{"id":"https://openalex.org/W4221122818","doi":"https://doi.org/10.1186/s12911-022-01770-4","title":"Evaluating semantic similarity methods for comparison of text-derived phenotype profiles","display_name":"Evaluating semantic similarity methods for comparison of text-derived phenotype profiles","publication_year":2022,"publication_date":"2022-02-05","ids":{"openalex":"https://openalex.org/W4221122818","doi":"https://doi.org/10.1186/s12911-022-01770-4","pmid":"https://pubmed.ncbi.nlm.nih.gov/35123470"},"language":"en","primary_location":{"id":"doi:10.1186/s12911-022-01770-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-022-01770-4","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/counter/pdf/10.1186/s12911-022-01770-4","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcmedinformdecismak.biomedcentral.com/counter/pdf/10.1186/s12911-022-01770-4","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5064709498","display_name":"Luke T. Slater","orcid":"https://orcid.org/0000-0001-9227-0670"},"institutions":[{"id":"https://openalex.org/I1308923049","display_name":"University Hospitals Birmingham NHS Foundation Trust","ror":"https://ror.org/014ja3n03","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I1308923049"]},{"id":"https://openalex.org/I4210142469","display_name":"Health Data Research UK","ror":"https://ror.org/04rtjaj74","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I4210142469"]},{"id":"https://openalex.org/I79619799","display_name":"University of Birmingham","ror":"https://ror.org/03angcq70","country_code":"GB","type":"education","lineage":["https://openalex.org/I79619799"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Luke T. Slater","raw_affiliation_strings":["College of Medical and Dental Sciences, Institute of Cancer and Genomic Sciences, University of Birmingham, Birmingham, UK. l.slater.1@bham.ac.uk","Institute of Translational Medicine, University Hospitals Birmingham, NHS Foundation Trust, Birmingham, UK. l.slater.1@bham.ac.uk","MRC Health Data Research UK (HDR UK) Midlands, Birmingham, UK. l.slater.1@bham.ac.uk","University Hospitals Birmingham NHS Foundation Trust, Edgbaston, Birmingham, UK. l.slater.1@bham.ac.uk","College of Medical and Dental Sciences, Institute of Cancer and Genomic Sciences, University of Birmingham, Birmingham, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Medical and Dental Sciences, Institute of Cancer and Genomic Sciences, University of Birmingham, Birmingham, UK. l.slater.1@bham.ac.uk","institution_ids":["https://openalex.org/I79619799"]},{"raw_affiliation_string":"Institute of Translational Medicine, University Hospitals Birmingham, NHS Foundation Trust, Birmingham, UK. l.slater.1@bham.ac.uk","institution_ids":["https://openalex.org/I1308923049"]},{"raw_affiliation_string":"MRC Health Data Research UK (HDR UK) Midlands, Birmingham, UK. l.slater.1@bham.ac.uk","institution_ids":["https://openalex.org/I4210142469"]},{"raw_affiliation_string":"University Hospitals Birmingham NHS Foundation Trust, Edgbaston, Birmingham, UK. l.slater.1@bham.ac.uk","institution_ids":["https://openalex.org/I1308923049"]},{"raw_affiliation_string":"College of Medical and Dental Sciences, Institute of Cancer and Genomic Sciences, University of Birmingham, Birmingham, UK","institution_ids":["https://openalex.org/I79619799"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081581100","display_name":"Sophie Russell","orcid":"https://orcid.org/0000-0002-8258-1579"},"institutions":[{"id":"https://openalex.org/I1308923049","display_name":"University Hospitals Birmingham NHS Foundation Trust","ror":"https://ror.org/014ja3n03","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I1308923049"]},{"id":"https://openalex.org/I79619799","display_name":"University of Birmingham","ror":"https://ror.org/03angcq70","country_code":"GB","type":"education","lineage":["https://openalex.org/I79619799"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Sophie Russell","raw_affiliation_strings":["College of Medical and Dental Sciences, Institute of Cancer and Genomic Sciences, University of Birmingham, Birmingham, UK","Institute of Translational Medicine, University Hospitals Birmingham, NHS Foundation Trust, Birmingham, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Medical and Dental Sciences, Institute of Cancer and Genomic Sciences, University of Birmingham, Birmingham, UK","institution_ids":["https://openalex.org/I79619799"]},{"raw_affiliation_string":"Institute of Translational Medicine, University Hospitals Birmingham, NHS Foundation Trust, Birmingham, UK","institution_ids":["https://openalex.org/I1308923049"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006631741","display_name":"Silver Makepeace","orcid":null},"institutions":[{"id":"https://openalex.org/I1308923049","display_name":"University Hospitals Birmingham NHS Foundation Trust","ror":"https://ror.org/014ja3n03","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I1308923049"]},{"id":"https://openalex.org/I79619799","display_name":"University of Birmingham","ror":"https://ror.org/03angcq70","country_code":"GB","type":"education","lineage":["https://openalex.org/I79619799"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Silver Makepeace","raw_affiliation_strings":["College of Medical and Dental Sciences, Institute of Cancer and Genomic Sciences, University of Birmingham, Birmingham, UK","Institute of Translational Medicine, University Hospitals Birmingham, NHS Foundation Trust, Birmingham, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Medical and Dental Sciences, Institute of Cancer and Genomic Sciences, University of Birmingham, Birmingham, UK","institution_ids":["https://openalex.org/I79619799"]},{"raw_affiliation_string":"Institute of Translational Medicine, University Hospitals Birmingham, NHS Foundation Trust, Birmingham, UK","institution_ids":["https://openalex.org/I1308923049"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077961086","display_name":"Alexander Carberry","orcid":"https://orcid.org/0000-0002-2247-3656"},"institutions":[{"id":"https://openalex.org/I1308923049","display_name":"University Hospitals Birmingham NHS Foundation Trust","ror":"https://ror.org/014ja3n03","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I1308923049"]},{"id":"https://openalex.org/I79619799","display_name":"University of Birmingham","ror":"https://ror.org/03angcq70","country_code":"GB","type":"education","lineage":["https://openalex.org/I79619799"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Alexander Carberry","raw_affiliation_strings":["College of Medical and Dental Sciences, Institute of Cancer and Genomic Sciences, University of Birmingham, Birmingham, UK","Institute of Translational Medicine, University Hospitals Birmingham, NHS Foundation Trust, Birmingham, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Medical and Dental Sciences, Institute of Cancer and Genomic Sciences, University of Birmingham, Birmingham, UK","institution_ids":["https://openalex.org/I79619799"]},{"raw_affiliation_string":"Institute of Translational Medicine, University Hospitals Birmingham, NHS Foundation Trust, Birmingham, UK","institution_ids":["https://openalex.org/I1308923049"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026210150","display_name":"Andreas Karwath","orcid":"https://orcid.org/0000-0002-6942-3760"},"institutions":[{"id":"https://openalex.org/I1308923049","display_name":"University Hospitals Birmingham NHS Foundation Trust","ror":"https://ror.org/014ja3n03","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I1308923049"]},{"id":"https://openalex.org/I4210142469","display_name":"Health Data Research UK","ror":"https://ror.org/04rtjaj74","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I4210142469"]},{"id":"https://openalex.org/I79619799","display_name":"University of Birmingham","ror":"https://ror.org/03angcq70","country_code":"GB","type":"education","lineage":["https://openalex.org/I79619799"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Andreas Karwath","raw_affiliation_strings":["College of Medical and Dental Sciences, Institute of Cancer and Genomic Sciences, University of Birmingham, Birmingham, UK","Institute of Translational Medicine, University Hospitals Birmingham, NHS Foundation Trust, Birmingham, UK","MRC Health Data Research UK (HDR UK) Midlands, Birmingham, UK","University Hospitals Birmingham NHS Foundation Trust, Edgbaston, Birmingham, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Medical and Dental Sciences, Institute of Cancer and Genomic Sciences, University of Birmingham, Birmingham, UK","institution_ids":["https://openalex.org/I79619799"]},{"raw_affiliation_string":"Institute of Translational Medicine, University Hospitals Birmingham, NHS Foundation Trust, Birmingham, UK","institution_ids":["https://openalex.org/I1308923049"]},{"raw_affiliation_string":"MRC Health Data Research UK (HDR UK) Midlands, Birmingham, UK","institution_ids":["https://openalex.org/I4210142469"]},{"raw_affiliation_string":"University Hospitals Birmingham NHS Foundation Trust, Edgbaston, Birmingham, UK","institution_ids":["https://openalex.org/I1308923049"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060048919","display_name":"John A. Williams","orcid":"https://orcid.org/0000-0002-0357-5454"},"institutions":[{"id":"https://openalex.org/I1308923049","display_name":"University Hospitals Birmingham NHS Foundation Trust","ror":"https://ror.org/014ja3n03","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I1308923049"]},{"id":"https://openalex.org/I79619799","display_name":"University of Birmingham","ror":"https://ror.org/03angcq70","country_code":"GB","type":"education","lineage":["https://openalex.org/I79619799"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"John A. Williams","raw_affiliation_strings":["College of Medical and Dental Sciences, Institute of Cancer and Genomic Sciences, University of Birmingham, Birmingham, UK","Institute of Translational Medicine, University Hospitals Birmingham, NHS Foundation Trust, Birmingham, UK","University Hospitals Birmingham NHS Foundation Trust, Edgbaston, Birmingham, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Medical and Dental Sciences, Institute of Cancer and Genomic Sciences, University of Birmingham, Birmingham, UK","institution_ids":["https://openalex.org/I79619799"]},{"raw_affiliation_string":"Institute of Translational Medicine, University Hospitals Birmingham, NHS Foundation Trust, Birmingham, UK","institution_ids":["https://openalex.org/I1308923049"]},{"raw_affiliation_string":"University Hospitals Birmingham NHS Foundation Trust, Edgbaston, Birmingham, UK","institution_ids":["https://openalex.org/I1308923049"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059185621","display_name":"Hilary Fanning","orcid":"https://orcid.org/0000-0001-6706-4891"},"institutions":[{"id":"https://openalex.org/I1308923049","display_name":"University Hospitals Birmingham NHS Foundation Trust","ror":"https://ror.org/014ja3n03","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I1308923049"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Hilary Fanning","raw_affiliation_strings":["Institute of Translational Medicine, University Hospitals Birmingham, NHS Foundation Trust, Birmingham, UK","University Hospitals Birmingham NHS Foundation Trust, Edgbaston, Birmingham, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Translational Medicine, University Hospitals Birmingham, NHS Foundation Trust, Birmingham, UK","institution_ids":["https://openalex.org/I1308923049"]},{"raw_affiliation_string":"University Hospitals Birmingham NHS Foundation Trust, Edgbaston, Birmingham, UK","institution_ids":["https://openalex.org/I1308923049"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042238057","display_name":"Simon Ball","orcid":"https://orcid.org/0000-0001-7410-5268"},"institutions":[{"id":"https://openalex.org/I1308923049","display_name":"University Hospitals Birmingham NHS Foundation Trust","ror":"https://ror.org/014ja3n03","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I1308923049"]},{"id":"https://openalex.org/I4210142469","display_name":"Health Data Research UK","ror":"https://ror.org/04rtjaj74","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I4210142469"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Simon Ball","raw_affiliation_strings":["Institute of Translational Medicine, University Hospitals Birmingham, NHS Foundation Trust, Birmingham, UK","MRC Health Data Research UK (HDR UK) Midlands, Birmingham, UK","University Hospitals Birmingham NHS Foundation Trust, Edgbaston, Birmingham, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Translational Medicine, University Hospitals Birmingham, NHS Foundation Trust, Birmingham, UK","institution_ids":["https://openalex.org/I1308923049"]},{"raw_affiliation_string":"MRC Health Data Research UK (HDR UK) Midlands, Birmingham, UK","institution_ids":["https://openalex.org/I4210142469"]},{"raw_affiliation_string":"University Hospitals Birmingham NHS Foundation Trust, Edgbaston, Birmingham, UK","institution_ids":["https://openalex.org/I1308923049"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043808311","display_name":"Robert Hoehndorf","orcid":"https://orcid.org/0000-0001-8149-5890"},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Robert Hoehndorf","raw_affiliation_strings":["Computational Bioscience Research Center, Computer, Electrical and Mathematical Sciences and Engineering Division, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Bioscience Research Center, Computer, Electrical and Mathematical Sciences and Engineering Division, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5089900113","display_name":"Georgios V. Gkoutos","orcid":"https://orcid.org/0000-0002-2061-091X"},"institutions":[{"id":"https://openalex.org/I1308923049","display_name":"University Hospitals Birmingham NHS Foundation Trust","ror":"https://ror.org/014ja3n03","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I1308923049"]},{"id":"https://openalex.org/I4210136696","display_name":"NIHR Surgical Reconstruction and Microbiology Research Centre","ror":"https://ror.org/042sjcz88","country_code":"GB","type":"facility","lineage":["https://openalex.org/I34931013","https://openalex.org/I4210136696"]},{"id":"https://openalex.org/I4210142469","display_name":"Health Data Research UK","ror":"https://ror.org/04rtjaj74","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I4210142469"]},{"id":"https://openalex.org/I4210162943","display_name":"NIHR Birmingham Biomedical Research Centre","ror":"https://ror.org/05ccjmp23","country_code":"GB","type":"facility","lineage":["https://openalex.org/I34931013","https://openalex.org/I4210162943"]},{"id":"https://openalex.org/I4210163415","display_name":"NIHR CRUK Experimental Cancer Medicine Centre","ror":"https://ror.org/05bfg0961","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I2802965805","https://openalex.org/I34931013","https://openalex.org/I4210163415","https://openalex.org/I43439940"]},{"id":"https://openalex.org/I79619799","display_name":"University of Birmingham","ror":"https://ror.org/03angcq70","country_code":"GB","type":"education","lineage":["https://openalex.org/I79619799"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Georgios V. Gkoutos","raw_affiliation_strings":["College of Medical and Dental Sciences, Institute of Cancer and Genomic Sciences, University of Birmingham, Birmingham, UK","Institute of Translational Medicine, University Hospitals Birmingham, NHS Foundation Trust, Birmingham, UK","MRC Health Data Research UK (HDR UK) Midlands, Birmingham, UK","NIHR Biomedical Research Centre, Birmingham, UK","NIHR Experimental Cancer Medicine Centre, Birmingham, UK","NIHR Surgical Reconstruction and Microbiology Research Centre, Birmingham, UK","University Hospitals Birmingham NHS Foundation Trust, Edgbaston, Birmingham, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Medical and Dental Sciences, Institute of Cancer and Genomic Sciences, University of Birmingham, Birmingham, UK","institution_ids":["https://openalex.org/I79619799"]},{"raw_affiliation_string":"Institute of Translational Medicine, University Hospitals Birmingham, NHS Foundation Trust, Birmingham, UK","institution_ids":["https://openalex.org/I1308923049"]},{"raw_affiliation_string":"MRC Health Data Research UK (HDR UK) Midlands, Birmingham, UK","institution_ids":["https://openalex.org/I4210142469"]},{"raw_affiliation_string":"NIHR Biomedical Research Centre, Birmingham, UK","institution_ids":["https://openalex.org/I4210162943"]},{"raw_affiliation_string":"NIHR Experimental Cancer Medicine Centre, Birmingham, UK","institution_ids":["https://openalex.org/I4210163415"]},{"raw_affiliation_string":"NIHR Surgical Reconstruction and Microbiology Research Centre, Birmingham, UK","institution_ids":["https://openalex.org/I4210136696"]},{"raw_affiliation_string":"University Hospitals Birmingham NHS Foundation Trust, Edgbaston, Birmingham, UK","institution_ids":["https://openalex.org/I1308923049"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5064709498"],"corresponding_institution_ids":["https://openalex.org/I1308923049","https://openalex.org/I4210142469","https://openalex.org/I79619799"],"apc_list":{"value":1570,"currency":"GBP","value_usd":1925},"apc_paid":{"value":1570,"currency":"GBP","value_usd":1925},"fwci":0.3604,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.6462955,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":97},"biblio":{"volume":"22","issue":"1","first_page":"33","last_page":"33"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.30820000171661377,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.30820000171661377,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.2856999933719635,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.22020000219345093,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7093660831451416},{"id":"https://openalex.org/keywords/semantic-similarity","display_name":"Semantic similarity","score":0.6691834926605225},{"id":"https://openalex.org/keywords/benchmarking","display_name":"Benchmarking","score":0.6050854921340942},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.5669534802436829},{"id":"https://openalex.org/keywords/medical-diagnosis","display_name":"Medical diagnosis","score":0.5669155120849609},{"id":"https://openalex.org/keywords/ranking","display_name":"Ranking (information retrieval)","score":0.5228853225708008},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.5000426769256592},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.47848671674728394},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4557376503944397},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.45429956912994385},{"id":"https://openalex.org/keywords/health-informatics","display_name":"Health informatics","score":0.4343809485435486},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.43146395683288574},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.35196012258529663},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.17207062244415283},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.10372373461723328}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7093660831451416},{"id":"https://openalex.org/C130318100","wikidata":"https://www.wikidata.org/wiki/Q2268914","display_name":"Semantic similarity","level":2,"score":0.6691834926605225},{"id":"https://openalex.org/C86251818","wikidata":"https://www.wikidata.org/wiki/Q816754","display_name":"Benchmarking","level":2,"score":0.6050854921340942},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.5669534802436829},{"id":"https://openalex.org/C534262118","wikidata":"https://www.wikidata.org/wiki/Q177719","display_name":"Medical diagnosis","level":2,"score":0.5669155120849609},{"id":"https://openalex.org/C189430467","wikidata":"https://www.wikidata.org/wiki/Q7293293","display_name":"Ranking (information retrieval)","level":2,"score":0.5228853225708008},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.5000426769256592},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.47848671674728394},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4557376503944397},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.45429956912994385},{"id":"https://openalex.org/C145642194","wikidata":"https://www.wikidata.org/wiki/Q870895","display_name":"Health informatics","level":3,"score":0.4343809485435486},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.43146395683288574},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.35196012258529663},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.17207062244415283},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.10372373461723328},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C138816342","wikidata":"https://www.wikidata.org/wiki/Q189603","display_name":"Public health","level":2,"score":0.0},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.0},{"id":"https://openalex.org/C162853370","wikidata":"https://www.wikidata.org/wiki/Q39809","display_name":"Marketing","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035583","descriptor_name":"Rare Diseases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035583","descriptor_name":"Rare Diseases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035583","descriptor_name":"Rare Diseases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1186/s12911-022-01770-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-022-01770-4","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/counter/pdf/10.1186/s12911-022-01770-4","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},{"id":"pmid:35123470","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35123470","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC medical informatics and decision making","raw_type":null},{"id":"pmh:oai:repository.kaust.edu.sa:10754/670571","is_oa":true,"landing_page_url":"http://hdl.handle.net/10754/670571","pdf_url":"http://hdl.handle.net/10754/670571","source":{"id":"https://openalex.org/S4306401596","display_name":"King Abdullah University of Science and Technology Repository (King Abdullah University of Science and Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I71920554","host_organization_name":"King Abdullah University of Science and Technology","host_organization_lineage":["https://openalex.org/I71920554"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:doaj.org/article:b36d73867cef40daafb8dc6daff84f47","is_oa":true,"landing_page_url":"https://doaj.org/article/b36d73867cef40daafb8dc6daff84f47","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Medical Informatics and Decision Making, Vol 22, Iss 1, Pp 1-12 (2022)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:8818208","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8818208","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Med Inform Decis Mak","raw_type":"Text"},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/6b64a2f7-1409-4b7a-bb93-73ccb6d527e0","is_oa":true,"landing_page_url":"https://research.birmingham.ac.uk/en/publications/6b64a2f7-1409-4b7a-bb93-73ccb6d527e0","pdf_url":null,"source":{"id":"https://openalex.org/S4306402634","display_name":"University of Birmingham Research Portal (University of Birmingham)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I79619799","host_organization_name":"University of Birmingham","host_organization_lineage":["https://openalex.org/I79619799"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Slater, L T, Russell, S, Makepeace, S, Carberry, A, Karwath, A, Williams, J A, Fanning, H, Ball, S, Hoehndorf, R & Gkoutos, G V 2022, 'Evaluating semantic similarity methods for comparison of text-derived phenotype profiles', BMC Medical Informatics and Decision Making, vol. 22, no. 1, 33. https://doi.org/10.1186/s12911-022-01770-4","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s12911-022-01770-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-022-01770-4","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/counter/pdf/10.1186/s12911-022-01770-4","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education","score":0.6000000238418579}],"awards":[{"id":"https://openalex.org/G1374303215","display_name":null,"funder_award_id":"MR/S003991/1","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"},{"id":"https://openalex.org/G2344873991","display_name":null,"funder_award_id":"URF/1/3790-01-01","funder_id":"https://openalex.org/F4320322320","funder_display_name":"King Abdullah University of Science and Technology"},{"id":"https://openalex.org/G6036059206","display_name":null,"funder_award_id":"731032","funder_id":"https://openalex.org/F4320332999","funder_display_name":"Horizon 2020 Framework Programme"},{"id":"https://openalex.org/G7212143077","display_name":null,"funder_award_id":"HDRUK/CFC/01","funder_id":"https://openalex.org/F4320314731","funder_display_name":"UK Research and Innovation"},{"id":"https://openalex.org/G7414939125","display_name":null,"funder_award_id":"HDRUK/CFC/01","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"},{"id":"https://openalex.org/G7957584967","display_name":"Semantic-based secure infrastructure for interoperable, in-depth biomedical data and analytics","funder_award_id":"MR/S003991/1","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"},{"id":"https://openalex.org/G8585535233","display_name":null,"funder_award_id":"HDRUK/CFC/01","funder_id":"https://openalex.org/F4320319990","funder_display_name":"National Institute for Health and Care Research"}],"funders":[{"id":"https://openalex.org/F4320314731","display_name":"UK Research and Innovation","ror":"https://ror.org/001aqnf71"},{"id":"https://openalex.org/F4320319990","display_name":"National Institute for Health and Care Research","ror":"https://ror.org/0187kwz08"},{"id":"https://openalex.org/F4320319994","display_name":"Department of Health and Social Care","ror":"https://ror.org/03sbpja79"},{"id":"https://openalex.org/F4320322320","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38"},{"id":"https://openalex.org/F4320328041","display_name":"Surgical Reconstruction and Microbiology Research Centre","ror":null},{"id":"https://openalex.org/F4320332999","display_name":"Horizon 2020 Framework Programme","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320333939","display_name":"Imperial Experimental Cancer Medicine Centre","ror":null},{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"},{"id":"https://openalex.org/F4320336705","display_name":"Birmingham Biomedical Research Centre","ror":"https://ror.org/05ccjmp23"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4221122818.pdf","grobid_xml":"https://content.openalex.org/works/W4221122818.grobid-xml"},"referenced_works_count":40,"referenced_works":["https://openalex.org/W173642147","https://openalex.org/W202767273","https://openalex.org/W964851591","https://openalex.org/W1907013787","https://openalex.org/W1974896839","https://openalex.org/W2012361142","https://openalex.org/W2052477699","https://openalex.org/W2061615066","https://openalex.org/W2084168100","https://openalex.org/W2087739686","https://openalex.org/W2119412782","https://openalex.org/W2121343862","https://openalex.org/W2127006085","https://openalex.org/W2134226301","https://openalex.org/W2146495783","https://openalex.org/W2150838562","https://openalex.org/W2154851992","https://openalex.org/W2157079123","https://openalex.org/W2164290176","https://openalex.org/W2169179075","https://openalex.org/W2170282111","https://openalex.org/W2244718251","https://openalex.org/W2338910273","https://openalex.org/W2396881363","https://openalex.org/W2537776804","https://openalex.org/W2558643140","https://openalex.org/W2562531153","https://openalex.org/W2588397446","https://openalex.org/W2770044072","https://openalex.org/W2946102094","https://openalex.org/W2962756421","https://openalex.org/W2962969117","https://openalex.org/W3041230641","https://openalex.org/W3047267502","https://openalex.org/W3104097132","https://openalex.org/W3121778601","https://openalex.org/W3144777997","https://openalex.org/W3171776027","https://openalex.org/W4212881197","https://openalex.org/W4212919921"],"related_works":["https://openalex.org/W4238897586","https://openalex.org/W435179959","https://openalex.org/W2619091065","https://openalex.org/W2059640416","https://openalex.org/W1490753184","https://openalex.org/W2284465472","https://openalex.org/W2291782699","https://openalex.org/W1993948687","https://openalex.org/W2011676020","https://openalex.org/W2000169967"],"abstract_inverted_index":{"BACKGROUND:":[0],"Semantic":[1],"similarity":[2,50,144,206],"is":[3,64],"a":[4,39,94,201,224],"valuable":[5],"tool":[6],"for":[7,51,73,96,104,137,208,226],"analysis":[8],"in":[9,88,132,218,235],"biomedicine.":[10],"When":[11],"applied":[12],"to":[13,24],"phenotype":[14,71,122,216],"profiles":[15,72,123,217],"derived":[16,124],"from":[17,120,125,214],"clinical":[18,74],"text,":[19],"they":[20],"have":[21],"the":[22,46,89,109,113,133,172,198,209,236],"capacity":[23],"enable":[25],"and":[26,35,58,99,184,190,196,232],"enhance":[27],"'patient-like":[28],"me'":[29],"analyses,":[30],"automated":[31],"coding,":[32],"differential":[33,61],"diagnosis,":[34,62],"outcome":[36],"prediction.":[37],"While":[38],"large":[40,202],"body":[41],"of":[42,48,69,82,101,115,162,200,204,211],"work":[43,66],"exists":[44],"exploring":[45,67],"use":[47,161],"semantic":[49,143,205],"multiple":[52],"tasks,":[53],"including":[54],"protein":[55],"interaction":[56],"prediction,":[57],"rare":[59],"disease":[60],"there":[63,77],"less":[65],"comparison":[68,100],"patient":[70,105],"tasks.":[75],"Moreover,":[76],"are":[78],"no":[79],"experimental":[80,102],"explorations":[81],"optimal":[83],"parameters":[84],"or":[85],"better":[86],"methods":[87],"area.":[90,237],"METHODS:":[91],"We":[92,194,221],"develop":[93],"platform":[95],"reproducible":[97],"benchmarking":[98],"conditions":[103],"phentoype":[106],"similarity.":[107],"Using":[108],"platform,":[110],"we":[111],"evaluate":[112],"task":[114,210],"ranking":[116],"shared":[117],"primary":[118],"diagnosis":[119,213],"uncurated":[121],"all":[126],"text":[127],"narrative":[128],"associated":[129],"with":[130],"admissions":[131],"medical":[134],"information":[135,165],"mart":[136],"intensive":[138],"care":[139],"(MIMIC-III).":[140],"RESULTS:":[141],"300":[142],"configurations":[145,174,207],"were":[146],"evaluated,":[147],"as":[148,150],"well":[149],"one":[151,219],"embedding-based":[152],"approach.":[153],"On":[154],"average,":[155],"measures":[156],"that":[157],"did":[158],"not":[159],"make":[160],"an":[163],"external":[164],"content":[166],"measure":[167],"performed":[168],"slightly":[169],"better,":[170],"however":[171],"best-performing":[173],"when":[175],"measured":[176],"by":[177],"area":[178],"under":[179],"receiver":[180],"operating":[181],"characteristic":[182],"curve":[183],"Top":[185],"Ten":[186],"Accuracy":[187],"used":[188],"term-specificity":[189],"annotation-frequency":[191],"measures.":[192],"CONCLUSION:":[193],"identified":[195],"interpreted":[197],"performance":[199],"number":[203],"classifying":[212],"text-derived":[215],"setting.":[220],"also":[222],"provided":[223],"basis":[225],"further":[227],"research":[228],"on":[229],"other":[230],"settings":[231],"related":[233],"tasks":[234]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
