W2777698002","https://openalex.org/W2782842994","https://openalex.org/W2782888642","https://openalex.org/W2898528741","https://openalex.org/W2899717781","https://openalex.org/W2913997948","https://openalex.org/W2944954104","https://openalex.org/W2964834621","https://openalex.org/W3043363778","https://openalex.org/W3088330075","https://openalex.org/W3091860120","https://openalex.org/W3092217006","https://openalex.org/W3121485564","https://openalex.org/W3127253295","https://openalex.org/W3164246580","https://openalex.org/W3164936138","https://openalex.org/W3175073006","https://openalex.org/W3175467434","https://openalex.org/W3185621400","https://openalex.org/W3196234570","https://openalex.org/W3210447585","https://openalex.org/W4210598545","https://openalex.org/W4296244661","https://openalex.org/W4298621008","https://openalex.org/W4302293729","https://openalex.org/W4315482698","https://openalex.org/W4315490168","https://openalex.org/W4319439201","https://openalex.org/W4388845182"],"related_works":["https://openalex.org/W1488408180","https://openalex.org/W299695548","https://openalex.org/W2360290178","https://openalex.org/W3037187668","https://openalex.org/W3005464483","https://openalex.org/W415785311","https://openalex.org/W2384122898","https://openalex.org/W151774199","https://openalex.org/W4281885123","https://openalex.org/W3145527116"],"abstract_inverted_index":{"Proteomic-based":[0],"analysis":[1],"is":[2],"used":[3,50],"to":[4,22,34,38,51,69,88,125,206,257],"identify":[5,23,39,258],"biomarkers":[6,92],"in":[7,56,154,198,261,317],"blood":[8,91,168],"samples":[9,216],"and":[10,24,54,58,76,96,112,150,159,174,186,214,235,239,249,270,287,307],"tissues.":[11],"Data":[12],"produced":[13],"by":[14],"devices":[15],"such":[16,122],"as":[17],"mass":[18,35,151,211],"spectrometry":[19,36],"requires":[20],"platforms":[21],"quantify":[25],"proteins":[26],"(or":[27],"peptides).":[28],"Clinical":[29],"information":[30,209],"can":[31,48],"be":[32,49,314],"related":[33],"data":[37,79,153,166],"diseases":[40],"at":[41,74],"an":[42,240],"early":[43],"stage.":[44],"Machine":[45],"learning":[46,67],"techniques":[47,68],"support":[52],"physicians":[53],"biologists":[55],"studying":[57,75],"classifying":[59,77],"pathologies.":[60],"We":[61,116,136,221,299],"present":[62],"the":[63,118,146,155,262,267,273,301],"application":[64],"of":[65,120,148,157,219],"machine":[66],"define":[70],"a":[71,123,199],"pipeline":[72,85,101,124,163,190,255,302],"aimed":[73,205],"proteomics":[78,97],"enriched":[80],"using":[81],"clinical":[82,94,149,319],"information.":[83],"The":[84,99,162,188,276],"allows":[86],"users":[87],"relate":[89],"established":[90],"with":[93,229,243],"parameters":[95],"data.":[98],"proposed":[100],"entails":[102],"three":[103],"main":[104],"phases:":[105],"(i)":[106],"feature":[107,183],"selection,":[108,184],"(ii)":[109],"models":[110,114,181],"training,":[111],"(iii)":[113],"ensembling.":[115],"report":[117,137,222],"experience":[119],"applying":[121],"prostate-related":[126],"diseases.":[127],"Models":[128],"have":[129],"been":[130,192],"trained":[131],"on":[132,194,224,305],"several":[133],"biological":[134],"datasets.":[135],"experimental":[138],"results":[139,223,254],"about":[140],"two":[141,195,263],"datasets":[142,196,227,294],"that":[143,311],"result":[144],"from":[145,167,210,217],"integration":[147],"spectrometry-based":[152],"contexts":[156],"serum":[158,228,281],"urine":[160,175,215,241,288],"analysis.":[161],"receives":[164],"input":[165],"analytes,":[169],"tissue":[170],"samples,":[171,231,245],"proteomic":[172],"analysis,":[173],"biomarkers.":[176],"It":[177],"then":[178],"trains":[179],"different":[180],"for":[182,266,272,279],"classification":[185],"voting.":[187],"presented":[189],"has":[191],"applied":[193],"obtained":[197],"2":[200,271],"years":[201],"research":[202],"project":[203],"which":[204],"extract":[207],"hidden":[208],"spectrometry,":[212],"serum,":[213],"hundreds":[218],"patients.":[220,252],"analyzing":[225],"prostate":[226],"143":[230],"including":[232,246],"79":[233],"PCa":[234,248],"84":[236],"BPH":[237,251],"patients,":[238],"dataset":[242],"121":[244],"67":[247],"54":[250],"As":[253],"allowed":[256],"interesting":[259],"peptides":[260],"datasets,":[264],"6":[265],"first":[268],"one":[269],"second":[274],"one.":[275],"best":[277],"model":[278],"both":[280],"(AUC=0.87,":[282],"Accuracy=0.83,":[283,290],"F1=0.81,":[284],"Sensitivity=0.84,":[285],"Specificity=0.81)":[286],"(AUC=0.88,":[289],"F1=0.83,":[291],"Sensitivity=0.85,":[292],"Specificity=0.80)":[293],"showed":[295],"good":[296],"predictive":[297],"performances.":[298],"made":[300],"code":[303],"available":[304],"GitHub":[306],"we":[308],"are":[309],"confident":[310],"it":[312],"will":[313],"successfully":[315],"adopted":[316],"similar":[318],"setups.":[320]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":13},{"year":2024,"cited_by_count":3}],"updated_date":"2026-03-28T08:17:26.163206","created_date":"2025-10-10T00:00:00"}
