{"id":"https://openalex.org/W4297377503","doi":"https://doi.org/10.1186/s12911-022-01996-2","title":"Identify diabetic retinopathy-related clinical concepts and their attributes using transformer-based natural language processing methods","display_name":"Identify diabetic retinopathy-related clinical concepts and their attributes using transformer-based natural language processing methods","publication_year":2022,"publication_date":"2022-09-27","ids":{"openalex":"https://openalex.org/W4297377503","doi":"https://doi.org/10.1186/s12911-022-01996-2","pmid":"https://pubmed.ncbi.nlm.nih.gov/36167551"},"language":"en","primary_location":{"id":"doi:10.1186/s12911-022-01996-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-022-01996-2","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/counter/pdf/10.1186/s12911-022-01996-2","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcmedinformdecismak.biomedcentral.com/counter/pdf/10.1186/s12911-022-01996-2","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5086486425","display_name":"Zehao Yu","orcid":"https://orcid.org/0000-0002-7290-8005"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zehao Yu","raw_affiliation_strings":["Department of Health Outcomes and Biomedical Informatics, College of Medicine, University of Florida, Gainesville, FL, USA"],"raw_orcid":"https://orcid.org/0000-0002-7290-8005","affiliations":[{"raw_affiliation_string":"Department of Health Outcomes and Biomedical Informatics, College of Medicine, University of Florida, Gainesville, FL, USA","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103133745","display_name":"Xi Yang","orcid":"https://orcid.org/0000-0003-2981-3972"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xi Yang","raw_affiliation_strings":["Department of Health Outcomes and Biomedical Informatics, College of Medicine, University of Florida, Gainesville, FL, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Health Outcomes and Biomedical Informatics, College of Medicine, University of Florida, Gainesville, FL, USA","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089455423","display_name":"Gianna L. Sweeting","orcid":null},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gianna L. Sweeting","raw_affiliation_strings":["Department of Biomedical Engineering, College of Engineering, University of Florida, Gainesville, FL, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, College of Engineering, University of Florida, Gainesville, FL, USA","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039308499","display_name":"Yinghan Ma","orcid":"https://orcid.org/0000-0002-4914-641X"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yinghan Ma","raw_affiliation_strings":["Department of Health Outcomes and Biomedical Informatics, College of Medicine, University of Florida, Gainesville, FL, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Health Outcomes and Biomedical Informatics, College of Medicine, University of Florida, Gainesville, FL, USA","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025624636","display_name":"Skylar E. Stolte","orcid":"https://orcid.org/0000-0002-9300-1322"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Skylar E. Stolte","raw_affiliation_strings":["Department of Biomedical Engineering, College of Engineering, University of Florida, Gainesville, FL, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, College of Engineering, University of Florida, Gainesville, FL, USA","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007109351","display_name":"Ruogu Fang","orcid":"https://orcid.org/0000-0003-3980-3532"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ruogu Fang","raw_affiliation_strings":["Department of Biomedical Engineering, College of Engineering, University of Florida, Gainesville, FL, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, College of Engineering, University of Florida, Gainesville, FL, USA","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5010253402","display_name":"Yonghui Wu","orcid":"https://orcid.org/0000-0002-6780-6135"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]},{"id":"https://openalex.org/I94062374","display_name":"Florida College","ror":"https://ror.org/010bgev76","country_code":"US","type":"education","lineage":["https://openalex.org/I94062374"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Yonghui Wu","raw_affiliation_strings":["Department of Health Outcomes and Biomedical Informatics, College of Medicine, University of Florida, Gainesville, FL, USA. yonghui.wu@ufl.edu","Department of Health Outcomes and Biomedical Informatics, College of Medicine, University of Florida, Gainesville, FL, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Health Outcomes and Biomedical Informatics, College of Medicine, University of Florida, Gainesville, FL, USA. yonghui.wu@ufl.edu","institution_ids":["https://openalex.org/I94062374"]},{"raw_affiliation_string":"Department of Health Outcomes and Biomedical Informatics, College of Medicine, University of Florida, Gainesville, FL, USA","institution_ids":["https://openalex.org/I33213144"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5010253402"],"corresponding_institution_ids":["https://openalex.org/I33213144","https://openalex.org/I94062374"],"apc_list":{"value":2690,"currency":"USD","value_usd":2690},"apc_paid":{"value":2690,"currency":"USD","value_usd":2690},"fwci":1.4312,"has_fulltext":true,"cited_by_count":14,"citation_normalized_percentile":{"value":0.80461626,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"22","issue":"S3","first_page":"255","last_page":"255"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11438","display_name":"Retinal Imaging and Analysis","score":0.8065000176429749,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11438","display_name":"Retinal Imaging and Analysis","score":0.8065000176429749,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10170","display_name":"Retinal Diseases and Treatments","score":0.0737999975681305,"subfield":{"id":"https://openalex.org/subfields/2731","display_name":"Ophthalmology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11714","display_name":"Multimodal Machine Learning Applications","score":0.014999999664723873,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/diabetic-retinopathy","display_name":"Diabetic retinopathy","score":0.6714812517166138},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.650668203830719},{"id":"https://openalex.org/keywords/health-informatics","display_name":"Health informatics","score":0.5818463563919067},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.4563196301460266},{"id":"https://openalex.org/keywords/natural-language","display_name":"Natural language","score":0.43651673197746277},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.37341850996017456},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.37191087007522583},{"id":"https://openalex.org/keywords/diabetes-mellitus","display_name":"Diabetes mellitus","score":0.2661108076572418},{"id":"https://openalex.org/keywords/public-health","display_name":"Public health","score":0.12210005521774292},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.11040455102920532}],"concepts":[{"id":"https://openalex.org/C2779829184","wikidata":"https://www.wikidata.org/wiki/Q631361","display_name":"Diabetic retinopathy","level":3,"score":0.6714812517166138},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.650668203830719},{"id":"https://openalex.org/C145642194","wikidata":"https://www.wikidata.org/wiki/Q870895","display_name":"Health informatics","level":3,"score":0.5818463563919067},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.4563196301460266},{"id":"https://openalex.org/C195324797","wikidata":"https://www.wikidata.org/wiki/Q33742","display_name":"Natural language","level":2,"score":0.43651673197746277},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.37341850996017456},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.37191087007522583},{"id":"https://openalex.org/C555293320","wikidata":"https://www.wikidata.org/wiki/Q12206","display_name":"Diabetes mellitus","level":2,"score":0.2661108076572418},{"id":"https://openalex.org/C138816342","wikidata":"https://www.wikidata.org/wiki/Q189603","display_name":"Public health","level":2,"score":0.12210005521774292},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.11040455102920532},{"id":"https://openalex.org/C134018914","wikidata":"https://www.wikidata.org/wiki/Q162606","display_name":"Endocrinology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001766","descriptor_name":"Blindness","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001766","descriptor_name":"Blindness","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001766","descriptor_name":"Blindness","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001766","descriptor_name":"Blindness","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001766","descriptor_name":"Blindness","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001766","descriptor_name":"Blindness","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003920","descriptor_name":"Diabetes Mellitus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003920","descriptor_name":"Diabetes Mellitus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003920","descriptor_name":"Diabetes Mellitus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003920","descriptor_name":"Diabetes Mellitus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003920","descriptor_name":"Diabetes Mellitus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003920","descriptor_name":"Diabetes Mellitus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003930","descriptor_name":"Diabetic Retinopathy","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D003930","descriptor_name":"Diabetic Retinopathy","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D003930","descriptor_name":"Diabetic Retinopathy","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D003930","descriptor_name":"Diabetic Retinopathy","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D003930","descriptor_name":"Diabetic Retinopathy","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D003930","descriptor_name":"Diabetic Retinopathy","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12911-022-01996-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-022-01996-2","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/counter/pdf/10.1186/s12911-022-01996-2","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},{"id":"pmid:36167551","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36167551","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC medical informatics and decision making","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9513862","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9513862","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Med Inform Decis Mak","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:3152905f9d234523ab14206a1f5dc1dc","is_oa":false,"landing_page_url":"https://doaj.org/article/3152905f9d234523ab14206a1f5dc1dc","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Medical Informatics and Decision Making, Vol 22, Iss S3, Pp 1-9 (2022)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s12911-022-01996-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-022-01996-2","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/counter/pdf/10.1186/s12911-022-01996-2","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1419835852","display_name":null,"funder_award_id":"R56AG069880","funder_id":"https://openalex.org/F4320337337","funder_display_name":"National Institute on Aging"},{"id":"https://openalex.org/G2203661487","display_name":null,"funder_award_id":"1R56AG 069880","funder_id":"https://openalex.org/F4320337337","funder_display_name":"National Institute on Aging"},{"id":"https://openalex.org/G4691473461","display_name":null,"funder_award_id":"ME-2018C3-14754","funder_id":"https://openalex.org/F4320308927","funder_display_name":"Patient-Centered Outcomes Research Institute"},{"id":"https://openalex.org/G8632499170","display_name":null,"funder_award_id":"00129436","funder_id":"https://openalex.org/F4320306532","funder_display_name":"University of Florida Foundation"}],"funders":[{"id":"https://openalex.org/F4320306532","display_name":"University of Florida Foundation","ror":"https://ror.org/02y3ad647"},{"id":"https://openalex.org/F4320308927","display_name":"Patient-Centered Outcomes Research Institute","ror":"https://ror.org/014q65q44"},{"id":"https://openalex.org/F4320309480","display_name":"Nvidia","ror":"https://ror.org/03jdj4y14"},{"id":"https://openalex.org/F4320337337","display_name":"National Institute on Aging","ror":"https://ror.org/049v75w11"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4297377503.pdf","grobid_xml":"https://content.openalex.org/works/W4297377503.grobid-xml"},"referenced_works_count":35,"referenced_works":["https://openalex.org/W1737136247","https://openalex.org/W1966976587","https://openalex.org/W2032687008","https://openalex.org/W2089698565","https://openalex.org/W2097207403","https://openalex.org/W2121879602","https://openalex.org/W2139865360","https://openalex.org/W2169961704","https://openalex.org/W2396881363","https://openalex.org/W2529518929","https://openalex.org/W2738328909","https://openalex.org/W2787045460","https://openalex.org/W2789244308","https://openalex.org/W2805647315","https://openalex.org/W2809489644","https://openalex.org/W2906455801","https://openalex.org/W2907265599","https://openalex.org/W2946387978","https://openalex.org/W2962784628","https://openalex.org/W2975249097","https://openalex.org/W2979826702","https://openalex.org/W2993961432","https://openalex.org/W3028131704","https://openalex.org/W3030645549","https://openalex.org/W3095092693","https://openalex.org/W3095642204","https://openalex.org/W3101095342","https://openalex.org/W3105892552","https://openalex.org/W3109225475","https://openalex.org/W4294214983","https://openalex.org/W6600480908","https://openalex.org/W6601013545","https://openalex.org/W6601037301","https://openalex.org/W6601324878","https://openalex.org/W6702248584"],"related_works":["https://openalex.org/W3203337527","https://openalex.org/W2044207570","https://openalex.org/W4244634705","https://openalex.org/W1980571360","https://openalex.org/W2912406428","https://openalex.org/W3023629149","https://openalex.org/W3204019825","https://openalex.org/W4226226396","https://openalex.org/W3153750606","https://openalex.org/W4308854837"],"abstract_inverted_index":{"BACKGROUND:":[0],"Diabetic":[1],"retinopathy":[2],"(DR)":[3],"is":[4,26,52,81],"a":[5,53,117,154],"leading":[6],"cause":[7],"of":[8,60,139,156,228,239,269],"blindness":[9],"in":[10,30,48,62,90,260],"American":[11],"adults.":[12],"If":[13],"detected,":[14],"DR":[15,39,61,72],"can":[16],"be":[17],"treated":[18],"to":[19,36,84,127,286,293],"prevent":[20],"further":[21],"damage":[22],"causing":[23],"blindness.":[24],"There":[25],"an":[27],"increasing":[28],"interest":[29],"developing":[31],"artificial":[32],"intelligence":[33],"(AI)":[34],"technologies":[35],"help":[37,58],"detect":[38],"using":[40,122,219,290,307],"electronic":[41],"health":[42],"records.":[43],"The":[44,230],"lesion-related":[45,87],"information":[46,88],"documented":[47],"fundus":[49],"image":[50,94,158],"reports":[51],"valuable":[54],"resource":[55],"that":[56,283],"could":[57],"diagnoses":[59,73],"clinical":[63,132,141,166,274,291,298],"decision":[64],"support":[65],"systems.":[66],"However,":[67],"most":[68],"studies":[69,83],"for":[70,165,210,273,297,302],"AI-based":[71],"are":[74],"mainly":[75],"based":[76,247],"on":[77,248],"medical":[78],"images;":[79],"there":[80],"limited":[82],"explore":[85],"the":[86,91,175,194,199,204,224,235,249,255,267,295],"captured":[89],"free":[92],"text":[93,222,292,310],"reports.":[95],"METHODS:":[96],"In":[97],"this":[98],"study,":[99],"we":[100],"examined":[101,174],"two":[102,179],"state-of-the-art":[103],"transformer-based":[104,162,270],"natural":[105],"language":[106],"processing":[107],"(NLP)":[108],"models,":[109],"including":[110,143,181],"BERT":[111,195,216],"and":[112,148,160,169,208,241,277],"RoBERTa,":[113],"compared":[114],"them":[115],"with":[116,198],"recurrent":[118],"neural":[119],"network":[120],"implemented":[121],"Long":[123],"short-term":[124],"memory":[125],"(LSTM)":[126],"extract":[128],"DR-related":[129,140],"concepts":[130,142,185],"from":[131],"narratives.":[133],"We":[134,172],"identified":[135],"four":[136],"different":[137],"categories":[138],"lesions,":[144],"eye":[145],"parts,":[146],"laterality,":[147],"severity,":[149],"developed":[150,161],"annotation":[151],"guidelines,":[152],"annotated":[153],"DR-corpus":[155],"536":[157],"reports,":[159],"NLP":[163,271],"models":[164,272,289],"concept":[167,192,275,299],"extraction":[168,177,276],"relation":[170,176,214,278,303],"extraction.":[171,279,300],"also":[173,253],"under":[178],"settings":[180],"'gold-standard'":[182],"setting-where":[183],"gold-standard":[184],"were":[186],"used-and":[187],"end-to-end":[188,231,245],"setting.":[189],"RESULTS:":[190],"For":[191,213],"extraction,":[193,215,304],"model":[196,217],"pretrained":[197,218,306],"MIMIC":[200],"III":[201],"dataset":[202],"achieve":[203],"best":[205,225,236],"performance":[206,257,296],"(0.9503":[207],"0.9645":[209],"strict/lenient":[211,226,237],"evaluation).":[212],"general":[220,308],"English":[221,309],"achieved":[223,234,254],"F1-score":[227,238],"0.9316.":[229],"system,":[232],"BERT_general_e2e,":[233],"0.8578":[240],"0.8881,":[242],"respectively.":[243],"Another":[244],"system":[246],"RoBERTa":[250],"architecture,":[251],"RoBERTa_general_e2e,":[252],"same":[256],"as":[258],"BERT_general_e2e":[259],"strict":[261],"scores.":[262],"CONCLUSIONS:":[263],"This":[264],"study":[265],"demonstrated":[266],"efficiency":[268],"Our":[280],"results":[281],"show":[282],"it's":[284],"necessary":[285],"pretrain":[287],"transformer":[288],"optimize":[294],"Whereas,":[301],"transformers":[305],"perform":[311],"better.":[312]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":3}],"updated_date":"2026-08-11T07:18:39.950985","created_date":"2025-10-10T00:00:00"}
