{"id":"https://openalex.org/W3183439464","doi":"https://doi.org/10.1186/s12911-021-01419-8","title":"AMFormulaS: an intelligent retrieval system for traditional Chinese medicine formulas","display_name":"AMFormulaS: an intelligent retrieval system for traditional Chinese medicine formulas","publication_year":2021,"publication_date":"2021-07-01","ids":{"openalex":"https://openalex.org/W3183439464","doi":"https://doi.org/10.1186/s12911-021-01419-8","mag":"3183439464","pmid":"https://pubmed.ncbi.nlm.nih.gov/34330257"},"language":"en","primary_location":{"id":"doi:10.1186/s12911-021-01419-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-021-01419-8","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/track/pdf/10.1186/s12911-021-01419-8","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcmedinformdecismak.biomedcentral.com/track/pdf/10.1186/s12911-021-01419-8","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5056666659","display_name":"Yidi Cui","orcid":null},"institutions":[{"id":"https://openalex.org/I4210097783","display_name":"Tongde Hospital of Zhejiang Province","ror":"https://ror.org/00trnhw76","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210097783"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yidi Cui","raw_affiliation_strings":["Tongde Hospital of Zhejiang Province, Hangzhou, 310007, Zhejiang, China","Zhejiang Academy of Traditional Chinese Medicine, Hangzhou, 310007, Zhejiang, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Tongde Hospital of Zhejiang Province, Hangzhou, 310007, Zhejiang, China","institution_ids":["https://openalex.org/I4210097783"]},{"raw_affiliation_string":"Zhejiang Academy of Traditional Chinese Medicine, Hangzhou, 310007, Zhejiang, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103074750","display_name":"Bo Gao","orcid":"https://orcid.org/0000-0001-7495-5158"},"institutions":[{"id":"https://openalex.org/I200296433","display_name":"Chinese Academy of Medical Sciences & Peking Union Medical College","ror":"https://ror.org/02drdmm93","country_code":"CN","type":"education","lineage":["https://openalex.org/I200296433"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bo Gao","raw_affiliation_strings":["Institute of Information on Traditional Chinese Medicine, China Academy of Chinese Medical Sciences, Beijing, 100700, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Information on Traditional Chinese Medicine, China Academy of Chinese Medical Sciences, Beijing, 100700, China","institution_ids":["https://openalex.org/I200296433"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100450896","display_name":"Lihong Liu","orcid":"https://orcid.org/0000-0002-9956-2665"},"institutions":[{"id":"https://openalex.org/I200296433","display_name":"Chinese Academy of Medical Sciences & Peking Union Medical College","ror":"https://ror.org/02drdmm93","country_code":"CN","type":"education","lineage":["https://openalex.org/I200296433"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lihong Liu","raw_affiliation_strings":["Institute of Information on Traditional Chinese Medicine, China Academy of Chinese Medical Sciences, Beijing, 100700, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Information on Traditional Chinese Medicine, China Academy of Chinese Medical Sciences, Beijing, 100700, China","institution_ids":["https://openalex.org/I200296433"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101920009","display_name":"Jing Liu","orcid":"https://orcid.org/0000-0001-8972-6569"},"institutions":[{"id":"https://openalex.org/I200296433","display_name":"Chinese Academy of Medical Sciences & Peking Union Medical College","ror":"https://ror.org/02drdmm93","country_code":"CN","type":"education","lineage":["https://openalex.org/I200296433"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jing Liu","raw_affiliation_strings":["Institute of Information on Traditional Chinese Medicine, China Academy of Chinese Medical Sciences, Beijing, 100700, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Information on Traditional Chinese Medicine, China Academy of Chinese Medical Sciences, Beijing, 100700, China","institution_ids":["https://openalex.org/I200296433"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5082029796","display_name":"Yan Zhu","orcid":"https://orcid.org/0000-0002-5592-8258"},"institutions":[{"id":"https://openalex.org/I200296433","display_name":"Chinese Academy of Medical Sciences & Peking Union Medical College","ror":"https://ror.org/02drdmm93","country_code":"CN","type":"education","lineage":["https://openalex.org/I200296433"]},{"id":"https://openalex.org/I4210141683","display_name":"China Academy of Chinese Medical Sciences","ror":"https://ror.org/042pgcv68","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210141683"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yan Zhu","raw_affiliation_strings":["Institute of Information on Traditional Chinese Medicine, China Academy of Chinese Medical Sciences, Beijing, 100700, China. zhuyan166@126.com","Institute of Information on Traditional Chinese Medicine, China Academy of Chinese Medical Sciences, Beijing, 100700, China"],"raw_orcid":"https://orcid.org/0000-0002-5592-8258","affiliations":[{"raw_affiliation_string":"Institute of Information on Traditional Chinese Medicine, China Academy of Chinese Medical Sciences, Beijing, 100700, China. zhuyan166@126.com","institution_ids":["https://openalex.org/I200296433","https://openalex.org/I4210141683"]},{"raw_affiliation_string":"Institute of Information on Traditional Chinese Medicine, China Academy of Chinese Medical Sciences, Beijing, 100700, China","institution_ids":["https://openalex.org/I200296433"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5082029796"],"corresponding_institution_ids":["https://openalex.org/I200296433","https://openalex.org/I4210141683"],"apc_list":{"value":1570,"currency":"GBP","value_usd":1925},"apc_paid":{"value":1570,"currency":"GBP","value_usd":1925},"fwci":1.5365,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":{"value":0.83456916,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"21","issue":"S2","first_page":"56","last_page":"56"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12647","display_name":"Traditional Chinese Medicine Studies","score":0.7404999732971191,"subfield":{"id":"https://openalex.org/subfields/2707","display_name":"Complementary and alternative medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T12647","display_name":"Traditional Chinese Medicine Studies","score":0.7404999732971191,"subfield":{"id":"https://openalex.org/subfields/2707","display_name":"Complementary and alternative medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.12729999423027039,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12673","display_name":"Microbial Metabolism and Applications","score":0.008100000210106373,"subfield":{"id":"https://openalex.org/subfields/1305","display_name":"Biotechnology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.7740315794944763},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.7630186080932617},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7388638257980347},{"id":"https://openalex.org/keywords/data-retrieval","display_name":"Data retrieval","score":0.5665359497070312},{"id":"https://openalex.org/keywords/search-engine","display_name":"Search engine","score":0.4922980070114136},{"id":"https://openalex.org/keywords/tf\u2013idf","display_name":"tf\u2013idf","score":0.47715824842453003},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4423435926437378},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.330316960811615},{"id":"https://openalex.org/keywords/term","display_name":"Term (time)","score":0.12162482738494873}],"concepts":[{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.7740315794944763},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.7630186080932617},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7388638257980347},{"id":"https://openalex.org/C551230270","wikidata":"https://www.wikidata.org/wiki/Q4368942","display_name":"Data retrieval","level":2,"score":0.5665359497070312},{"id":"https://openalex.org/C97854310","wikidata":"https://www.wikidata.org/wiki/Q19541","display_name":"Search engine","level":2,"score":0.4922980070114136},{"id":"https://openalex.org/C81758059","wikidata":"https://www.wikidata.org/wiki/Q796584","display_name":"tf\u2013idf","level":3,"score":0.47715824842453003},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4423435926437378},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.330316960811615},{"id":"https://openalex.org/C61797465","wikidata":"https://www.wikidata.org/wiki/Q1188986","display_name":"Term (time)","level":2,"score":0.12162482738494873},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D004365","descriptor_name":"Drugs, Chinese Herbal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004365","descriptor_name":"Drugs, Chinese Herbal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004365","descriptor_name":"Drugs, Chinese Herbal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008516","descriptor_name":"Medicine, Chinese Traditional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008516","descriptor_name":"Medicine, Chinese Traditional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008516","descriptor_name":"Medicine, Chinese Traditional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12911-021-01419-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-021-01419-8","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/track/pdf/10.1186/s12911-021-01419-8","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},{"id":"pmid:34330257","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34330257","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC medical informatics and decision making","raw_type":null},{"id":"pmh:oai:doaj.org/article:8cbd4354e91c439d9846233255cc5bf7","is_oa":true,"landing_page_url":"https://doaj.org/article/8cbd4354e91c439d9846233255cc5bf7","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Medical Informatics and Decision Making, Vol 21, Iss S2, Pp 1-13 (2021)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:8323275","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8323275","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Med Inform Decis Mak","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12911-021-01419-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-021-01419-8","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/track/pdf/10.1186/s12911-021-01419-8","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.6299999952316284,"display_name":"Good health and well-being"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3183439464.pdf","grobid_xml":"https://content.openalex.org/works/W3183439464.grobid-xml"},"referenced_works_count":9,"referenced_works":["https://openalex.org/W271150316","https://openalex.org/W1514721217","https://openalex.org/W1678960312","https://openalex.org/W1993352447","https://openalex.org/W1994898147","https://openalex.org/W1995382851","https://openalex.org/W2379853494","https://openalex.org/W2390426383","https://openalex.org/W2900828081"],"related_works":["https://openalex.org/W2382433580","https://openalex.org/W2100326285","https://openalex.org/W2369751049","https://openalex.org/W2198237484","https://openalex.org/W2381981226","https://openalex.org/W2383777945","https://openalex.org/W2365583997","https://openalex.org/W4296339319","https://openalex.org/W3118256841","https://openalex.org/W4361790895"],"abstract_inverted_index":{"BACKGROUND:":[0],"Formula":[1,96],"is":[2,29,125],"an":[3,72],"important":[4],"means":[5],"of":[6,38,80,83,116,135,163],"traditional":[7],"Chinese":[8],"medicine":[9],"(TCM)":[10],"to":[11,32],"treat":[12],"diseases":[13],"and":[14,36,51,57,71,94,106,113,118,142,152,171,181],"has":[15],"great":[16],"research":[17,169,180],"significance.":[18],"There":[19],"are":[20],"many":[21],"formula":[22,66,136],"databases,":[23],"but":[24],"accessing":[25],"rich":[26],"information":[27,139],"efficiently":[28],"difficult":[30],"due":[31],"the":[33,78,102,111,157,160,164],"small-scale":[34],"data":[35,154],"lack":[37],"intelligent":[39,73,87,107,128],"search":[40,143],"engine.":[41,144],"METHODS:":[42],"We":[43],"selected":[44],"38,000":[45],"formulas":[46,117],"from":[47],"a":[48,64,126,133],"semi-structured":[49],"database,":[50,104],"then":[52],"segmented":[53],"text,":[54],"extracted":[55],"information,":[56],"standardized":[58],"terms.":[59],"After":[60],"that,":[61],"we":[62],"constructed":[63,99],"structured":[65,103],"database":[67],"based":[68,100],"on":[69,101],"ontology":[70],"retrieval":[74,88,108,112,129,151],"engine":[75],"by":[76],"calculating":[77],"weight":[79],"decoction":[81,119],"pieces":[82,120],"formulas.":[84],"RESULTS:":[85],"The":[86],"system":[89,130,141,165],"named":[90],"AMFormulaS":[91,124,145],"(means":[92],"Ancient":[93],"Modern":[95],"system)":[97],"was":[98],"ontology,":[105],"engine,":[109],"so":[110],"statistical":[114,161],"analysis":[115,162],"were":[121],"realized.":[122],"CONCLUSIONS:":[123],"large-scale":[127],"which":[131],"includes":[132],"mass":[134],"data,":[137],"efficient":[138,150],"extraction":[140],"could":[146],"provide":[147],"users":[148],"with":[149],"comprehensive":[153],"support.":[155],"At":[156],"same":[158],"time,":[159],"can":[166],"enlighten":[167],"scientific":[168],"ideas":[170],"support":[172],"patent":[173],"review":[174],"as":[175,177],"well":[176],"new":[178],"drug":[179],"development.":[182]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":1}],"updated_date":"2026-07-15T18:14:33.161393","created_date":"2025-10-10T00:00:00"}
