{"id":"https://openalex.org/W4288429392","doi":"https://doi.org/10.1186/s12911-022-01927-1","title":"PheNominal: an EHR-integrated web application for structured deep phenotyping at the point of care","display_name":"PheNominal: an EHR-integrated web application for structured deep phenotyping at the point of care","publication_year":2022,"publication_date":"2022-07-28","ids":{"openalex":"https://openalex.org/W4288429392","doi":"https://doi.org/10.1186/s12911-022-01927-1","pmid":"https://pubmed.ncbi.nlm.nih.gov/35902925"},"language":"en","primary_location":{"id":"doi:10.1186/s12911-022-01927-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-022-01927-1","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/counter/pdf/10.1186/s12911-022-01927-1","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcmedinformdecismak.biomedcentral.com/counter/pdf/10.1186/s12911-022-01927-1","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5071887502","display_name":"James M. Havrilla","orcid":"https://orcid.org/0000-0002-8388-1362"},"institutions":[{"id":"https://openalex.org/I1335321130","display_name":"Children's Hospital of Philadelphia","ror":"https://ror.org/01z7r7q48","country_code":"US","type":"funder","lineage":["https://openalex.org/I1335321130"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"James M. Havrilla","raw_affiliation_strings":["Center for Cellular and Molecular Therapeutics, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA"],"raw_orcid":"https://orcid.org/0000-0002-8388-1362","affiliations":[{"raw_affiliation_string":"Center for Cellular and Molecular Therapeutics, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA","institution_ids":["https://openalex.org/I1335321130"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041993590","display_name":"Anbumalar Singaravelu","orcid":null},"institutions":[{"id":"https://openalex.org/I1335321130","display_name":"Children's Hospital of Philadelphia","ror":"https://ror.org/01z7r7q48","country_code":"US","type":"funder","lineage":["https://openalex.org/I1335321130"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Anbumalar Singaravelu","raw_affiliation_strings":["Emerging Technology and Transformation Team, Information Services, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Emerging Technology and Transformation Team, Information Services, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA","institution_ids":["https://openalex.org/I1335321130"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058455470","display_name":"Dennis M. Driscoll","orcid":null},"institutions":[{"id":"https://openalex.org/I1335321130","display_name":"Children's Hospital of Philadelphia","ror":"https://ror.org/01z7r7q48","country_code":"US","type":"funder","lineage":["https://openalex.org/I1335321130"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dennis M. Driscoll","raw_affiliation_strings":["Emerging Technology and Transformation Team, Information Services, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Emerging Technology and Transformation Team, Information Services, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA","institution_ids":["https://openalex.org/I1335321130"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024016555","display_name":"Leonard Minkovsky","orcid":null},"institutions":[{"id":"https://openalex.org/I1335321130","display_name":"Children's Hospital of Philadelphia","ror":"https://ror.org/01z7r7q48","country_code":"US","type":"funder","lineage":["https://openalex.org/I1335321130"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Leonard Minkovsky","raw_affiliation_strings":["Emerging Technology and Transformation Team, Information Services, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Emerging Technology and Transformation Team, Information Services, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA","institution_ids":["https://openalex.org/I1335321130"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102859760","display_name":"Ingo Helbig","orcid":"https://orcid.org/0000-0001-8486-0558"},"institutions":[{"id":"https://openalex.org/I1335321130","display_name":"Children's Hospital of Philadelphia","ror":"https://ror.org/01z7r7q48","country_code":"US","type":"funder","lineage":["https://openalex.org/I1335321130"]},{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ingo Helbig","raw_affiliation_strings":["Department of Biomedical and Health Informatics, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA","Department of Neurology, University of Pennsylvania, Perelman School of Medicine, Philadelphia, PA, 19104, USA","Division of Neurology, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA","The Epilepsy NeuroGenetics Initiative (ENGIN), Children's Hospital of Philadelphia, Philadelphia, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical and Health Informatics, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA","institution_ids":["https://openalex.org/I1335321130"]},{"raw_affiliation_string":"Department of Neurology, University of Pennsylvania, Perelman School of Medicine, Philadelphia, PA, 19104, USA","institution_ids":["https://openalex.org/I79576946"]},{"raw_affiliation_string":"Division of Neurology, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA","institution_ids":["https://openalex.org/I1335321130"]},{"raw_affiliation_string":"The Epilepsy NeuroGenetics Initiative (ENGIN), Children's Hospital of Philadelphia, Philadelphia, USA","institution_ids":["https://openalex.org/I1335321130"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021259419","display_name":"L\u012bvija Medne","orcid":"https://orcid.org/0000-0002-3836-4294"},"institutions":[{"id":"https://openalex.org/I1335321130","display_name":"Children's Hospital of Philadelphia","ror":"https://ror.org/01z7r7q48","country_code":"US","type":"funder","lineage":["https://openalex.org/I1335321130"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Livija Medne","raw_affiliation_strings":["Roberts Individualized Medical Genetics Center, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Roberts Individualized Medical Genetics Center, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA","institution_ids":["https://openalex.org/I1335321130"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100437036","display_name":"Kai Wang","orcid":"https://orcid.org/0000-0002-6170-4744"},"institutions":[{"id":"https://openalex.org/I1335321130","display_name":"Children's Hospital of Philadelphia","ror":"https://ror.org/01z7r7q48","country_code":"US","type":"funder","lineage":["https://openalex.org/I1335321130"]},{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kai Wang","raw_affiliation_strings":["Center for Cellular and Molecular Therapeutics, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA","Department of Biomedical and Health Informatics, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA","Department of Pathology and Laboratory Medicine, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, 19104, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Cellular and Molecular Therapeutics, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA","institution_ids":["https://openalex.org/I1335321130"]},{"raw_affiliation_string":"Department of Biomedical and Health Informatics, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA","institution_ids":["https://openalex.org/I1335321130"]},{"raw_affiliation_string":"Department of Pathology and Laboratory Medicine, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, 19104, USA","institution_ids":["https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010801552","display_name":"Ian D. Krantz","orcid":"https://orcid.org/0000-0003-2442-1128"},"institutions":[{"id":"https://openalex.org/I1335321130","display_name":"Children's Hospital of Philadelphia","ror":"https://ror.org/01z7r7q48","country_code":"US","type":"funder","lineage":["https://openalex.org/I1335321130"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ian Krantz","raw_affiliation_strings":["Roberts Individualized Medical Genetics Center, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Roberts Individualized Medical Genetics Center, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA","institution_ids":["https://openalex.org/I1335321130"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5018219242","display_name":"Bimal R. Desai","orcid":null},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Bimal R. Desai","raw_affiliation_strings":["Department of Pediatrics, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, 19104, USA. desai@chop.edu","Department of Pediatrics, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, 19104, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pediatrics, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, 19104, USA. desai@chop.edu","institution_ids":["https://openalex.org/I79576946"]},{"raw_affiliation_string":"Department of Pediatrics, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, 19104, USA","institution_ids":["https://openalex.org/I79576946"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5018219242"],"corresponding_institution_ids":["https://openalex.org/I79576946"],"apc_list":{"value":1570,"currency":"GBP","value_usd":1925},"apc_paid":{"value":1570,"currency":"GBP","value_usd":1925},"fwci":2.7963,"has_fulltext":true,"cited_by_count":18,"citation_normalized_percentile":{"value":0.91005078,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"22","issue":"S2","first_page":"198","last_page":"198"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.5511000156402588,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.5511000156402588,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.4165000021457672,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10350","display_name":"Electronic Health Records Systems","score":0.0210999995470047,"subfield":{"id":"https://openalex.org/subfields/3605","display_name":"Health Information Management"},"field":{"id":"https://openalex.org/fields/36","display_name":"Health Professions"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.750558614730835},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6332250833511353},{"id":"https://openalex.org/keywords/health-informatics","display_name":"Health informatics","score":0.5212991237640381},{"id":"https://openalex.org/keywords/web-service","display_name":"Web service","score":0.48090481758117676},{"id":"https://openalex.org/keywords/point-of-care","display_name":"Point of care","score":0.4778594374656677},{"id":"https://openalex.org/keywords/clinical-decision-support-system","display_name":"Clinical decision support system","score":0.4489148259162903},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3936285674571991},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3465469479560852},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.31325891613960266},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.3016092777252197},{"id":"https://openalex.org/keywords/decision-support-system","display_name":"Decision support system","score":0.30064570903778076},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.22370830178260803},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.13208767771720886}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.750558614730835},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6332250833511353},{"id":"https://openalex.org/C145642194","wikidata":"https://www.wikidata.org/wiki/Q870895","display_name":"Health informatics","level":3,"score":0.5212991237640381},{"id":"https://openalex.org/C35578498","wikidata":"https://www.wikidata.org/wiki/Q193424","display_name":"Web service","level":2,"score":0.48090481758117676},{"id":"https://openalex.org/C51915194","wikidata":"https://www.wikidata.org/wiki/Q17075487","display_name":"Point of care","level":2,"score":0.4778594374656677},{"id":"https://openalex.org/C63527458","wikidata":"https://www.wikidata.org/wiki/Q5133829","display_name":"Clinical decision support system","level":3,"score":0.4489148259162903},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3936285674571991},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3465469479560852},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.31325891613960266},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.3016092777252197},{"id":"https://openalex.org/C107327155","wikidata":"https://www.wikidata.org/wiki/Q330268","display_name":"Decision support system","level":2,"score":0.30064570903778076},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.22370830178260803},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.13208767771720886},{"id":"https://openalex.org/C138816342","wikidata":"https://www.wikidata.org/wiki/Q189603","display_name":"Public health","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D002648","descriptor_name":"Child","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002648","descriptor_name":"Child","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002648","descriptor_name":"Child","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019095","descriptor_name":"Point-of-Care Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019095","descriptor_name":"Point-of-Care Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019095","descriptor_name":"Point-of-Care Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12911-022-01927-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-022-01927-1","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/counter/pdf/10.1186/s12911-022-01927-1","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},{"id":"pmid:35902925","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35902925","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC medical informatics and decision making","raw_type":null},{"id":"pmh:oai:doaj.org/article:b0546970c04e479ab07099cc93034dd6","is_oa":true,"landing_page_url":"https://doaj.org/article/b0546970c04e479ab07099cc93034dd6","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Medical Informatics and Decision Making, Vol 22, Iss S2, Pp 1-12 (2022)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9335954","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9335954","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Med Inform Decis Mak","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12911-022-01927-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-022-01927-1","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/counter/pdf/10.1186/s12911-022-01927-1","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education","score":0.7300000190734863}],"awards":[{"id":"https://openalex.org/G1311111775","display_name":null,"funder_award_id":"P50 HD105354","funder_id":"https://openalex.org/F4320309370","funder_display_name":"University of Pennsylvania"},{"id":"https://openalex.org/G1998495554","display_name":null,"funder_award_id":"LM012895","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2178206400","display_name":null,"funder_award_id":"GM132713","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3894653020","display_name":null,"funder_award_id":"HD105354","funder_id":"https://openalex.org/F4320337364","funder_display_name":"National Institute of Child Health and Human Development"},{"id":"https://openalex.org/G444853224","display_name":null,"funder_award_id":"HD105354","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5023479862","display_name":null,"funder_award_id":"P50 HD105354","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5593215212","display_name":null,"funder_award_id":"P50 HD105354","funder_id":"https://openalex.org/F4320332591","funder_display_name":"Intellectual and Developmental Disabilities Research Center"},{"id":"https://openalex.org/G584935116","display_name":null,"funder_award_id":"GM132713","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G895422422","display_name":null,"funder_award_id":"LM012895","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"}],"funders":[{"id":"https://openalex.org/F4320309099","display_name":"Children's Hospital of Philadelphia","ror":"https://ror.org/01z7r7q48"},{"id":"https://openalex.org/F4320309370","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320332591","display_name":"Intellectual and Developmental Disabilities Research Center","ror":"https://ror.org/02pttbw34"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"},{"id":"https://openalex.org/F4320337364","display_name":"National Institute of Child Health and Human Development","ror":"https://ror.org/04byxyr05"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4288429392.pdf","grobid_xml":"https://content.openalex.org/works/W4288429392.grobid-xml"},"referenced_works_count":58,"referenced_works":["https://openalex.org/W90362830","https://openalex.org/W954754213","https://openalex.org/W1520854625","https://openalex.org/W1593089476","https://openalex.org/W1598801177","https://openalex.org/W1902526473","https://openalex.org/W1979945892","https://openalex.org/W2025464337","https://openalex.org/W2048612925","https://openalex.org/W2054542377","https://openalex.org/W2055032549","https://openalex.org/W2057706627","https://openalex.org/W2059313072","https://openalex.org/W2069303969","https://openalex.org/W2089903000","https://openalex.org/W2100407705","https://openalex.org/W2107580398","https://openalex.org/W2113123047","https://openalex.org/W2121382432","https://openalex.org/W2127006085","https://openalex.org/W2136410628","https://openalex.org/W2137518425","https://openalex.org/W2143887298","https://openalex.org/W2154866190","https://openalex.org/W2157970897","https://openalex.org/W2158939484","https://openalex.org/W2159092541","https://openalex.org/W2161360183","https://openalex.org/W2317166242","https://openalex.org/W2405275595","https://openalex.org/W2518497748","https://openalex.org/W2557385283","https://openalex.org/W2617609986","https://openalex.org/W2763028672","https://openalex.org/W2799324424","https://openalex.org/W2808108314","https://openalex.org/W2809721358","https://openalex.org/W2901332105","https://openalex.org/W2903240400","https://openalex.org/W2911737122","https://openalex.org/W2915769855","https://openalex.org/W2930145717","https://openalex.org/W2944885503","https://openalex.org/W2946102094","https://openalex.org/W2981347686","https://openalex.org/W2989566471","https://openalex.org/W3020079156","https://openalex.org/W3027582835","https://openalex.org/W3031191781","https://openalex.org/W3040340647","https://openalex.org/W3046999130","https://openalex.org/W3048217406","https://openalex.org/W3089704999","https://openalex.org/W3106811464","https://openalex.org/W4211134077","https://openalex.org/W4237381349","https://openalex.org/W6713841166","https://openalex.org/W7014434172"],"related_works":["https://openalex.org/W2743915337","https://openalex.org/W4245848028","https://openalex.org/W2046929026","https://openalex.org/W2779278343","https://openalex.org/W2533987749","https://openalex.org/W1996434451","https://openalex.org/W1569026615","https://openalex.org/W2791725133","https://openalex.org/W2112831187","https://openalex.org/W2122149485"],"abstract_inverted_index":{"BACKGROUND:":[0],"Clinical":[1],"phenotype":[2,58,128,218,259],"information":[3],"greatly":[4],"facilitates":[5],"genetic":[6,145],"diagnostic":[7,111,146,251],"interpretations":[8],"pipelines":[9],"in":[10,103,109,220,264],"disease.":[11],"While":[12],"post-hoc":[13],"extraction":[14],"using":[15,203,237],"natural":[16],"language":[17],"processing":[18],"on":[19],"unstructured":[20],"clinical":[21,104,228],"notes":[22,105],"continues":[23],"to":[24,30,53,78,125,167,174,184,215,243],"improve,":[25],"there":[26,190],"is":[27],"a":[28,41,71,144,150,168,178,209,221,226,234],"need":[29],"improve":[31],"point-of-care":[32,42],"collection":[33],"of":[34,56,158,200,212],"patient":[35,179],"phenotypes.":[36],"Therefore,":[37],"we":[38,69],"developed":[39,70],"\"PheNominal\",":[40],"web":[43,63,73],"application,":[44],"embedded":[45],"within":[46,66,96,149,225],"Epic":[47],"electronic":[48],"health":[49],"record":[50],"(EHR)":[51],"workflows,":[52],"permit":[54],"capture":[55,126,219],"standardized":[57],"data.":[59],"METHODS:":[60],"Using":[61],"bi-directional":[62],"services":[64],"available":[65],"commercial":[67],"EHRs,":[68],"lightweight":[72],"application":[74,204,211],"that":[75],"allows":[76],"users":[77],"rapidly":[79],"browse":[80],"and":[81,112,134,140,189,252,261],"identify":[82],"relevant":[83],"terms":[84,92,137,161,176],"from":[85,182],"the":[86,97,117,171],"Human":[87],"Phenotype":[88],"Ontology":[89],"(HPO).":[90],"Selected":[91],"are":[93],"saved":[94],"discretely":[95],"patient's":[98],"EHR,":[99],"permitting":[100],"reuse":[101],"both":[102],"as":[106,108],"well":[107],"downstream":[110],"research":[113,253],"pipelines.":[114],"RESULTS:":[115],"In":[116],"16":[118],"months":[119],"since":[120],"implementation,":[121],"PheNominal":[122],"was":[123,180],"used":[124],"discrete":[127],"data":[129,265],"for":[130,143,177,258],"over":[131],"1500":[132],"individuals":[133],"11,000":[135],"HPO":[136,160],"during":[138],"clinic":[139],"inpatient":[141],"encounters":[142],"consultation":[147],"service":[148],"quaternary-care":[151],"pediatric":[152],"academic":[153],"medical":[154],"center.":[155],"An":[156],"average":[157,172],"7":[159],"were":[162,191],"captured":[163],"per":[164,187],"patient.":[165],"Compared":[166],"manual":[169,256],"workflow,":[170],"time":[173],"enter":[175],"reduced":[181],"15":[183],"5":[185],"min":[186],"patient,":[188],"fewer":[192],"annotation":[193],"errors.":[194],"CONCLUSIONS:":[195],"Modern":[196],"EHRs":[197],"support":[198],"integration":[199],"external":[201],"applications":[202],"programming":[205],"interfaces.":[206],"We":[207,239],"describe":[208,240],"practical":[210],"these":[213],"interfaces":[214],"facilitate":[216],"deep":[217],"discrete,":[222],"structured":[223,245],"format":[224],"busy":[227],"workflow.":[229],"Future":[230],"versions":[231],"will":[232],"include":[233],"vendor-agnostic":[235],"implementation":[236],"FHIR.":[238],"pilot":[241],"efforts":[242],"integrate":[244],"phenotyping":[246],"through":[247],"controlled":[248],"dictionaries":[249],"into":[250],"pipelines,":[254],"reducing":[255,262],"effort":[257],"documentation":[260],"errors":[263],"entry.":[266]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":3}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
