{"id":"https://openalex.org/W3091382176","doi":"https://doi.org/10.1186/s12911-020-01241-8","title":"Korean clinical entity recognition from diagnosis text using BERT","display_name":"Korean clinical entity recognition from diagnosis text using BERT","publication_year":2020,"publication_date":"2020-09-01","ids":{"openalex":"https://openalex.org/W3091382176","doi":"https://doi.org/10.1186/s12911-020-01241-8","mag":"3091382176","pmid":"https://pubmed.ncbi.nlm.nih.gov/32998724"},"language":"en","primary_location":{"id":"doi:10.1186/s12911-020-01241-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-020-01241-8","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/track/pdf/10.1186/s12911-020-01241-8","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcmedinformdecismak.biomedcentral.com/track/pdf/10.1186/s12911-020-01241-8","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100337302","display_name":"Young-Min Kim","orcid":"https://orcid.org/0000-0002-6914-901X"},"institutions":[{"id":"https://openalex.org/I93906172","display_name":"Anyang University","ror":"https://ror.org/018pdh902","country_code":"KR","type":"education","lineage":["https://openalex.org/I93906172"]},{"id":"https://openalex.org/I4575257","display_name":"Hanyang University","ror":"https://ror.org/046865y68","country_code":"KR","type":"education","lineage":["https://openalex.org/I4575257"]}],"countries":["KR"],"is_corresponding":true,"raw_author_name":"Young-Min Kim","raw_affiliation_strings":["Division of Interdisciplinary Industrial Studies, Hanyang University, 222 Wangsimni-ro, Seongdong-gu, Seoul, South Korea. yngmnkim@hanyang.ac.kr","Graduate School of Technology & Innovation Management, Hanyang University, 222 Wangsimni-ro, Seongdong-gu, Seoul, South Korea. yngmnkim@hanyang.ac.kr","Graduate School of Technology & Innovation Management, Hanyang University, 222 Wangsimni-ro, Seongdong-gu, Seoul, South Korea"],"affiliations":[{"raw_affiliation_string":"Division of Interdisciplinary Industrial Studies, Hanyang University, 222 Wangsimni-ro, Seongdong-gu, Seoul, South Korea. yngmnkim@hanyang.ac.kr","institution_ids":[]},{"raw_affiliation_string":"Graduate School of Technology & Innovation Management, Hanyang University, 222 Wangsimni-ro, Seongdong-gu, Seoul, South Korea. yngmnkim@hanyang.ac.kr","institution_ids":[]},{"raw_affiliation_string":"Graduate School of Technology & Innovation Management, Hanyang University, 222 Wangsimni-ro, Seongdong-gu, Seoul, South Korea","institution_ids":["https://openalex.org/I93906172","https://openalex.org/I4575257"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5035038702","display_name":"Tae\u2010Hoon Lee","orcid":"https://orcid.org/0000-0003-0105-1750"},"institutions":[{"id":"https://openalex.org/I4575257","display_name":"Hanyang University","ror":"https://ror.org/046865y68","country_code":"KR","type":"education","lineage":["https://openalex.org/I4575257"]},{"id":"https://openalex.org/I93906172","display_name":"Anyang University","ror":"https://ror.org/018pdh902","country_code":"KR","type":"education","lineage":["https://openalex.org/I93906172"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Tae-Hoon Lee","raw_affiliation_strings":["Division of Interdisciplinary Industrial Studies, Hanyang University, 222 Wangsimni-ro, Seongdong-gu, Seoul, South Korea"],"affiliations":[{"raw_affiliation_string":"Division of Interdisciplinary Industrial Studies, Hanyang University, 222 Wangsimni-ro, Seongdong-gu, Seoul, South Korea","institution_ids":["https://openalex.org/I93906172","https://openalex.org/I4575257"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5100337302"],"corresponding_institution_ids":["https://openalex.org/I4575257","https://openalex.org/I93906172"],"apc_list":{"value":1570,"currency":"GBP","value_usd":1925},"apc_paid":{"value":1570,"currency":"GBP","value_usd":1925},"fwci":3.9422,"has_fulltext":true,"cited_by_count":43,"citation_normalized_percentile":{"value":0.94788474,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":99},"biblio":{"volume":"20","issue":"S7","first_page":"242","last_page":"242"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8372513651847839},{"id":"https://openalex.org/keywords/named-entity-recognition","display_name":"Named-entity recognition","score":0.7721362113952637},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.7187286019325256},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.6382200121879578},{"id":"https://openalex.org/keywords/lexical-analysis","display_name":"Lexical analysis","score":0.5535312294960022},{"id":"https://openalex.org/keywords/f1-score","display_name":"F1 score","score":0.5522704124450684},{"id":"https://openalex.org/keywords/language-model","display_name":"Language model","score":0.5343830585479736},{"id":"https://openalex.org/keywords/encoder","display_name":"Encoder","score":0.5218890309333801},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.4565353989601135},{"id":"https://openalex.org/keywords/precision-and-recall","display_name":"Precision and recall","score":0.4369812309741974},{"id":"https://openalex.org/keywords/vocabulary","display_name":"Vocabulary","score":0.4224008619785309},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3728887140750885},{"id":"https://openalex.org/keywords/speech-recognition","display_name":"Speech recognition","score":0.36272114515304565},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.329621821641922}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8372513651847839},{"id":"https://openalex.org/C2779135771","wikidata":"https://www.wikidata.org/wiki/Q403574","display_name":"Named-entity recognition","level":3,"score":0.7721362113952637},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.7187286019325256},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.6382200121879578},{"id":"https://openalex.org/C176982825","wikidata":"https://www.wikidata.org/wiki/Q835922","display_name":"Lexical analysis","level":2,"score":0.5535312294960022},{"id":"https://openalex.org/C148524875","wikidata":"https://www.wikidata.org/wiki/Q6975395","display_name":"F1 score","level":2,"score":0.5522704124450684},{"id":"https://openalex.org/C137293760","wikidata":"https://www.wikidata.org/wiki/Q3621696","display_name":"Language model","level":2,"score":0.5343830585479736},{"id":"https://openalex.org/C118505674","wikidata":"https://www.wikidata.org/wiki/Q42586063","display_name":"Encoder","level":2,"score":0.5218890309333801},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.4565353989601135},{"id":"https://openalex.org/C81669768","wikidata":"https://www.wikidata.org/wiki/Q2359161","display_name":"Precision and recall","level":2,"score":0.4369812309741974},{"id":"https://openalex.org/C2777601683","wikidata":"https://www.wikidata.org/wiki/Q6499736","display_name":"Vocabulary","level":2,"score":0.4224008619785309},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3728887140750885},{"id":"https://openalex.org/C28490314","wikidata":"https://www.wikidata.org/wiki/Q189436","display_name":"Speech recognition","level":1,"score":0.36272114515304565},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.329621821641922},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056910","descriptor_name":"Republic of Korea","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056910","descriptor_name":"Republic of Korea","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056910","descriptor_name":"Republic of Korea","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12911-020-01241-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-020-01241-8","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/track/pdf/10.1186/s12911-020-01241-8","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},{"id":"pmid:32998724","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32998724","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC medical informatics and decision making","raw_type":null},{"id":"pmh:oai:doaj.org/article:10e56fe0f1de4c6295c4ee810788924b","is_oa":true,"landing_page_url":"https://doaj.org/article/10e56fe0f1de4c6295c4ee810788924b","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Medical Informatics and Decision Making, Vol 20, Iss S7, Pp 1-9 (2020)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:7526093","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7526093","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Med Inform Decis Mak","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12911-020-01241-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-020-01241-8","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/track/pdf/10.1186/s12911-020-01241-8","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6899999976158142,"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4"}],"awards":[{"id":"https://openalex.org/G5092055710","display_name":null,"funder_award_id":"000000","funder_id":"https://openalex.org/F4320321681","funder_display_name":"Ministry of Trade, Industry and Energy"},{"id":"https://openalex.org/G6580423611","display_name":null,"funder_award_id":"201600000002255","funder_id":"https://openalex.org/F4320321142","funder_display_name":"Hanyang University"}],"funders":[{"id":"https://openalex.org/F4320321142","display_name":"Hanyang University","ror":"https://ror.org/046865y68"},{"id":"https://openalex.org/F4320321681","display_name":"Ministry of Trade, Industry and Energy","ror":"https://ror.org/008nkqk13"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3091382176.pdf","grobid_xml":"https://content.openalex.org/works/W3091382176.grobid-xml"},"referenced_works_count":43,"referenced_works":["https://openalex.org/W1700952868","https://openalex.org/W1847618513","https://openalex.org/W1940872118","https://openalex.org/W1981276685","https://openalex.org/W2107435951","https://openalex.org/W2131046557","https://openalex.org/W2168041406","https://openalex.org/W2525778437","https://openalex.org/W2595551253","https://openalex.org/W2598789561","https://openalex.org/W2612690371","https://openalex.org/W2625625371","https://openalex.org/W2626778328","https://openalex.org/W2729101176","https://openalex.org/W2742947407","https://openalex.org/W2751936342","https://openalex.org/W2759609474","https://openalex.org/W2767677971","https://openalex.org/W2768488789","https://openalex.org/W2787560479","https://openalex.org/W2793262733","https://openalex.org/W2798955519","https://openalex.org/W2884001105","https://openalex.org/W2886305736","https://openalex.org/W2887428522","https://openalex.org/W2891434004","https://openalex.org/W2892525833","https://openalex.org/W2911840101","https://openalex.org/W2949252816","https://openalex.org/W2949868354","https://openalex.org/W2952341153","https://openalex.org/W2962902328","https://openalex.org/W2963341956","https://openalex.org/W2963466151","https://openalex.org/W2963560594","https://openalex.org/W2963974889","https://openalex.org/W3104523752","https://openalex.org/W3121541553","https://openalex.org/W4213160500","https://openalex.org/W4241900798","https://openalex.org/W4247857759","https://openalex.org/W4250866398","https://openalex.org/W4290742115"],"related_works":["https://openalex.org/W4387517132","https://openalex.org/W4378498597","https://openalex.org/W3217218495","https://openalex.org/W3101140821","https://openalex.org/W4287816966","https://openalex.org/W3015650676","https://openalex.org/W4281560212","https://openalex.org/W3180764077","https://openalex.org/W3116252395","https://openalex.org/W4387490204"],"abstract_inverted_index":{"The":[0,16],"recently":[1],"developed":[2],"BERT":[3,35],"and":[4,26],"its":[5],"WordPiece":[6],"tokenization":[7],"are":[8],"effective":[9],"for":[10,23],"the":[11,24,32,42,52],"Korean":[12],"clinical":[13,57],"entity":[14,58],"recognition.":[15],"experiments":[17],"using":[18],"a":[19,27,38],"new":[20],"dataset":[21,30],"constructed":[22],"purpose":[25],"standard":[28],"NER":[29],"show":[31],"superiority":[33],"of":[34,44,51],"compared":[36],"to":[37],"state-of-the-art":[39],"method.":[40],"To":[41],"best":[43],"our":[45],"knowledge,":[46],"this":[47],"work":[48],"is":[49],"one":[50],"first":[53],"studies":[54],"dealing":[55],"with":[56],"extraction":[59],"from":[60],"non-EHR":[61],"data.":[62]},"counts_by_year":[{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":8},{"year":2023,"cited_by_count":13},{"year":2022,"cited_by_count":10},{"year":2021,"cited_by_count":6}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
