{"id":"https://openalex.org/W4392342803","doi":"https://doi.org/10.1186/s12911-024-02420-7","title":"Natural language processing to identify lupus nephritis phenotype in electronic health records","display_name":"Natural language processing to identify lupus nephritis phenotype in electronic health records","publication_year":2024,"publication_date":"2024-03-03","ids":{"openalex":"https://openalex.org/W4392342803","doi":"https://doi.org/10.1186/s12911-024-02420-7","pmid":"https://pubmed.ncbi.nlm.nih.gov/38433189"},"language":"en","primary_location":{"id":"doi:10.1186/s12911-024-02420-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-024-02420-7","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/counter/pdf/10.1186/s12911-024-02420-7","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcmedinformdecismak.biomedcentral.com/counter/pdf/10.1186/s12911-024-02420-7","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5076395007","display_name":"Yu Deng","orcid":"https://orcid.org/0000-0002-1884-4629"},"institutions":[{"id":"https://openalex.org/I111979921","display_name":"Northwestern University","ror":"https://ror.org/000e0be47","country_code":"US","type":"education","lineage":["https://openalex.org/I111979921"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Yu Deng","raw_affiliation_strings":["Center for Health Information Partnerships, Feinberg School of Medicine, Northwestern University, Chicago, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Health Information Partnerships, Feinberg School of Medicine, Northwestern University, Chicago, USA","institution_ids":["https://openalex.org/I111979921"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007540286","display_name":"Jennifer A. Pacheco","orcid":"https://orcid.org/0000-0001-8021-5818"},"institutions":[{"id":"https://openalex.org/I111979921","display_name":"Northwestern University","ror":"https://ror.org/000e0be47","country_code":"US","type":"education","lineage":["https://openalex.org/I111979921"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jennifer A. Pacheco","raw_affiliation_strings":["Center for Genetic Medicine, Feinberg School of Medicine, Northwestern University, Chicago, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Genetic Medicine, Feinberg School of Medicine, Northwestern University, Chicago, USA","institution_ids":["https://openalex.org/I111979921"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066978160","display_name":"Anika Ghosh","orcid":null},"institutions":[{"id":"https://openalex.org/I111979921","display_name":"Northwestern University","ror":"https://ror.org/000e0be47","country_code":"US","type":"education","lineage":["https://openalex.org/I111979921"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Anika Ghosh","raw_affiliation_strings":["Center for Health Information Partnerships, Feinberg School of Medicine, Northwestern University, Chicago, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Health Information Partnerships, Feinberg School of Medicine, Northwestern University, Chicago, USA","institution_ids":["https://openalex.org/I111979921"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070937873","display_name":"Anh Chung","orcid":null},"institutions":[{"id":"https://openalex.org/I111979921","display_name":"Northwestern University","ror":"https://ror.org/000e0be47","country_code":"US","type":"education","lineage":["https://openalex.org/I111979921"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Anh Chung","raw_affiliation_strings":["Center for Health Information Partnerships, Feinberg School of Medicine, Northwestern University, Chicago, USA","Department of Medicine/Rheumatology, Feinberg School of Medicine, Northwestern University, Chicago, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Health Information Partnerships, Feinberg School of Medicine, Northwestern University, Chicago, USA","institution_ids":["https://openalex.org/I111979921"]},{"raw_affiliation_string":"Department of Medicine/Rheumatology, Feinberg School of Medicine, Northwestern University, Chicago, USA","institution_ids":["https://openalex.org/I111979921"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074672910","display_name":"Chengsheng Mao","orcid":"https://orcid.org/0000-0002-1515-9626"},"institutions":[{"id":"https://openalex.org/I111979921","display_name":"Northwestern University","ror":"https://ror.org/000e0be47","country_code":"US","type":"education","lineage":["https://openalex.org/I111979921"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chengsheng Mao","raw_affiliation_strings":["Center for Health Information Partnerships, Feinberg School of Medicine, Northwestern University, Chicago, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Health Information Partnerships, Feinberg School of Medicine, Northwestern University, Chicago, USA","institution_ids":["https://openalex.org/I111979921"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102928402","display_name":"Joshua Smith","orcid":"https://orcid.org/0000-0003-2661-3203"},"institutions":[{"id":"https://openalex.org/I901861585","display_name":"Vanderbilt University Medical Center","ror":"https://ror.org/05dq2gs74","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210162197","https://openalex.org/I901861585"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joshua C. Smith","raw_affiliation_strings":["Department of Biomedical Informatics, Vanderbilt University Medical Center, Nashville, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, Vanderbilt University Medical Center, Nashville, USA","institution_ids":["https://openalex.org/I901861585"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100723221","display_name":"Juan Zhao","orcid":null},"institutions":[{"id":"https://openalex.org/I901861585","display_name":"Vanderbilt University Medical Center","ror":"https://ror.org/05dq2gs74","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210162197","https://openalex.org/I901861585"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Juan Zhao","raw_affiliation_strings":["Department of Biomedical Informatics, Vanderbilt University Medical Center, Nashville, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, Vanderbilt University Medical Center, Nashville, USA","institution_ids":["https://openalex.org/I901861585"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040262386","display_name":"Wei\u2010Qi Wei","orcid":null},"institutions":[{"id":"https://openalex.org/I901861585","display_name":"Vanderbilt University Medical Center","ror":"https://ror.org/05dq2gs74","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210162197","https://openalex.org/I901861585"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Wei-Qi Wei","raw_affiliation_strings":["Department of Biomedical Informatics, Vanderbilt University Medical Center, Nashville, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, Vanderbilt University Medical Center, Nashville, USA","institution_ids":["https://openalex.org/I901861585"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083937269","display_name":"April Barnado","orcid":"https://orcid.org/0000-0002-9573-4335"},"institutions":[{"id":"https://openalex.org/I901861585","display_name":"Vanderbilt University Medical Center","ror":"https://ror.org/05dq2gs74","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210162197","https://openalex.org/I901861585"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"April Barnado","raw_affiliation_strings":["Department of Medicine, Vanderbilt University Medical Center, Nashville, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medicine, Vanderbilt University Medical Center, Nashville, USA","institution_ids":["https://openalex.org/I901861585"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075171209","display_name":"Chad Dorn","orcid":"https://orcid.org/0000-0002-4886-6159"},"institutions":[{"id":"https://openalex.org/I901861585","display_name":"Vanderbilt University Medical Center","ror":"https://ror.org/05dq2gs74","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210162197","https://openalex.org/I901861585"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chad Dorn","raw_affiliation_strings":["Department of Biomedical Informatics, Vanderbilt University Medical Center, Nashville, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, Vanderbilt University Medical Center, Nashville, USA","institution_ids":["https://openalex.org/I901861585"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009604048","display_name":"Chunhua Weng","orcid":"https://orcid.org/0000-0002-9624-0214"},"institutions":[{"id":"https://openalex.org/I45029084","display_name":"City University of Seattle","ror":"https://ror.org/008a9hf75","country_code":"US","type":"education","lineage":["https://openalex.org/I4210086682","https://openalex.org/I45029084"]},{"id":"https://openalex.org/I78577930","display_name":"Columbia University","ror":"https://ror.org/00hj8s172","country_code":"US","type":"education","lineage":["https://openalex.org/I78577930"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chunhua Weng","raw_affiliation_strings":["Department of Biomedical Informatics, Columbia University, New York City, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, Columbia University, New York City, USA","institution_ids":["https://openalex.org/I78577930","https://openalex.org/I45029084"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100331534","display_name":"Cong Liu","orcid":"https://orcid.org/0000-0001-6024-3037"},"institutions":[{"id":"https://openalex.org/I45029084","display_name":"City University of Seattle","ror":"https://ror.org/008a9hf75","country_code":"US","type":"education","lineage":["https://openalex.org/I4210086682","https://openalex.org/I45029084"]},{"id":"https://openalex.org/I78577930","display_name":"Columbia University","ror":"https://ror.org/00hj8s172","country_code":"US","type":"education","lineage":["https://openalex.org/I78577930"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Cong Liu","raw_affiliation_strings":["Department of Biomedical Informatics, Columbia University, New York City, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, Columbia University, New York City, USA","institution_ids":["https://openalex.org/I78577930","https://openalex.org/I45029084"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091770193","display_name":"Adam Cordon","orcid":null},"institutions":[{"id":"https://openalex.org/I111979921","display_name":"Northwestern University","ror":"https://ror.org/000e0be47","country_code":"US","type":"education","lineage":["https://openalex.org/I111979921"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Adam Cordon","raw_affiliation_strings":["Center for Genetic Medicine, Feinberg School of Medicine, Northwestern University, Chicago, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Genetic Medicine, Feinberg School of Medicine, Northwestern University, Chicago, USA","institution_ids":["https://openalex.org/I111979921"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100948559","display_name":"Jingzhi Yu","orcid":null},"institutions":[{"id":"https://openalex.org/I111979921","display_name":"Northwestern University","ror":"https://ror.org/000e0be47","country_code":"US","type":"education","lineage":["https://openalex.org/I111979921"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jingzhi Yu","raw_affiliation_strings":["Center for Health Information Partnerships, Feinberg School of Medicine, Northwestern University, Chicago, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Health Information Partnerships, Feinberg School of Medicine, Northwestern University, Chicago, USA","institution_ids":["https://openalex.org/I111979921"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027412896","display_name":"Yacob G. Tedla","orcid":"https://orcid.org/0000-0002-1403-547X"},"institutions":[{"id":"https://openalex.org/I111979921","display_name":"Northwestern University","ror":"https://ror.org/000e0be47","country_code":"US","type":"education","lineage":["https://openalex.org/I111979921"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yacob Tedla","raw_affiliation_strings":["Center for Health Information Partnerships, Feinberg School of Medicine, Northwestern University, Chicago, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Health Information Partnerships, Feinberg School of Medicine, Northwestern University, Chicago, USA","institution_ids":["https://openalex.org/I111979921"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076495147","display_name":"Abel Kho","orcid":"https://orcid.org/0000-0003-1993-5634"},"institutions":[{"id":"https://openalex.org/I111979921","display_name":"Northwestern University","ror":"https://ror.org/000e0be47","country_code":"US","type":"education","lineage":["https://openalex.org/I111979921"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Abel Kho","raw_affiliation_strings":["Center for Health Information Partnerships, Feinberg School of Medicine, Northwestern University, Chicago, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Health Information Partnerships, Feinberg School of Medicine, Northwestern University, Chicago, USA","institution_ids":["https://openalex.org/I111979921"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010072602","display_name":"Rosalind Ramsey\u2010Goldman","orcid":"https://orcid.org/0000-0001-8712-787X"},"institutions":[{"id":"https://openalex.org/I111979921","display_name":"Northwestern University","ror":"https://ror.org/000e0be47","country_code":"US","type":"education","lineage":["https://openalex.org/I111979921"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rosalind Ramsey-Goldman","raw_affiliation_strings":["Department of Medicine/Rheumatology, Feinberg School of Medicine, Northwestern University, Chicago, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medicine/Rheumatology, Feinberg School of Medicine, Northwestern University, Chicago, USA","institution_ids":["https://openalex.org/I111979921"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086482657","display_name":"Theresa L. Walunas","orcid":"https://orcid.org/0000-0002-7653-3650"},"institutions":[{"id":"https://openalex.org/I111979921","display_name":"Northwestern University","ror":"https://ror.org/000e0be47","country_code":"US","type":"education","lineage":["https://openalex.org/I111979921"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Theresa Walunas","raw_affiliation_strings":["Center for Health Information Partnerships, Feinberg School of Medicine, Northwestern University, Chicago, USA. t-walunas@northwestern.edu","Center for Health Information Partnerships, Feinberg School of Medicine, Northwestern University, Chicago, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Health Information Partnerships, Feinberg School of Medicine, Northwestern University, Chicago, USA. t-walunas@northwestern.edu","institution_ids":["https://openalex.org/I111979921"]},{"raw_affiliation_string":"Center for Health Information Partnerships, Feinberg School of Medicine, Northwestern University, Chicago, USA","institution_ids":["https://openalex.org/I111979921"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100452550","display_name":"Yuan Luo","orcid":"https://orcid.org/0000-0003-0195-7456"},"institutions":[{"id":"https://openalex.org/I111979921","display_name":"Northwestern University","ror":"https://ror.org/000e0be47","country_code":"US","type":"education","lineage":["https://openalex.org/I111979921"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yuan Luo","raw_affiliation_strings":["Center for Health Information Partnerships, Feinberg School of Medicine, Northwestern University, Chicago, USA. yuan.luo@northwestern.edu","Center for Health Information Partnerships, Feinberg School of Medicine, Northwestern University, Chicago, USA"],"raw_orcid":"https://orcid.org/0000-0003-0195-7456","affiliations":[{"raw_affiliation_string":"Center for Health Information Partnerships, Feinberg School of Medicine, Northwestern University, Chicago, USA. yuan.luo@northwestern.edu","institution_ids":["https://openalex.org/I111979921"]},{"raw_affiliation_string":"Center for Health Information Partnerships, Feinberg School of Medicine, Northwestern University, Chicago, USA","institution_ids":["https://openalex.org/I111979921"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":19,"corresponding_author_ids":["https://openalex.org/A5076395007"],"corresponding_institution_ids":["https://openalex.org/I111979921"],"apc_list":{"value":1570,"currency":"GBP","value_usd":1925},"apc_paid":{"value":1570,"currency":"GBP","value_usd":1925},"fwci":3.4164,"has_fulltext":true,"cited_by_count":10,"citation_normalized_percentile":{"value":0.92064605,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"22","issue":"S2","first_page":"348","last_page":"348"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10308","display_name":"Systemic Lupus Erythematosus Research","score":0.6200000047683716,"subfield":{"id":"https://openalex.org/subfields/2745","display_name":"Rheumatology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10308","display_name":"Systemic Lupus Erythematosus Research","score":0.6200000047683716,"subfield":{"id":"https://openalex.org/subfields/2745","display_name":"Rheumatology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.07050000131130219,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.04919999837875366,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/lupus-nephritis","display_name":"Lupus nephritis","score":0.9065917730331421},{"id":"https://openalex.org/keywords/systemic-lupus-erythematosus","display_name":"Systemic lupus erythematosus","score":0.6685979962348938},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.593134343624115},{"id":"https://openalex.org/keywords/identifier","display_name":"Identifier","score":0.520285427570343},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.50545334815979},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.446739137172699},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.44542330503463745},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.43788713216781616},{"id":"https://openalex.org/keywords/electronic-health-record","display_name":"Electronic health record","score":0.43425628542900085},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3897116482257843},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.37449556589126587},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3565387725830078},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.23146983981132507},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.20946446061134338}],"concepts":[{"id":"https://openalex.org/C2779912601","wikidata":"https://www.wikidata.org/wiki/Q1621830","display_name":"Lupus nephritis","level":3,"score":0.9065917730331421},{"id":"https://openalex.org/C2776912625","wikidata":"https://www.wikidata.org/wiki/Q1485","display_name":"Systemic lupus erythematosus","level":3,"score":0.6685979962348938},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.593134343624115},{"id":"https://openalex.org/C154504017","wikidata":"https://www.wikidata.org/wiki/Q853614","display_name":"Identifier","level":2,"score":0.520285427570343},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.50545334815979},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.446739137172699},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.44542330503463745},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.43788713216781616},{"id":"https://openalex.org/C3020144179","wikidata":"https://www.wikidata.org/wiki/Q10871684","display_name":"Electronic health record","level":3,"score":0.43425628542900085},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3897116482257843},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.37449556589126587},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3565387725830078},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.23146983981132507},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.20946446061134338},{"id":"https://openalex.org/C99454951","wikidata":"https://www.wikidata.org/wiki/Q932068","display_name":"Environmental health","level":1,"score":0.0},{"id":"https://openalex.org/C160735492","wikidata":"https://www.wikidata.org/wiki/Q31207","display_name":"Health care","level":2,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C50522688","wikidata":"https://www.wikidata.org/wiki/Q189833","display_name":"Economic growth","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008180","descriptor_name":"Lupus Erythematosus, Systemic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008180","descriptor_name":"Lupus Erythematosus, Systemic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008180","descriptor_name":"Lupus Erythematosus, Systemic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008180","descriptor_name":"Lupus Erythematosus, Systemic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008180","descriptor_name":"Lupus Erythematosus, Systemic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008180","descriptor_name":"Lupus Erythematosus, Systemic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008180","descriptor_name":"Lupus Erythematosus, Systemic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008180","descriptor_name":"Lupus Erythematosus, Systemic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008180","descriptor_name":"Lupus Erythematosus, Systemic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008180","descriptor_name":"Lupus Erythematosus, Systemic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008181","descriptor_name":"Lupus Nephritis","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D008181","descriptor_name":"Lupus Nephritis","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D008181","descriptor_name":"Lupus Nephritis","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D008181","descriptor_name":"Lupus Nephritis","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D008181","descriptor_name":"Lupus Nephritis","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D008181","descriptor_name":"Lupus Nephritis","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D008181","descriptor_name":"Lupus Nephritis","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D008181","descriptor_name":"Lupus Nephritis","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D008181","descriptor_name":"Lupus Nephritis","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D008181","descriptor_name":"Lupus Nephritis","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035583","descriptor_name":"Rare Diseases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035583","descriptor_name":"Rare Diseases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035583","descriptor_name":"Rare Diseases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035583","descriptor_name":"Rare Diseases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035583","descriptor_name":"Rare Diseases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035583","descriptor_name":"Rare Diseases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035583","descriptor_name":"Rare Diseases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035583","descriptor_name":"Rare Diseases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035583","descriptor_name":"Rare Diseases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035583","descriptor_name":"Rare Diseases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12911-024-02420-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-024-02420-7","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/counter/pdf/10.1186/s12911-024-02420-7","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},{"id":"pmid:38433189","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38433189","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC medical informatics and decision making","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10910523","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10910523","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10910523/pdf/12911_2024_Article_2420.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Med Inform Decis Mak","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:427993f2ebd84e34b2219fd539d26f42","is_oa":true,"landing_page_url":"https://doaj.org/article/427993f2ebd84e34b2219fd539d26f42","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Medical Informatics and Decision Making, Vol 22, Iss S2, Pp 1-11 (2024)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s12911-024-02420-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-024-02420-7","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/counter/pdf/10.1186/s12911-024-02420-7","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.5799999833106995,"id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G2223568566","display_name":null,"funder_award_id":"U01HG008680","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G5489223097","display_name":null,"funder_award_id":"1K08 AR072757-01","funder_id":"https://openalex.org/F4320337362","funder_display_name":"National Institute of Arthritis and Musculoskeletal and Skin Diseases"},{"id":"https://openalex.org/G5722808842","display_name":null,"funder_award_id":"U01HG008673","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G6185327847","display_name":null,"funder_award_id":"U01HG008672","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G6989156909","display_name":null,"funder_award_id":"5R21AR072262","funder_id":"https://openalex.org/F4320337362","funder_display_name":"National Institute of Arthritis and Musculoskeletal and Skin Diseases"},{"id":"https://openalex.org/G7649962165","display_name":null,"funder_award_id":"R61 AR076824","funder_id":"https://openalex.org/F4320337362","funder_display_name":"National Institute of Arthritis and Musculoskeletal and Skin Diseases"}],"funders":[{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"},{"id":"https://openalex.org/F4320337362","display_name":"National Institute of Arthritis and Musculoskeletal and Skin Diseases","ror":"https://ror.org/006zn3t30"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4392342803.pdf"},"referenced_works_count":23,"referenced_works":["https://openalex.org/W2044540807","https://openalex.org/W2070527591","https://openalex.org/W2074931707","https://openalex.org/W2129931607","https://openalex.org/W2138162199","https://openalex.org/W2159860161","https://openalex.org/W2252979829","https://openalex.org/W2465446350","https://openalex.org/W2553726688","https://openalex.org/W2771817472","https://openalex.org/W2775952680","https://openalex.org/W2786235347","https://openalex.org/W2808129629","https://openalex.org/W2906053813","https://openalex.org/W2937669142","https://openalex.org/W2948488594","https://openalex.org/W2948946994","https://openalex.org/W2962937474","https://openalex.org/W2966041078","https://openalex.org/W3099229119","https://openalex.org/W3174887887","https://openalex.org/W4200310129","https://openalex.org/W4304099270"],"related_works":["https://openalex.org/W2471395144","https://openalex.org/W2098134050","https://openalex.org/W2776803289","https://openalex.org/W2778847013","https://openalex.org/W2364717911","https://openalex.org/W2158944380","https://openalex.org/W3166910253","https://openalex.org/W2591530766","https://openalex.org/W2951958669","https://openalex.org/W3214891379"],"abstract_inverted_index":{"BACKGROUND:":[0],"Systemic":[1],"lupus":[2,42,47,98,133,301,339],"erythematosus":[3],"(SLE)":[4],"is":[5,37,70],"a":[6,38,158,220,226,250],"rare":[7],"autoimmune":[8],"disorder":[9],"characterized":[10],"by":[11],"an":[12],"unpredictable":[13],"course":[14],"of":[15,25,30,41,66,204,209,215,217,222,229],"flares":[16],"and":[17,35,61,76,86,107,122,136,167,200,219,240,273,279,291,324,347],"remission":[18],"with":[19,135,186],"diverse":[20],"manifestations.":[21],"Lupus":[22,78],"nephritis,":[23,99],"one":[24],"the":[26,67,146,241,286,299,311,316],"major":[27],"disease":[28],"manifestations":[29],"SLE":[31],"for":[32,72,182,344],"organ":[33],"damage":[34],"mortality,":[36],"key":[39],"component":[40],"classification":[43],"criteria.":[44],"Accurately":[45],"identifying":[46],"nephritis":[48,79,134,302,340],"in":[49,284,321,342],"electronic":[50],"health":[51],"records":[52],"(EHRs)":[53],"would":[54],"therefore":[55],"benefit":[56],"large":[57],"cohort":[58],"observational":[59],"studies":[60],"clinical":[62,123,345],"trials":[63],"where":[64],"characterization":[65],"patient":[68],"population":[69],"critical":[71,95],"recruitment,":[73],"study":[74],"design,":[75],"analysis.":[77],"can":[80,331],"be":[81],"recognized":[82],"through":[83],"procedure":[84],"codes":[85],"structured":[87,163,187,234,268,317],"data,":[88,269],"such":[89,100],"as":[90,101,333],"laboratory":[91],"tests.":[92],"However,":[93],"other":[94,190],"information":[96,118],"documenting":[97],"histologic":[102],"reports":[103,121],"from":[104,119,145,252,266],"kidney":[105],"biopsies":[106],"prior":[108],"medical":[109],"history":[110],"narratives,":[111],"require":[112],"sophisticated":[113],"text":[114],"processing":[115,140],"to":[116,131,298,315,336],"mine":[117],"pathology":[120],"notes.":[124],"In":[125],"this":[126],"study,":[127],"we":[128],"developed":[129,155],"algorithms":[130,169,330],"identify":[132,338],"without":[137],"natural":[138],"language":[139],"(NLP)":[141],"using":[142,161,170],"EHR":[143,343],"data":[144,164,318],"Northwestern":[147],"Medicine":[148],"Enterprise":[149],"Data":[150],"Warehouse":[151],"(NMEDW).":[152],"METHODS:":[153],"We":[154],"five":[156],"algorithms:":[157],"rule-based":[159],"algorithm":[160,239,245,320],"only":[162,319],"(baseline":[165],"algorithm)":[166],"four":[168],"different":[171,202],"NLP":[172,176,192,244,262,306,329],"models.":[173],"The":[174,189,237,328],"first":[175],"model":[177,263,309],"applied":[178],"simple":[179],"regular":[180,231,270],"expression":[181,232,271],"keywords":[183],"search":[184],"combined":[185],"data.":[188],"three":[191,223],"models":[193],"were":[194,246],"based":[195],"on":[196,249],"regularized":[197],"logistic":[198],"regression":[199],"used":[201],"sets":[203],"features":[205,265],"including":[206],"positive":[207],"mention":[208],"concept":[210,275],"unique":[211,276],"identifiers":[212,277],"(CUIs),":[213],"number":[214],"appearances":[216],"CUIs,":[218,230],"mixture":[221],"components":[224],"(i.e.":[225],"curated":[227],"list":[228],"concepts,":[233,272],"data)":[235],"respectively.":[236],"baseline":[238,300],"best":[242,260],"performing":[243,261],"externally":[247],"validated":[248],"dataset":[251],"Vanderbilt":[253],"University":[254],"Medical":[255],"Center":[256],"(VUMC).":[257],"RESULTS:":[258],"Our":[259,305],"incorporated":[264],"both":[267,285,322],"mapped":[274],"(CUIs)":[278],"showed":[280],"improved":[281,310],"F":[282],"measure":[283],"NMEDW":[287],"(0.41":[288],"vs":[289,294],"0.79)":[290],"VUMC":[292],"(0.52":[293],"0.93)":[295],"datasets":[296],"compared":[297,314],"algorithm.":[303],"CONCLUSION:":[304],"MetaMap":[307],"mixed":[308],"F-measure":[312],"greatly":[313],"internal":[323],"external":[325],"validation":[326],"datasets.":[327],"serve":[332],"powerful":[334],"tools":[335],"accurately":[337],"phenotype":[341],"research":[346],"better":[348],"targeted":[349],"therapies.":[350]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":1}],"updated_date":"2026-04-29T09:16:38.111599","created_date":"2025-10-10T00:00:00"}
