{"id":"https://openalex.org/W4391387740","doi":"https://doi.org/10.1186/s12911-024-02439-w","title":"An evaluation of GPT models for phenotype concept recognition","display_name":"An evaluation of GPT models for phenotype concept recognition","publication_year":2024,"publication_date":"2024-01-31","ids":{"openalex":"https://openalex.org/W4391387740","doi":"https://doi.org/10.1186/s12911-024-02439-w","pmid":"https://pubmed.ncbi.nlm.nih.gov/38297371"},"language":"en","primary_location":{"id":"doi:10.1186/s12911-024-02439-w","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-024-02439-w","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/counter/pdf/10.1186/s12911-024-02439-w","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcmedinformdecismak.biomedcentral.com/counter/pdf/10.1186/s12911-024-02439-w","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5011041769","display_name":"Tudor Groza","orcid":"https://orcid.org/0000-0003-2267-8333"},"institutions":[{"id":"https://openalex.org/I4387155440","display_name":"Perth Children's Hospital","ror":"https://ror.org/015zx6n37","country_code":null,"type":"healthcare","lineage":["https://openalex.org/I4387155440"]},{"id":"https://openalex.org/I2800419323","display_name":"Princess Margaret Hospital for Children","ror":"https://ror.org/04ec98z42","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I2799506148","https://openalex.org/I2800419323","https://openalex.org/I2800882159"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Tudor Groza","raw_affiliation_strings":["Rare Care Centre, Perth Children's Hospital, 15 Hospital Avenue, Nedlands, WA, 6009, Australia. tudor.groza@health.wa.gov.au","School of Electrical Engineering, Computing and Mathematical Sciences, Curtin University, Kent St, Bentley, WA, 6102, Australia. tudor.groza@health.wa.gov.au","SingHealth Duke-NUS Institute of Precision Medicine, 5 Hospital Drive Level 9, Singapore, 169609, Singapore. tudor.groza@health.wa.gov.au","Telethon Kids Institute, 15 Hospital Avenue, Nedlands, WA, 6009, Australia. tudor.groza@health.wa.gov.au","Rare Care Centre, Perth Children's Hospital, 15 Hospital Avenue, Nedlands, WA, 6009, Australia"],"affiliations":[{"raw_affiliation_string":"Rare Care Centre, Perth Children's Hospital, 15 Hospital Avenue, Nedlands, WA, 6009, Australia. tudor.groza@health.wa.gov.au","institution_ids":[]},{"raw_affiliation_string":"School of Electrical Engineering, Computing and Mathematical Sciences, Curtin University, Kent St, Bentley, WA, 6102, Australia. tudor.groza@health.wa.gov.au","institution_ids":[]},{"raw_affiliation_string":"SingHealth Duke-NUS Institute of Precision Medicine, 5 Hospital Drive Level 9, Singapore, 169609, Singapore. tudor.groza@health.wa.gov.au","institution_ids":[]},{"raw_affiliation_string":"Telethon Kids Institute, 15 Hospital Avenue, Nedlands, WA, 6009, Australia. tudor.groza@health.wa.gov.au","institution_ids":[]},{"raw_affiliation_string":"Rare Care Centre, Perth Children's Hospital, 15 Hospital Avenue, Nedlands, WA, 6009, Australia","institution_ids":["https://openalex.org/I2800419323","https://openalex.org/I4387155440"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072638101","display_name":"Harry Caufield","orcid":null},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Harry Caufield","raw_affiliation_strings":["Division of Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA"],"affiliations":[{"raw_affiliation_string":"Division of Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004979535","display_name":"Dylan Gration","orcid":null},"institutions":[{"id":"https://openalex.org/I2801351171","display_name":"King Edward Memorial Hospital","ror":"https://ror.org/00ns3e792","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I2801351171"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Dylan Gration","raw_affiliation_strings":["Western Australian Register of Developmental Anomalies, King Edward Memorial Hospital, 374 Bagot Road, Subiaco, WA, 6008, Australia"],"affiliations":[{"raw_affiliation_string":"Western Australian Register of Developmental Anomalies, King Edward Memorial Hospital, 374 Bagot Road, Subiaco, WA, 6008, Australia","institution_ids":["https://openalex.org/I2801351171"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089939981","display_name":"Gareth Baynam","orcid":"https://orcid.org/0000-0003-4920-9553"},"institutions":[{"id":"https://openalex.org/I2800419323","display_name":"Princess Margaret Hospital for Children","ror":"https://ror.org/04ec98z42","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I2799506148","https://openalex.org/I2800419323","https://openalex.org/I2800882159"]},{"id":"https://openalex.org/I2801351171","display_name":"King Edward Memorial Hospital","ror":"https://ror.org/00ns3e792","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I2801351171"]},{"id":"https://openalex.org/I175234967","display_name":"The Kids Research Institute Australia","ror":"https://ror.org/01dbmzx78","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I175234967"]},{"id":"https://openalex.org/I177877127","display_name":"University of Western Australia","ror":"https://ror.org/047272k79","country_code":"AU","type":"education","lineage":["https://openalex.org/I177877127"]},{"id":"https://openalex.org/I4387155440","display_name":"Perth Children's Hospital","ror":"https://ror.org/015zx6n37","country_code":null,"type":"healthcare","lineage":["https://openalex.org/I4387155440"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Gareth Baynam","raw_affiliation_strings":["Faculty of Health and Medical Sciences, University of Western Australia, 35 Stirling Hwy, Crawley, WA, 6009, Australia","Rare Care Centre, Perth Children's Hospital, 15 Hospital Avenue, Nedlands, WA, 6009, Australia","Telethon Kids Institute, 15 Hospital Avenue, Nedlands, WA, 6009, Australia","Western Australian Register of Developmental Anomalies, King Edward Memorial Hospital, 374 Bagot Road, Subiaco, WA, 6008, Australia"],"affiliations":[{"raw_affiliation_string":"Faculty of Health and Medical Sciences, University of Western Australia, 35 Stirling Hwy, Crawley, WA, 6009, Australia","institution_ids":["https://openalex.org/I177877127"]},{"raw_affiliation_string":"Rare Care Centre, Perth Children's Hospital, 15 Hospital Avenue, Nedlands, WA, 6009, Australia","institution_ids":["https://openalex.org/I2800419323","https://openalex.org/I4387155440"]},{"raw_affiliation_string":"Telethon Kids Institute, 15 Hospital Avenue, Nedlands, WA, 6009, Australia","institution_ids":["https://openalex.org/I175234967"]},{"raw_affiliation_string":"Western Australian Register of Developmental Anomalies, King Edward Memorial Hospital, 374 Bagot Road, Subiaco, WA, 6008, Australia","institution_ids":["https://openalex.org/I2801351171"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064320417","display_name":"Melissa Haendel","orcid":"https://orcid.org/0000-0001-9114-8737"},"institutions":[{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz Medical Campus","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Melissa A. Haendel","raw_affiliation_strings":["University of Colorado Anschutz Medical Campus, Aurora, CO, 80045, USA"],"affiliations":[{"raw_affiliation_string":"University of Colorado Anschutz Medical Campus, Aurora, CO, 80045, USA","institution_ids":["https://openalex.org/I51713134"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033225381","display_name":"Peter N. Robinson","orcid":"https://orcid.org/0000-0002-0736-9199"},"institutions":[{"id":"https://openalex.org/I140172145","display_name":"University of Connecticut","ror":"https://ror.org/02der9h97","country_code":"US","type":"education","lineage":["https://openalex.org/I140172145"]},{"id":"https://openalex.org/I4210115256","display_name":"Jackson Laboratory","ror":"https://ror.org/021sy4w91","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210115256"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Peter N. Robinson","raw_affiliation_strings":["Institute for Systems Genomics, University of Connecticut, Farmington, CT, 06032, USA","The Jackson Laboratory for Genomic Medicine, Farmington, CT, 06032, USA"],"affiliations":[{"raw_affiliation_string":"Institute for Systems Genomics, University of Connecticut, Farmington, CT, 06032, USA","institution_ids":["https://openalex.org/I140172145"]},{"raw_affiliation_string":"The Jackson Laboratory for Genomic Medicine, Farmington, CT, 06032, USA","institution_ids":["https://openalex.org/I4210115256"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002223413","display_name":"Chris Mungall","orcid":"https://orcid.org/0000-0002-6601-2165"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christopher J. Mungall","raw_affiliation_strings":["Division of Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA"],"affiliations":[{"raw_affiliation_string":"Division of Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5073533486","display_name":"Justin Reese","orcid":"https://orcid.org/0000-0002-2170-2250"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Justin T. Reese","raw_affiliation_strings":["Division of Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA"],"affiliations":[{"raw_affiliation_string":"Division of Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA","institution_ids":["https://openalex.org/I148283060"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5011041769"],"corresponding_institution_ids":["https://openalex.org/I2800419323","https://openalex.org/I4387155440"],"apc_list":{"value":1570,"currency":"GBP","value_usd":1925},"apc_paid":{"value":1570,"currency":"GBP","value_usd":1925},"fwci":11.8744,"has_fulltext":true,"cited_by_count":35,"citation_normalized_percentile":{"value":0.98827567,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"24","issue":"1","first_page":"30","last_page":"30"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9904000163078308,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6780126690864563},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.675311803817749},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6672143936157227},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.6241821050643921},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.618060290813446},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.6163668036460876},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5145975351333618},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.48683398962020874},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10252147912979126}],"concepts":[{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6780126690864563},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.675311803817749},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6672143936157227},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.6241821050643921},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.618060290813446},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.6163668036460876},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5145975351333618},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.48683398962020874},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10252147912979126},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019359","descriptor_name":"Knowledge","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019359","descriptor_name":"Knowledge","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019359","descriptor_name":"Knowledge","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019359","descriptor_name":"Knowledge","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019359","descriptor_name":"Knowledge","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019359","descriptor_name":"Knowledge","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019359","descriptor_name":"Knowledge","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035583","descriptor_name":"Rare Diseases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035583","descriptor_name":"Rare Diseases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035583","descriptor_name":"Rare Diseases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035583","descriptor_name":"Rare Diseases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035583","descriptor_name":"Rare Diseases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035583","descriptor_name":"Rare Diseases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035583","descriptor_name":"Rare Diseases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":9,"locations":[{"id":"doi:10.1186/s12911-024-02439-w","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-024-02439-w","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/counter/pdf/10.1186/s12911-024-02439-w","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},{"id":"pmid:38297371","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38297371","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC medical informatics and decision making","raw_type":null},{"id":"pmh:oai:pure.atira.dk:openaire/66071cfb-d40d-4c46-809f-1b22b0cbe646","is_oa":true,"landing_page_url":"https://admin.research-repository.uwa.edu.au/en/publications/66071cfb-d40d-4c46-809f-1b22b0cbe646","pdf_url":null,"source":{"id":"https://openalex.org/S4306402523","display_name":"UWA Profiles and Research Repository (University of Western Australia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I177877127","host_organization_name":"The University of Western Australia","host_organization_lineage":["https://openalex.org/I177877127"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Groza, T, Caufield, H, Gration, D, Baynam, G, Haendel, M A, Robinson, P N, Mungall, C J & Reese, J T 2024, 'An evaluation of GPT models for phenotype concept recognition', BMC Medical Informatics and Decision Making, vol. 24, no. 1, 30. https://doi.org/10.1186/s12911-024-02439-w","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:escholarship.org:ark:/13030/qt0ng965n7","is_oa":true,"landing_page_url":"https://escholarship.org/uc/item/0ng965n7","pdf_url":"https://escholarship.org/content/qt0ng965n7/qt0ng965n7.pdf","source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Medical Informatics and Decision Making, vol 24, iss 1","raw_type":"article"},{"id":"pmh:oai:osti.gov:2470704","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/2470704","pdf_url":"https://www.osti.gov/servlets/purl/2470704","source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10829255","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10829255","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10829255/pdf/12911_2024_Article_2439.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Med Inform Decis Mak","raw_type":"Text"},{"id":"pmh:oai:pure.atira.dk:publications/66071cfb-d40d-4c46-809f-1b22b0cbe646","is_oa":true,"landing_page_url":"https://research-repository.uwa.edu.au/en/publications/66071cfb-d40d-4c46-809f-1b22b0cbe646","pdf_url":null,"source":{"id":"https://openalex.org/S4306402523","display_name":"UWA Profiles and Research Repository (University of Western Australia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I177877127","host_organization_name":"The University of Western Australia","host_organization_lineage":["https://openalex.org/I177877127"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Groza, T, Caufield, H, Gration, D, Baynam, G, Haendel, M A, Robinson, P N, Mungall, C J & Reese, J T 2024, 'An evaluation of GPT models for phenotype concept recognition', BMC Medical Informatics and Decision Making, vol. 24, no. 1, 30. https://doi.org/10.1186/s12911-024-02439-w","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:doaj.org/article:f4fb3d1859b74b69815dbe8519d05b0e","is_oa":true,"landing_page_url":"https://doaj.org/article/f4fb3d1859b74b69815dbe8519d05b0e","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Medical Informatics and Decision Making, Vol 24, Iss 1, Pp 1-12 (2024)","raw_type":"article"},{"id":"pmh:oai:mouseion.jax.org:stfb2024-1029","is_oa":true,"landing_page_url":"https://mouseion.jax.org/stfb2024/26","pdf_url":null,"source":{"id":"https://openalex.org/S4377196421","display_name":"The Mouseion at the JAXlibrary (Jackson Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210115256","host_organization_name":"Jackson Laboratory","host_organization_lineage":["https://openalex.org/I4210115256"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Faculty Research 2024","raw_type":"text"}],"best_oa_location":{"id":"doi:10.1186/s12911-024-02439-w","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-024-02439-w","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/counter/pdf/10.1186/s12911-024-02439-w","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Quality Education","score":0.8299999833106995,"id":"https://metadata.un.org/sdg/4"}],"awards":[{"id":"https://openalex.org/G4236040308","display_name":null,"funder_award_id":"HG010860, OD011883","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5421811534","display_name":null,"funder_award_id":"RM1HG010860, U24HG011449","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"}],"funders":[{"id":"https://openalex.org/F4320330957","display_name":"Angela Wright Bennett Foundation","ror":null},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4391387740.pdf"},"referenced_works_count":29,"referenced_works":["https://openalex.org/W102787101","https://openalex.org/W2119613819","https://openalex.org/W2130222341","https://openalex.org/W2136410628","https://openalex.org/W2510298658","https://openalex.org/W2558643140","https://openalex.org/W2767470330","https://openalex.org/W2805193585","https://openalex.org/W2809721358","https://openalex.org/W2901332105","https://openalex.org/W2911489562","https://openalex.org/W2928818852","https://openalex.org/W2946102094","https://openalex.org/W2951146425","https://openalex.org/W3046375318","https://openalex.org/W3087028093","https://openalex.org/W3212464243","https://openalex.org/W4212919921","https://openalex.org/W4221052202","https://openalex.org/W4226322299","https://openalex.org/W4229444535","https://openalex.org/W4282918066","https://openalex.org/W4291023040","https://openalex.org/W4297253404","https://openalex.org/W4365143687","https://openalex.org/W4384561707","https://openalex.org/W4385571411","https://openalex.org/W4387730624","https://openalex.org/W6604181502"],"related_works":["https://openalex.org/W2361861616","https://openalex.org/W2263699433","https://openalex.org/W2377979023","https://openalex.org/W2218034408","https://openalex.org/W2392921965","https://openalex.org/W2358755282","https://openalex.org/W2625833328","https://openalex.org/W1533177136","https://openalex.org/W4380994516","https://openalex.org/W2251519152"],"abstract_inverted_index":{"Our":[0],"experiments":[1],"show":[2],"that":[3,32],"gpt-4.0":[4],"surpasses":[5],"the":[6,9,13,21,30,39,43,47,49,53,61,67],"state":[7],"of":[8,20,29,46,55,69],"art":[10],"performance":[11],"if":[12],"task":[14],"is":[15,26],"constrained":[16],"to":[17,35],"a":[18],"subset":[19],"target":[22],"ontology":[23],"where":[24],"there":[25],"prior":[27],"knowledge":[28],"terms":[31],"are":[33,41],"expected":[34],"be":[36],"matched.":[37],"While":[38],"results":[40],"promising,":[42],"non-deterministic":[44],"nature":[45],"outcomes,":[48],"high":[50],"cost":[51],"and":[52,64],"lack":[54],"concordance":[56],"between":[57],"different":[58],"runs":[59],"using":[60],"same":[62],"prompt":[63],"input":[65],"make":[66],"use":[68],"these":[70],"LLMs":[71],"challenging":[72],"for":[73],"this":[74],"particular":[75],"task.":[76]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":21},{"year":2024,"cited_by_count":10}],"updated_date":"2026-04-13T07:58:08.660418","created_date":"2025-10-10T00:00:00"}
