{"id":"https://openalex.org/W4290094205","doi":"https://doi.org/10.1186/s12911-022-02085-0","title":"LiSA: an assisted literature search pipeline for detecting serious adverse drug events with deep learning","display_name":"LiSA: an assisted literature search pipeline for detecting serious adverse drug events with deep learning","publication_year":2022,"publication_date":"2022-12-22","ids":{"openalex":"https://openalex.org/W4290094205","doi":"https://doi.org/10.1186/s12911-022-02085-0","pmid":"https://pubmed.ncbi.nlm.nih.gov/36550485"},"language":"en","primary_location":{"id":"doi:10.1186/s12911-022-02085-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-022-02085-0","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/counter/pdf/10.1186/s12911-022-02085-0","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcmedinformdecismak.biomedcentral.com/counter/pdf/10.1186/s12911-022-02085-0","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5044128867","display_name":"Vincent Martenot","orcid":null},"institutions":[{"id":"https://openalex.org/I4210144377","display_name":"IQVIA (France)","ror":"https://ror.org/0394bpd20","country_code":"FR","type":"company","lineage":["https://openalex.org/I4210108991","https://openalex.org/I4210144377"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Vincent Martenot","raw_affiliation_strings":["Quinten, 8 rue Vernier, 75017, Paris, France. v.martenot@quinten-france.com","Quinten, 8 rue Vernier, 75017, Paris, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Quinten, 8 rue Vernier, 75017, Paris, France. v.martenot@quinten-france.com","institution_ids":["https://openalex.org/I4210144377"]},{"raw_affiliation_string":"Quinten, 8 rue Vernier, 75017, Paris, France","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024109428","display_name":"Valentin Masdeu","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Valentin Masdeu","raw_affiliation_strings":["Quinten, 8 rue Vernier, 75017, Paris, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Quinten, 8 rue Vernier, 75017, Paris, France","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074492638","display_name":"Jean Cupe","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jean Cupe","raw_affiliation_strings":["Quinten, 8 rue Vernier, 75017, Paris, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Quinten, 8 rue Vernier, 75017, Paris, France","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075354015","display_name":"Faustine Gehin","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Faustine Gehin","raw_affiliation_strings":["Quinten, 8 rue Vernier, 75017, Paris, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Quinten, 8 rue Vernier, 75017, Paris, France","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010212529","display_name":"Margot Blanchon","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Margot Blanchon","raw_affiliation_strings":["Quinten, 8 rue Vernier, 75017, Paris, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Quinten, 8 rue Vernier, 75017, Paris, France","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058159199","display_name":"Julien Dauriat","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Julien Dauriat","raw_affiliation_strings":["Quinten, 8 rue Vernier, 75017, Paris, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Quinten, 8 rue Vernier, 75017, Paris, France","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051900328","display_name":"A. J. van der Horst","orcid":"https://orcid.org/0000-0001-9149-6707"},"institutions":[{"id":"https://openalex.org/I1325311562","display_name":"Swissmedic","ror":"https://ror.org/03hdjmh87","country_code":"CH","type":"government","lineage":["https://openalex.org/I1325311562"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Alexander Horst","raw_affiliation_strings":["Swiss Agency for Therapeutic Products, Swissmedic, Hallerstrasse 7, 3012, Bern, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Swiss Agency for Therapeutic Products, Swissmedic, Hallerstrasse 7, 3012, Bern, Switzerland","institution_ids":["https://openalex.org/I1325311562"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049159781","display_name":"Michael Renaudin","orcid":null},"institutions":[{"id":"https://openalex.org/I1325311562","display_name":"Swissmedic","ror":"https://ror.org/03hdjmh87","country_code":"CH","type":"government","lineage":["https://openalex.org/I1325311562"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Michael Renaudin","raw_affiliation_strings":["Swiss Agency for Therapeutic Products, Swissmedic, Hallerstrasse 7, 3012, Bern, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Swiss Agency for Therapeutic Products, Swissmedic, Hallerstrasse 7, 3012, Bern, Switzerland","institution_ids":["https://openalex.org/I1325311562"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056770025","display_name":"Philippe Girard","orcid":"https://orcid.org/0000-0001-7202-6910"},"institutions":[{"id":"https://openalex.org/I1325311562","display_name":"Swissmedic","ror":"https://ror.org/03hdjmh87","country_code":"CH","type":"government","lineage":["https://openalex.org/I1325311562"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Philippe Girard","raw_affiliation_strings":["Swiss Agency for Therapeutic Products, Swissmedic, Hallerstrasse 7, 3012, Bern, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Swiss Agency for Therapeutic Products, Swissmedic, Hallerstrasse 7, 3012, Bern, Switzerland","institution_ids":["https://openalex.org/I1325311562"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5088630634","display_name":"Jean\u2010Daniel Zucker","orcid":"https://orcid.org/0000-0002-5597-7922"},"institutions":[{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I4210153851","display_name":"Unit\u00e9 de Mod\u00e9lisation Math\u00e9matique et Informatique des Syst\u00e8mes Complexes","ror":"https://ror.org/053kxkj53","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1327553481","https://openalex.org/I154202486","https://openalex.org/I2799535048","https://openalex.org/I2802818602","https://openalex.org/I39804081","https://openalex.org/I4210088668","https://openalex.org/I4210090127","https://openalex.org/I4210113730","https://openalex.org/I4210131494","https://openalex.org/I4210153851","https://openalex.org/I4210166444","https://openalex.org/I4405257220"]},{"id":"https://openalex.org/I4210166444","display_name":"Institut de Recherche pour le D\u00e9veloppement","ror":"https://ror.org/05q3vnk25","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1327553481","https://openalex.org/I154202486","https://openalex.org/I2799535048","https://openalex.org/I2802818602","https://openalex.org/I4210088668","https://openalex.org/I4210090127","https://openalex.org/I4210113730","https://openalex.org/I4210131494","https://openalex.org/I4210166444","https://openalex.org/I4405257220"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Jean-Daniel Zucker","raw_affiliation_strings":["UMMISCO, Sorbonne University, IRD, Bondy, France. Jean-Daniel.zucker@ird.fr","UMMISCO, Sorbonne University, IRD, Bondy, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"UMMISCO, Sorbonne University, IRD, Bondy, France. Jean-Daniel.zucker@ird.fr","institution_ids":["https://openalex.org/I39804081","https://openalex.org/I4210153851","https://openalex.org/I4210166444"]},{"raw_affiliation_string":"UMMISCO, Sorbonne University, IRD, Bondy, France","institution_ids":["https://openalex.org/I4210153851","https://openalex.org/I39804081","https://openalex.org/I4210166444"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5044128867","https://openalex.org/A5088630634"],"corresponding_institution_ids":["https://openalex.org/I39804081","https://openalex.org/I4210144377","https://openalex.org/I4210153851","https://openalex.org/I4210166444"],"apc_list":{"value":1570,"currency":"GBP","value_usd":1925},"apc_paid":{"value":1570,"currency":"GBP","value_usd":1925},"fwci":2.6972,"has_fulltext":true,"cited_by_count":20,"citation_normalized_percentile":{"value":0.90366267,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":99},"biblio":{"volume":"22","issue":"1","first_page":"338","last_page":"338"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11943","display_name":"Pharmacovigilance and Adverse Drug Reactions","score":0.9758999943733215,"subfield":{"id":"https://openalex.org/subfields/3005","display_name":"Toxicology"},"field":{"id":"https://openalex.org/fields/30","display_name":"Pharmacology, Toxicology and Pharmaceutics"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11943","display_name":"Pharmacovigilance and Adverse Drug Reactions","score":0.9758999943733215,"subfield":{"id":"https://openalex.org/subfields/3005","display_name":"Toxicology"},"field":{"id":"https://openalex.org/fields/30","display_name":"Pharmacology, Toxicology and Pharmaceutics"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.007699999958276749,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.007199999876320362,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7863202691078186},{"id":"https://openalex.org/keywords/pharmacovigilance","display_name":"Pharmacovigilance","score":0.7003819346427917},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.6615879535675049},{"id":"https://openalex.org/keywords/usability","display_name":"Usability","score":0.5194775462150574},{"id":"https://openalex.org/keywords/modular-design","display_name":"Modular design","score":0.44526946544647217},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.39469823241233826},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3820219039916992},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3798221945762634},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3703334927558899},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3304695188999176},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.19421464204788208},{"id":"https://openalex.org/keywords/adverse-effect","display_name":"Adverse effect","score":0.1934758722782135},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.1554950475692749}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7863202691078186},{"id":"https://openalex.org/C57658597","wikidata":"https://www.wikidata.org/wiki/Q1550789","display_name":"Pharmacovigilance","level":3,"score":0.7003819346427917},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.6615879535675049},{"id":"https://openalex.org/C170130773","wikidata":"https://www.wikidata.org/wiki/Q216378","display_name":"Usability","level":2,"score":0.5194775462150574},{"id":"https://openalex.org/C101468663","wikidata":"https://www.wikidata.org/wiki/Q1620158","display_name":"Modular design","level":2,"score":0.44526946544647217},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.39469823241233826},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3820219039916992},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3798221945762634},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3703334927558899},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3304695188999176},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.19421464204788208},{"id":"https://openalex.org/C197934379","wikidata":"https://www.wikidata.org/wiki/Q2047938","display_name":"Adverse effect","level":2,"score":0.1934758722782135},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.1554950475692749},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016907","descriptor_name":"Adverse Drug Reaction Reporting Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016907","descriptor_name":"Adverse Drug Reaction Reporting Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016907","descriptor_name":"Adverse Drug Reaction Reporting Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064420","descriptor_name":"Drug-Related Side Effects and Adverse Reactions","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D064420","descriptor_name":"Drug-Related Side Effects and Adverse Reactions","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D064420","descriptor_name":"Drug-Related Side Effects and Adverse Reactions","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D064420","descriptor_name":"Drug-Related Side Effects and Adverse Reactions","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":true},{"descriptor_ui":"D064420","descriptor_name":"Drug-Related Side Effects and Adverse Reactions","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":true},{"descriptor_ui":"D064420","descriptor_name":"Drug-Related Side Effects and Adverse Reactions","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1186/s12911-022-02085-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-022-02085-0","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/counter/pdf/10.1186/s12911-022-02085-0","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},{"id":"pmid:36550485","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36550485","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC medical informatics and decision making","raw_type":null},{"id":"pmh:oai:HAL:hal-03625190v1","is_oa":false,"landing_page_url":"https://hal.science/hal-03625190","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"2022","raw_type":"info:eu-repo/semantics/preprint"},{"id":"pmh:oai:doaj.org/article:e77bc466270f4498a9df7b2c803ce673","is_oa":true,"landing_page_url":"https://doaj.org/article/e77bc466270f4498a9df7b2c803ce673","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Medical Informatics and Decision Making, Vol 22, Iss 1, Pp 1-16 (2022)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9773506","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9773506","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Med Inform Decis Mak","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12911-022-02085-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-022-02085-0","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/counter/pdf/10.1186/s12911-022-02085-0","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5699999928474426,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4290094205.pdf","grobid_xml":"https://content.openalex.org/works/W4290094205.grobid-xml"},"referenced_works_count":27,"referenced_works":["https://openalex.org/W2019453867","https://openalex.org/W2099964107","https://openalex.org/W2129767020","https://openalex.org/W2132068911","https://openalex.org/W2138768461","https://openalex.org/W2153401380","https://openalex.org/W2164105883","https://openalex.org/W2184378182","https://openalex.org/W2763634892","https://openalex.org/W2900788028","https://openalex.org/W2905878876","https://openalex.org/W2911489562","https://openalex.org/W2912844415","https://openalex.org/W2922435955","https://openalex.org/W2963716420","https://openalex.org/W2966852993","https://openalex.org/W2970771982","https://openalex.org/W2971258845","https://openalex.org/W2974004142","https://openalex.org/W2980138027","https://openalex.org/W2981668055","https://openalex.org/W2990043529","https://openalex.org/W3008736151","https://openalex.org/W3096403953","https://openalex.org/W3111278950","https://openalex.org/W6601375265","https://openalex.org/W6702248584"],"related_works":["https://openalex.org/W2125179413","https://openalex.org/W2719570687","https://openalex.org/W2894377005","https://openalex.org/W2066240751","https://openalex.org/W3120767282","https://openalex.org/W2898439368","https://openalex.org/W2094484004","https://openalex.org/W3128299827","https://openalex.org/W2181320814","https://openalex.org/W3105953293"],"abstract_inverted_index":{"INTRODUCTION:":[0],"Detecting":[1],"safety":[2,127,250],"signals":[3,128],"attributed":[4],"to":[5,34,71,95,198,223,234,246,285],"a":[6,12,56,87,90,123,135,144,150,155,178,183,199,213,240,301],"drug":[7,275],"in":[8,15,20,32,129,162,263],"scientific":[9],"literature":[10,279],"is":[11,45,70,114],"fundamental":[13],"issue":[14],"pharmacovigilance.":[16],"The":[17,65,105],"constant":[18],"increase":[19],"the":[21,26,41,96,130,147,187,204,217,225,229,255,259,278],"volume":[22],"of":[23,28,59,67,102,126,152,157,185,189,206,219,272],"publications":[24,81],"requires":[25],"automation":[27],"this":[29,68,264],"tedious":[30],"task,":[31],"order":[33],"find":[35],"and":[36,89,143,154,195,231,248,258,269,280,293],"extract":[37],"relevant":[38,80,190],"articles":[39,163],"from":[40,139,165,277],"pack.":[42],"This":[43],"task":[44],"critical,":[46],"as":[47],"serious":[48,273],"Adverse":[49,92,307],"Drug":[50,88,308],"Reactions":[51],"(ADRs)":[52],"still":[53],"account":[54],"for":[55,77,267,305],"large":[57],"number":[58,188],"hospital":[60],"admissions":[61],"each":[62],"year.":[63],"OBJECTIVES:":[64],"aim":[66],"study":[69],"develop":[72],"an":[73,83],"augmented":[74],"intelligence":[75],"methodology":[76],"automatically":[78],"identifying":[79],"mentioning":[82],"established":[84],"link":[85],"between":[86],"Serious":[91,306],"Event,":[93],"according":[94],"European":[97],"Medicines":[98],"Agency":[99],"(EMA)":[100],"definition":[101],"seriousness.":[103],"METHODS:":[104],"proposed":[106,262],"pipeline,":[107],"called":[108],"LiSA":[109],"(for":[110],"Literature":[111],"Search":[112],"Application),":[113],"based":[115],"on":[116,211],"three":[117],"independent":[118],"deep":[119],"learning":[120],"models":[121],"supporting":[122],"precise":[124],"detection":[125],"biomedical":[131],"literature.":[132],"By":[133],"combining":[134],"Bidirectional":[136],"Encoder":[137],"Representations":[138],"Transformers":[140],"(BERT)":[141],"algorithms":[142],"modular":[145,214],"architecture,":[146],"pipeline":[148,215,257],"achieves":[149],"precision":[151],"0.81":[153],"recall":[156],"0.89":[158],"at":[159],"sentences":[160],"level":[161],"extracted":[164],"PubMed":[166],"(either":[167],"abstract":[168],"or":[169],"full-text).":[170],"We":[171],"also":[172,299],"measured":[173],"that":[174],"by":[175,182,228],"using":[176],"LiSA,":[177],"medical":[179],"reviewer":[180],"increases":[181],"factor":[184],"2.5":[186],"documents":[191],"it":[192,233],"can":[193,281],"collect":[194],"evaluate":[196],"compared":[197],"simple":[200],"keyword":[201],"search.":[202],"In":[203,238],"interest":[205],"re-usability,":[207],"emphasis":[208],"was":[209,244],"placed":[210],"building":[212],"allowing":[216],"insertion":[218],"other":[220,235,295],"NLP":[221],"modules":[222],"enrich":[224],"results":[226],"provided":[227],"system,":[230],"extend":[232],"use":[236,288],"cases.":[237,289],"addition,":[239],"lightweight":[241],"visualization":[242,260],"tool":[243,261],"developed":[245],"analyze":[247],"monitor":[249],"signal":[251],"results.":[252],"CONCLUSIONS:":[253],"Overall,":[254],"generic":[256],"article":[265],"allows":[266],"efficient":[268],"accurate":[270],"monitoring":[271],"adverse":[274],"reactions":[276],"easily":[282],"be":[283],"adapted":[284],"similar":[286],"pharmacovigilance":[287],"To":[290],"facilitate":[291],"reproducibility":[292],"benefit":[294],"research":[296],"studies,":[297],"we":[298],"shared":[300],"first":[302],"benchmark":[303],"dataset":[304],"Events":[309],"detection.":[310]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":5}],"updated_date":"2026-07-02T09:51:11.867554","created_date":"2025-10-10T00:00:00"}
