{"id":"https://openalex.org/W4206821471","doi":"https://doi.org/10.1186/s12911-022-01748-2","title":"Terminology integration and inconsistency identification of adverse event terminology for Japanese medical devices using SPARQL","display_name":"Terminology integration and inconsistency identification of adverse event terminology for Japanese medical devices using SPARQL","publication_year":2022,"publication_date":"2022-01-19","ids":{"openalex":"https://openalex.org/W4206821471","doi":"https://doi.org/10.1186/s12911-022-01748-2","pmid":"https://pubmed.ncbi.nlm.nih.gov/35042480"},"language":"en","primary_location":{"id":"doi:10.1186/s12911-022-01748-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-022-01748-2","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/track/pdf/10.1186/s12911-022-01748-2","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcmedinformdecismak.biomedcentral.com/track/pdf/10.1186/s12911-022-01748-2","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5030684308","display_name":"Ayako Yagahara","orcid":"https://orcid.org/0000-0003-3364-7719"},"institutions":[{"id":"https://openalex.org/I104234503","display_name":"Hokkaido University of Science","ror":"https://ror.org/05gqsa340","country_code":"JP","type":"education","lineage":["https://openalex.org/I104234503"]},{"id":"https://openalex.org/I163793406","display_name":"Health Sciences University of Hokkaido","ror":"https://ror.org/04tqcn816","country_code":"JP","type":"education","lineage":["https://openalex.org/I163793406"]},{"id":"https://openalex.org/I201800536","display_name":"Sapporo University","ror":"https://ror.org/04bz6gw73","country_code":"JP","type":"education","lineage":["https://openalex.org/I201800536"]},{"id":"https://openalex.org/I205349734","display_name":"Hokkaido University","ror":"https://ror.org/02e16g702","country_code":"JP","type":"education","lineage":["https://openalex.org/I205349734"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Ayako Yagahara","raw_affiliation_strings":["Faculty of Health Sciences, Hokkaido University of Science, 7-Jo 15-4-1 Maeda, Teine, Sapporo, Hokkaido, 006-8585, Japan. yagahara-a@hus.ac.jp","Faculty of Health Sciences, Hokkaido University, Sapporo, Hokkaido, Japan. yagahara-a@hus.ac.jp","Faculty of Health Sciences, Hokkaido University of Science, Sapporo, Japan","Faculty of Health Sciences, Hokkaido University, Sapporo, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Health Sciences, Hokkaido University of Science, 7-Jo 15-4-1 Maeda, Teine, Sapporo, Hokkaido, 006-8585, Japan. yagahara-a@hus.ac.jp","institution_ids":["https://openalex.org/I104234503"]},{"raw_affiliation_string":"Faculty of Health Sciences, Hokkaido University, Sapporo, Hokkaido, Japan. yagahara-a@hus.ac.jp","institution_ids":["https://openalex.org/I104234503","https://openalex.org/I163793406"]},{"raw_affiliation_string":"Faculty of Health Sciences, Hokkaido University of Science, Sapporo, Japan","institution_ids":["https://openalex.org/I104234503"]},{"raw_affiliation_string":"Faculty of Health Sciences, Hokkaido University, Sapporo, Japan","institution_ids":["https://openalex.org/I201800536","https://openalex.org/I205349734"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5049471017","display_name":"Hideto Yokoi","orcid":null},"institutions":[{"id":"https://openalex.org/I4210135297","display_name":"Kagawa University Hospital","ror":"https://ror.org/033sspj46","country_code":"JP","type":"healthcare","lineage":["https://openalex.org/I201933988","https://openalex.org/I4210135297"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Hideto Yokoi","raw_affiliation_strings":["Department of Medical Informatics, Kagawa University Hospital, Kita-gun, Kagawa, Japan","Department of Medical Informatics, Kagawa University Hospital, Kita-gun, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medical Informatics, Kagawa University Hospital, Kita-gun, Kagawa, Japan","institution_ids":["https://openalex.org/I4210135297"]},{"raw_affiliation_string":"Department of Medical Informatics, Kagawa University Hospital, Kita-gun, Japan","institution_ids":["https://openalex.org/I4210135297"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5030684308"],"corresponding_institution_ids":["https://openalex.org/I104234503","https://openalex.org/I163793406","https://openalex.org/I201800536","https://openalex.org/I205349734"],"apc_list":{"value":1570,"currency":"GBP","value_usd":1925},"apc_paid":{"value":1570,"currency":"GBP","value_usd":1925},"fwci":0.0866,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.39991797,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":98},"biblio":{"volume":"22","issue":"1","first_page":"16","last_page":"16"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9330999851226807,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9330999851226807,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12881","display_name":"linguistics and terminology studies","score":0.036400001496076584,"subfield":{"id":"https://openalex.org/subfields/1203","display_name":"Language and Linguistics"},"field":{"id":"https://openalex.org/fields/12","display_name":"Arts and Humanities"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.0024999999441206455,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/terminology","display_name":"Terminology","score":0.8456027507781982},{"id":"https://openalex.org/keywords/sparql","display_name":"SPARQL","score":0.7951620817184448},{"id":"https://openalex.org/keywords/term","display_name":"Term (time)","score":0.6882302761077881},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6367385387420654},{"id":"https://openalex.org/keywords/rdf","display_name":"RDF","score":0.6201737523078918},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5573256015777588},{"id":"https://openalex.org/keywords/matching","display_name":"Matching (statistics)","score":0.49208372831344604},{"id":"https://openalex.org/keywords/event","display_name":"Event (particle physics)","score":0.4591803252696991},{"id":"https://openalex.org/keywords/health-informatics","display_name":"Health informatics","score":0.45413926243782043},{"id":"https://openalex.org/keywords/medical-terminology","display_name":"Medical terminology","score":0.4308478534221649},{"id":"https://openalex.org/keywords/standardization","display_name":"Standardization","score":0.42944082617759705},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.4002309739589691},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.3042822480201721},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.2634689211845398},{"id":"https://openalex.org/keywords/linguistics","display_name":"Linguistics","score":0.21360793709754944},{"id":"https://openalex.org/keywords/public-health","display_name":"Public health","score":0.15853554010391235},{"id":"https://openalex.org/keywords/nursing","display_name":"Nursing","score":0.08643391728401184}],"concepts":[{"id":"https://openalex.org/C547195049","wikidata":"https://www.wikidata.org/wiki/Q1725664","display_name":"Terminology","level":2,"score":0.8456027507781982},{"id":"https://openalex.org/C41009113","wikidata":"https://www.wikidata.org/wiki/Q54871","display_name":"SPARQL","level":4,"score":0.7951620817184448},{"id":"https://openalex.org/C61797465","wikidata":"https://www.wikidata.org/wiki/Q1188986","display_name":"Term (time)","level":2,"score":0.6882302761077881},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6367385387420654},{"id":"https://openalex.org/C147497476","wikidata":"https://www.wikidata.org/wiki/Q54872","display_name":"RDF","level":3,"score":0.6201737523078918},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5573256015777588},{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.49208372831344604},{"id":"https://openalex.org/C2779662365","wikidata":"https://www.wikidata.org/wiki/Q5416694","display_name":"Event (particle physics)","level":2,"score":0.4591803252696991},{"id":"https://openalex.org/C145642194","wikidata":"https://www.wikidata.org/wiki/Q870895","display_name":"Health informatics","level":3,"score":0.45413926243782043},{"id":"https://openalex.org/C511227900","wikidata":"https://www.wikidata.org/wiki/Q1192539","display_name":"Medical terminology","level":2,"score":0.4308478534221649},{"id":"https://openalex.org/C188087704","wikidata":"https://www.wikidata.org/wiki/Q369577","display_name":"Standardization","level":2,"score":0.42944082617759705},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.4002309739589691},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.3042822480201721},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.2634689211845398},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.21360793709754944},{"id":"https://openalex.org/C138816342","wikidata":"https://www.wikidata.org/wiki/Q189603","display_name":"Public health","level":2,"score":0.15853554010391235},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.08643391728401184},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007564","descriptor_name":"Japan","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007564","descriptor_name":"Japan","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007564","descriptor_name":"Japan","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12911-022-01748-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-022-01748-2","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/track/pdf/10.1186/s12911-022-01748-2","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},{"id":"pmid:35042480","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35042480","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC medical informatics and decision making","raw_type":null},{"id":"pmh:oai:doaj.org/article:7db1fed938d1441f94739836e9d55767","is_oa":true,"landing_page_url":"https://doaj.org/article/7db1fed938d1441f94739836e9d55767","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Medical Informatics and Decision Making, Vol 22, Iss 1, Pp 1-13 (2022)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:8767687","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8767687","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Med Inform Decis Mak","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12911-022-01748-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-022-01748-2","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/track/pdf/10.1186/s12911-022-01748-2","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5,"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure"}],"awards":[{"id":"https://openalex.org/G2738773418","display_name":null,"funder_award_id":"21mk0102150h0003","funder_id":"https://openalex.org/F4320311405","funder_display_name":"Japan Agency for Medical Research and Development"}],"funders":[{"id":"https://openalex.org/F4320311405","display_name":"Japan Agency for Medical Research and Development","ror":"https://ror.org/004rtk039"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4206821471.pdf","grobid_xml":"https://content.openalex.org/works/W4206821471.grobid-xml"},"referenced_works_count":15,"referenced_works":["https://openalex.org/W1164985270","https://openalex.org/W1822004795","https://openalex.org/W1998028266","https://openalex.org/W2003018858","https://openalex.org/W2062651125","https://openalex.org/W2068737686","https://openalex.org/W2072486688","https://openalex.org/W2098175735","https://openalex.org/W2139144616","https://openalex.org/W2159151673","https://openalex.org/W2787751510","https://openalex.org/W2808081467","https://openalex.org/W2991179368","https://openalex.org/W3036018648","https://openalex.org/W3084526980"],"related_works":["https://openalex.org/W2615202182","https://openalex.org/W4206665951","https://openalex.org/W2529794967","https://openalex.org/W2904139343","https://openalex.org/W2604011835","https://openalex.org/W3139465322","https://openalex.org/W2484233589","https://openalex.org/W2528203718","https://openalex.org/W4241483715","https://openalex.org/W2768092701"],"abstract_inverted_index":{"BACKGROUND:":[0],"For":[1],"standardization":[2],"of":[3,8,47,56,98,108,129,162,166,186,218,251,268],"terms":[4,43,130,137,141,168,183,196,223],"in":[5,22,149,184,220,237],"the":[6,42,53,70,73,76,84,105,127,163,181,192,198,202,266,270],"reports":[7],"medical":[9,15,151,188],"device":[10,16,152,189],"adverse":[11,17],"events,":[12],"89":[13,26,54],"Japanese":[14],"event":[18],"terminologies":[19,27,57,179,185],"were":[20,28,80,169,245],"published":[21],"March":[23],"2015.":[24],"The":[25,45,241],"developed":[29],"independently":[30],"by":[31,260],"13":[32],"industry":[33,174],"associations,":[34],"suggesting":[35],"that":[36,176,194,224],"there":[37],"may":[38],"be":[39,208,227],"inconsistencies":[40,60,71,250],"among":[41,61,72],"proposed.":[44],"purpose":[46],"this":[48,221],"study":[49],"was":[50,110],"to":[51,68,120,139,226,248],"integrate":[52],"sets":[55],"and":[58,90,243,255,263,272],"evaluate":[59,69],"them":[62],"using":[63,211],"SPARQL.":[64],"METHODS:":[65],"In":[66,191],"order":[67,107],"integrated":[74],"terminology,":[75],"following":[77],"six":[78,216],"items":[79],"evaluated:":[81],"(1)":[82],"whether":[83,96,114,126,135,146],"two-layer":[85],"structure":[86],"between":[87],"category":[88,123],"term":[89,92,101,117,148,261],"preferred":[91,100,116,140],"is":[93,118,154,172],"consistent,":[94],"(2)":[95],"synonyms":[97,256],"a":[99,147,150],"are":[102,131,142],"involved.":[103],"Reversing":[104],"layer-category":[106],"matching":[109],"also":[111],"performed,":[112],"(3)":[113],"each":[115,238],"subordinate":[119],"only":[121],"one":[122],"term,":[124],"(4)":[125],"definitions":[128],"uniquely":[132,143],"determined,":[133,144],"(5)":[134],"CDRH-NCIt":[136],"corresponding":[138],"(6)":[145],"problem":[153],"used":[155],"for":[156,230],"patient":[157],"problems.":[158],"RESULTS:":[159],"About":[160],"60%":[161],"total":[164],"number":[165],"duplicated":[167],"found.":[170],"This":[171],"because":[173],"associations":[175],"created":[177],"multiple":[178],"adopted":[180],"same":[182,199,203],"similar":[187],"groups.":[190],"case":[193],"all":[195],"with":[197],"spelling":[200],"have":[201],"concept,":[204],"efficient":[205],"integration":[206],"can":[207],"achieved":[209],"automatically":[210],"RDF.":[212],"Furthermore,":[213],"we":[214],"evaluated":[215],"matters":[217],"inconsistency":[219],"study,":[222],"need":[225],"reviewed":[228],"accounted":[229],"about":[231],"10%":[232,236],"or":[233],"less":[234],"than":[235],"item.":[239],"CONCLUSIONS:":[240],"RDF":[242],"SPARQL":[244],"useful":[246],"tools":[247],"explore":[249],"hierarchies,":[252],"definition":[253],"statements,":[254],"when":[257],"integrating":[258],"terminolgy":[259],"notation,":[262],"these":[264],"had":[265],"advantage":[267],"reducing":[269],"physical":[271],"time":[273],"burden.":[274]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}