{"id":"https://openalex.org/W4318195334","doi":"https://doi.org/10.1186/s12911-023-02117-3","title":"Entity and relation extraction from clinical case reports of COVID-19: a natural language processing approach","display_name":"Entity and relation extraction from clinical case reports of COVID-19: a natural language processing approach","publication_year":2023,"publication_date":"2023-01-26","ids":{"openalex":"https://openalex.org/W4318195334","doi":"https://doi.org/10.1186/s12911-023-02117-3","pmid":"https://pubmed.ncbi.nlm.nih.gov/36703154"},"language":"en","primary_location":{"id":"doi:10.1186/s12911-023-02117-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-023-02117-3","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/counter/pdf/10.1186/s12911-023-02117-3","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcmedinformdecismak.biomedcentral.com/counter/pdf/10.1186/s12911-023-02117-3","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5053939840","display_name":"Shaina Raza","orcid":"https://orcid.org/0000-0003-1061-5845"},"institutions":[{"id":"https://openalex.org/I4210125326","display_name":"Public Health Ontario","ror":"https://ror.org/025z8ah66","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I4210125326"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Shaina Raza","raw_affiliation_strings":["Dalla Lana School of Public Health, University of Toronto, Toronto, ON, Canada. shaina.raza@oahpp.ca","Public Health Ontario (PHO), Toronto, ON, Canada. shaina.raza@oahpp.ca","Public Health Ontario (PHO), Toronto, ON, Canada"],"affiliations":[{"raw_affiliation_string":"Dalla Lana School of Public Health, University of Toronto, Toronto, ON, Canada. shaina.raza@oahpp.ca","institution_ids":["https://openalex.org/I4210125326"]},{"raw_affiliation_string":"Public Health Ontario (PHO), Toronto, ON, Canada. shaina.raza@oahpp.ca","institution_ids":["https://openalex.org/I4210125326"]},{"raw_affiliation_string":"Public Health Ontario (PHO), Toronto, ON, Canada","institution_ids":["https://openalex.org/I4210125326"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5110685784","display_name":"Brian Schwartz","orcid":null},"institutions":[{"id":"https://openalex.org/I4210125326","display_name":"Public Health Ontario","ror":"https://ror.org/025z8ah66","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I4210125326"]},{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Brian Schwartz","raw_affiliation_strings":["Dalla Lana School of Public Health, University of Toronto, Toronto, ON, Canada","Public Health Ontario (PHO), Toronto, ON, Canada"],"affiliations":[{"raw_affiliation_string":"Dalla Lana School of Public Health, University of Toronto, Toronto, ON, Canada","institution_ids":["https://openalex.org/I4210125326","https://openalex.org/I185261750"]},{"raw_affiliation_string":"Public Health Ontario (PHO), Toronto, ON, Canada","institution_ids":["https://openalex.org/I4210125326"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5053939840"],"corresponding_institution_ids":["https://openalex.org/I4210125326"],"apc_list":{"value":1570,"currency":"GBP","value_usd":1925},"apc_paid":{"value":1570,"currency":"GBP","value_usd":1925},"fwci":4.8392,"has_fulltext":true,"cited_by_count":29,"citation_normalized_percentile":{"value":0.95987358,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"23","issue":"1","first_page":"20","last_page":"20"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9904999732971191,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.9879999756813049,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/coronavirus-disease-2019","display_name":"Coronavirus disease 2019 (COVID-19)","score":0.7128635048866272},{"id":"https://openalex.org/keywords/health-informatics","display_name":"Health informatics","score":0.6706282496452332},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6225393414497375},{"id":"https://openalex.org/keywords/relation","display_name":"Relation (database)","score":0.5672833323478699},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.5609763860702515},{"id":"https://openalex.org/keywords/2019-20-coronavirus-outbreak","display_name":"2019-20 coronavirus outbreak","score":0.5002593994140625},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.4739563465118408},{"id":"https://openalex.org/keywords/severe-acute-respiratory-syndrome-coronavirus-2","display_name":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)","score":0.4726856052875519},{"id":"https://openalex.org/keywords/relationship-extraction","display_name":"Relationship extraction","score":0.4608234167098999},{"id":"https://openalex.org/keywords/natural-language","display_name":"Natural language","score":0.4109148681163788},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.40368831157684326},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.26315051317214966},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.19370383024215698},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.1750008761882782},{"id":"https://openalex.org/keywords/public-health","display_name":"Public health","score":0.13236451148986816}],"concepts":[{"id":"https://openalex.org/C3008058167","wikidata":"https://www.wikidata.org/wiki/Q84263196","display_name":"Coronavirus disease 2019 (COVID-19)","level":4,"score":0.7128635048866272},{"id":"https://openalex.org/C145642194","wikidata":"https://www.wikidata.org/wiki/Q870895","display_name":"Health informatics","level":3,"score":0.6706282496452332},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6225393414497375},{"id":"https://openalex.org/C25343380","wikidata":"https://www.wikidata.org/wiki/Q277521","display_name":"Relation (database)","level":2,"score":0.5672833323478699},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.5609763860702515},{"id":"https://openalex.org/C3006700255","wikidata":"https://www.wikidata.org/wiki/Q81068910","display_name":"2019-20 coronavirus outbreak","level":3,"score":0.5002593994140625},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.4739563465118408},{"id":"https://openalex.org/C3007834351","wikidata":"https://www.wikidata.org/wiki/Q82069695","display_name":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)","level":5,"score":0.4726856052875519},{"id":"https://openalex.org/C153604712","wikidata":"https://www.wikidata.org/wiki/Q7310755","display_name":"Relationship extraction","level":3,"score":0.4608234167098999},{"id":"https://openalex.org/C195324797","wikidata":"https://www.wikidata.org/wiki/Q33742","display_name":"Natural language","level":2,"score":0.4109148681163788},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.40368831157684326},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.26315051317214966},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.19370383024215698},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.1750008761882782},{"id":"https://openalex.org/C138816342","wikidata":"https://www.wikidata.org/wiki/Q189603","display_name":"Public health","level":2,"score":0.13236451148986816},{"id":"https://openalex.org/C116675565","wikidata":"https://www.wikidata.org/wiki/Q3241045","display_name":"Outbreak","level":2,"score":0.0},{"id":"https://openalex.org/C524204448","wikidata":"https://www.wikidata.org/wiki/Q788926","display_name":"Infectious disease (medical specialty)","level":3,"score":0.0},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12911-023-02117-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-023-02117-3","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/counter/pdf/10.1186/s12911-023-02117-3","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},{"id":"pmid:36703154","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36703154","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC medical informatics and decision making","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9879259","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9879259","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC9879259/pdf/12911_2023_Article_2117.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Med Inform Decis Mak","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:a2e8467df93f4f979d094edb5028e212","is_oa":true,"landing_page_url":"https://doaj.org/article/a2e8467df93f4f979d094edb5028e212","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Medical Informatics and Decision Making, Vol 23, Iss 1, Pp 1-17 (2023)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s12911-023-02117-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-023-02117-3","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/counter/pdf/10.1186/s12911-023-02117-3","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","score":0.8500000238418579,"display_name":"Quality Education"}],"awards":[{"id":"https://openalex.org/G3304509792","display_name":null,"funder_award_id":"COVID-19","funder_id":"https://openalex.org/F4320334506","funder_display_name":"Canadian Institutes of Health Research"},{"id":"https://openalex.org/G4389354971","display_name":null,"funder_award_id":"Research","funder_id":"https://openalex.org/F4320334506","funder_display_name":"Canadian Institutes of Health Research"},{"id":"https://openalex.org/G6282788884","display_name":null,"funder_award_id":"Canadian Institutes of Health","funder_id":"https://openalex.org/F4320334506","funder_display_name":"Canadian Institutes of Health Research"}],"funders":[{"id":"https://openalex.org/F4320334506","display_name":"Canadian Institutes of Health Research","ror":"https://ror.org/01gavpb45"},{"id":"https://openalex.org/F4320338072","display_name":"Institute of Health Services and Policy Research","ror":"https://ror.org/0091yh482"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4318195334.pdf"},"referenced_works_count":71,"referenced_works":["https://openalex.org/W1491517537","https://openalex.org/W1532940542","https://openalex.org/W1956471287","https://openalex.org/W1973036367","https://openalex.org/W2020278455","https://openalex.org/W2064675550","https://openalex.org/W2093223666","https://openalex.org/W2097352005","https://openalex.org/W2120844411","https://openalex.org/W2123179625","https://openalex.org/W2127030454","https://openalex.org/W2139885235","https://openalex.org/W2142321231","https://openalex.org/W2144578941","https://openalex.org/W2169099542","https://openalex.org/W2296283641","https://openalex.org/W2395579298","https://openalex.org/W2513378248","https://openalex.org/W2563526956","https://openalex.org/W2626407095","https://openalex.org/W2729101176","https://openalex.org/W2737331085","https://openalex.org/W2743028754","https://openalex.org/W2769387903","https://openalex.org/W2774772126","https://openalex.org/W2777746208","https://openalex.org/W2884462261","https://openalex.org/W2890830728","https://openalex.org/W2911489562","https://openalex.org/W2925613093","https://openalex.org/W2955116803","https://openalex.org/W2962881743","https://openalex.org/W2963339489","https://openalex.org/W2963625095","https://openalex.org/W2963716420","https://openalex.org/W2964167098","https://openalex.org/W2970771982","https://openalex.org/W2971258845","https://openalex.org/W2982104142","https://openalex.org/W2984542815","https://openalex.org/W2997394673","https://openalex.org/W3017116235","https://openalex.org/W3020152921","https://openalex.org/W3027982260","https://openalex.org/W3035259209","https://openalex.org/W3043710593","https://openalex.org/W3047144258","https://openalex.org/W3048132839","https://openalex.org/W3082330004","https://openalex.org/W3103134232","https://openalex.org/W3105491236","https://openalex.org/W3123829608","https://openalex.org/W3129160532","https://openalex.org/W3152019416","https://openalex.org/W3172497214","https://openalex.org/W3177066014","https://openalex.org/W3186444799","https://openalex.org/W3187042379","https://openalex.org/W3202375701","https://openalex.org/W3207128852","https://openalex.org/W3211056521","https://openalex.org/W4210687090","https://openalex.org/W4214866420","https://openalex.org/W4220761442","https://openalex.org/W4226475630","https://openalex.org/W4226536126","https://openalex.org/W4229335055","https://openalex.org/W4238337309","https://openalex.org/W4281817583","https://openalex.org/W4313626687","https://openalex.org/W6739901393"],"related_works":["https://openalex.org/W4319940250","https://openalex.org/W2352298027","https://openalex.org/W842810586","https://openalex.org/W2092919065","https://openalex.org/W4236762297","https://openalex.org/W3138801416","https://openalex.org/W2369351710","https://openalex.org/W2594363579","https://openalex.org/W2169232658","https://openalex.org/W2444550338"],"abstract_inverted_index":{"A":[0],"similar":[1],"approach":[2],"can":[3],"be":[4],"generalized":[5],"to":[6,13],"other":[7,23],"infectious":[8,24],"diseases.":[9,25],"It":[10],"is":[11],"worthwhile":[12],"use":[14],"prior":[15],"knowledge":[16],"acquired":[17],"through":[18],"transfer":[19],"learning":[20],"when":[21],"researching":[22]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":8},{"year":2023,"cited_by_count":11},{"year":2022,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
