{"id":"https://openalex.org/W3212900519","doi":"https://doi.org/10.1186/s12911-021-01629-0","title":"Automatic diagnosis of COVID-19 infection based on ontology reasoning","display_name":"Automatic diagnosis of COVID-19 infection based on ontology reasoning","publication_year":2021,"publication_date":"2021-11-01","ids":{"openalex":"https://openalex.org/W3212900519","doi":"https://doi.org/10.1186/s12911-021-01629-0","mag":"3212900519","pmid":"https://pubmed.ncbi.nlm.nih.gov/34789243"},"language":"en","primary_location":{"id":"doi:10.1186/s12911-021-01629-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-021-01629-0","pdf_url":null,"source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1186/s12911-021-01629-0","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5038471865","display_name":"Huanhuan Wu","orcid":"https://orcid.org/0000-0002-9423-5614"},"institutions":[{"id":"https://openalex.org/I91935597","display_name":"University of South China","ror":"https://ror.org/03mqfn238","country_code":"CN","type":"education","lineage":["https://openalex.org/I91935597"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Huanhuan Wu","raw_affiliation_strings":["School of Computer Sciences, University of South China, 28 West Changsheng Rd, Hengyang, 421001, People's Republic of China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Sciences, University of South China, 28 West Changsheng Rd, Hengyang, 421001, People's Republic of China","institution_ids":["https://openalex.org/I91935597"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027096668","display_name":"Yichen Zhong","orcid":"https://orcid.org/0000-0002-1560-3643"},"institutions":[{"id":"https://openalex.org/I91935597","display_name":"University of South China","ror":"https://ror.org/03mqfn238","country_code":"CN","type":"education","lineage":["https://openalex.org/I91935597"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yichen Zhong","raw_affiliation_strings":["School of Computer Sciences, University of South China, 28 West Changsheng Rd, Hengyang, 421001, People's Republic of China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Sciences, University of South China, 28 West Changsheng Rd, Hengyang, 421001, People's Republic of China","institution_ids":["https://openalex.org/I91935597"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032861309","display_name":"Yingjie Tian","orcid":"https://orcid.org/0000-0002-4675-0398"},"institutions":[{"id":"https://openalex.org/I91935597","display_name":"University of South China","ror":"https://ror.org/03mqfn238","country_code":"CN","type":"education","lineage":["https://openalex.org/I91935597"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yingjie Tian","raw_affiliation_strings":["School of Computer Sciences, University of South China, 28 West Changsheng Rd, Hengyang, 421001, People's Republic of China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Sciences, University of South China, 28 West Changsheng Rd, Hengyang, 421001, People's Republic of China","institution_ids":["https://openalex.org/I91935597"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019795468","display_name":"Shan Jiang","orcid":"https://orcid.org/0000-0003-1015-1278"},"institutions":[{"id":"https://openalex.org/I91935597","display_name":"University of South China","ror":"https://ror.org/03mqfn238","country_code":"CN","type":"education","lineage":["https://openalex.org/I91935597"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shan Jiang","raw_affiliation_strings":["School of Computer Sciences, University of South China, 28 West Changsheng Rd, Hengyang, 421001, People's Republic of China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Sciences, University of South China, 28 West Changsheng Rd, Hengyang, 421001, People's Republic of China","institution_ids":["https://openalex.org/I91935597"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5066976445","display_name":"Lingyun Luo","orcid":"https://orcid.org/0000-0002-8239-9056"},"institutions":[{"id":"https://openalex.org/I4210086011","display_name":"China International Science and Technology Cooperation","ror":"https://ror.org/00bsdxt65","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210086011"]},{"id":"https://openalex.org/I91935597","display_name":"University of South China","ror":"https://ror.org/03mqfn238","country_code":"CN","type":"education","lineage":["https://openalex.org/I91935597"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Lingyun Luo","raw_affiliation_strings":["Hunan Medical Big Data International Science and Technology Innovation Cooperation Base, Hengyang, 421001, People's Republic of China. luoly@usc.edu.cn","School of Computer Sciences, University of South China, 28 West Changsheng Rd, Hengyang, 421001, People's Republic of China. luoly@usc.edu.cn","Hunan Medical Big Data International Science and Technology Innovation Cooperation Base, Hengyang, 421001, People's Republic of China"],"raw_orcid":"https://orcid.org/0000-0002-8239-9056","affiliations":[{"raw_affiliation_string":"Hunan Medical Big Data International Science and Technology Innovation Cooperation Base, Hengyang, 421001, People's Republic of China. luoly@usc.edu.cn","institution_ids":["https://openalex.org/I91935597"]},{"raw_affiliation_string":"School of Computer Sciences, University of South China, 28 West Changsheng Rd, Hengyang, 421001, People's Republic of China. luoly@usc.edu.cn","institution_ids":["https://openalex.org/I91935597"]},{"raw_affiliation_string":"Hunan Medical Big Data International Science and Technology Innovation Cooperation Base, Hengyang, 421001, People's Republic of China","institution_ids":["https://openalex.org/I4210086011"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5066976445"],"corresponding_institution_ids":["https://openalex.org/I4210086011","https://openalex.org/I91935597"],"apc_list":{"value":1570,"currency":"GBP","value_usd":1925},"apc_paid":{"value":1570,"currency":"GBP","value_usd":1925},"fwci":0.4095,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.69319905,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"21","issue":"S9","first_page":"271","last_page":"271"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11273","display_name":"Advanced Graph Neural Networks","score":0.3621000051498413,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11273","display_name":"Advanced Graph Neural Networks","score":0.3621000051498413,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.14419999718666077,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.12290000170469284,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.8306663036346436},{"id":"https://openalex.org/keywords/coronavirus-disease-2019","display_name":"Coronavirus disease 2019 (COVID-19)","score":0.6958697438240051},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.516960084438324},{"id":"https://openalex.org/keywords/government","display_name":"Government (linguistics)","score":0.4615843892097473},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.3942396938800812},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3810560405254364},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.17727738618850708},{"id":"https://openalex.org/keywords/infectious-disease","display_name":"Infectious disease (medical specialty)","score":0.10097000002861023}],"concepts":[{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.8306663036346436},{"id":"https://openalex.org/C3008058167","wikidata":"https://www.wikidata.org/wiki/Q84263196","display_name":"Coronavirus disease 2019 (COVID-19)","level":4,"score":0.6958697438240051},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.516960084438324},{"id":"https://openalex.org/C2778137410","wikidata":"https://www.wikidata.org/wiki/Q2732820","display_name":"Government (linguistics)","level":2,"score":0.4615843892097473},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.3942396938800812},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3810560405254364},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.17727738618850708},{"id":"https://openalex.org/C524204448","wikidata":"https://www.wikidata.org/wiki/Q788926","display_name":"Infectious disease (medical specialty)","level":3,"score":0.10097000002861023},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000086742","descriptor_name":"COVID-19 Testing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000086742","descriptor_name":"COVID-19 Testing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000086742","descriptor_name":"COVID-19 Testing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12911-021-01629-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-021-01629-0","pdf_url":null,"source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},{"id":"pmid:34789243","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34789243","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC medical informatics and decision making","raw_type":null},{"id":"pmh:oai:doaj.org/article:60b976cc1d79459b88994c05900dbd10","is_oa":true,"landing_page_url":"https://doaj.org/article/60b976cc1d79459b88994c05900dbd10","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Medical Informatics and Decision Making, Vol 21, Iss S9, Pp 1-13 (2021)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:8596361","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8596361","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Med Inform Decis Mak","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12911-021-01629-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-021-01629-0","pdf_url":null,"source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2434227340","display_name":null,"funder_award_id":"61502221","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3018447998","display_name":null,"funder_award_id":"2019JJ50520","funder_id":"https://openalex.org/F4320322843","funder_display_name":"Natural Science Foundation of\u00a0Hunan Province"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320322843","display_name":"Natural Science Foundation of\u00a0Hunan Province","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":11,"referenced_works":["https://openalex.org/W1555413277","https://openalex.org/W1654805921","https://openalex.org/W2107315187","https://openalex.org/W2154829072","https://openalex.org/W2261812172","https://openalex.org/W2265991260","https://openalex.org/W2595671585","https://openalex.org/W3035434194","https://openalex.org/W3081980945","https://openalex.org/W3101907797","https://openalex.org/W4252047164"],"related_works":["https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W3031052312","https://openalex.org/W4389568370","https://openalex.org/W3032375762","https://openalex.org/W1995515455","https://openalex.org/W2080531066","https://openalex.org/W3108674512","https://openalex.org/W1506200166","https://openalex.org/W1489783725"],"abstract_inverted_index":{"BACKGROUND:":[0],"2019-nCoV":[1],"has":[2],"been":[3],"spreading":[4],"around":[5],"the":[6,34,46,49,58,79,101,111,115,130,137,153,170,179,183,196],"world":[7],"and":[8,20,42,125,193],"becoming":[9],"a":[10,69],"global":[11],"concern.":[12],"To":[13,44],"prevent":[14,195],"further":[15],"widespread":[16,197],"of":[17,23,36,61,83,114,118,139,163,186,198],"2019-nCoV,":[18],"confirmed":[19],"suspected":[21,116],"cases":[22,117,162,192],"COVID-19":[24,37,70,84,119,154,164,171],"infection":[25,38,165],"are":[26],"suggested":[27],"to":[28,103,135,160],"be":[29],"kept":[30],"in":[31,182],"quarantine.":[32],"However,":[33],"diagnose":[35,161],"is":[39],"quite":[40],"time-consuming":[41],"labor-intensive.":[43],"alleviate":[45],"burden":[47],"on":[48,57],"medical":[50],"staff,":[51],"we":[52,67,150],"have":[53],"done":[54],"some":[55],"research":[56],"intelligent":[59],"diagnosis":[60,113,184],"COVID-19.":[62],"METHODS:":[63],"In":[64,168],"this":[65,140,199],"paper,":[66],"constructed":[68],"Diagnosis":[71,155,172],"Ontology":[72,156,173],"(CDO)":[73],"by":[74],"utilizing":[75],"Prot\u00e9g\u00e9,":[76,149],"which":[77],"includes":[78],"basic":[80],"knowledge":[81],"graph":[82],"as":[85,87,134],"well":[86],"diagnostic":[88],"rules":[89,97],"translated":[90],"from":[91,129],"Chinese":[92],"government":[93],"documents.":[94],"Besides,":[95],"SWRL":[96],"were":[98],"added":[99],"into":[100,148],"ontology":[102],"infer":[104],"intimate":[105],"relationships":[106],"between":[107],"people,":[108],"thus":[109],"facilitating":[110],"efficient":[112],"infection.":[120],"We":[121],"downloaded":[122],"real-case":[123],"data":[124],"extracted":[126],"patients'":[127],"syndromes":[128],"descriptive":[131],"text,":[132],"so":[133],"verify":[136],"accuracy":[138],"experiment.":[141],"RESULTS:":[142],"After":[143],"importing":[144],"those":[145],"real":[146],"instances":[147],"demonstrated":[151],"that":[152],"showed":[157],"good":[158],"performances":[159],"automatically.":[166],"CONCLUSIONS:":[167],"conclusion,":[169],"will":[174],"not":[175],"only":[176],"significantly":[177],"reduce":[178],"manual":[180],"input":[181],"process":[185],"COVID-19,":[187],"but":[188],"also":[189],"uncover":[190],"hidden":[191],"help":[194],"epidemic.":[200]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
