{"id":"https://openalex.org/W2993961432","doi":"https://doi.org/10.1186/s12911-019-0935-4","title":"A study of deep learning methods for de-identification of clinical notes in cross-institute settings","display_name":"A study of deep learning methods for de-identification of clinical notes in cross-institute settings","publication_year":2019,"publication_date":"2019-12-01","ids":{"openalex":"https://openalex.org/W2993961432","doi":"https://doi.org/10.1186/s12911-019-0935-4","mag":"2993961432","pmid":"https://pubmed.ncbi.nlm.nih.gov/31801524"},"language":"en","primary_location":{"id":"doi:10.1186/s12911-019-0935-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-019-0935-4","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/counter/pdf/10.1186/s12911-019-0935-4","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcmedinformdecismak.biomedcentral.com/counter/pdf/10.1186/s12911-019-0935-4","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103133745","display_name":"Xi Yang","orcid":"https://orcid.org/0000-0003-2981-3972"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xi Yang","raw_affiliation_strings":["Department of Health Outcomes and Biomedical Informatics, College of Medicine, University of Florida, Clinical and Translational Research Building 2004 Mowry Road, PO Box 100177, Gainesville, Florida, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Health Outcomes and Biomedical Informatics, College of Medicine, University of Florida, Clinical and Translational Research Building 2004 Mowry Road, PO Box 100177, Gainesville, Florida, USA","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031161176","display_name":"Tianchen Lyu","orcid":"https://orcid.org/0000-0002-0981-3847"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tianchen Lyu","raw_affiliation_strings":["Department of Health Outcomes and Biomedical Informatics, College of Medicine, University of Florida, Clinical and Translational Research Building 2004 Mowry Road, PO Box 100177, Gainesville, Florida, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Health Outcomes and Biomedical Informatics, College of Medicine, University of Florida, Clinical and Translational Research Building 2004 Mowry Road, PO Box 100177, Gainesville, Florida, USA","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100340657","display_name":"Qian Li","orcid":"https://orcid.org/0000-0003-1529-7014"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Qian Li","raw_affiliation_strings":["Department of Health Outcomes and Biomedical Informatics, College of Medicine, University of Florida, Clinical and Translational Research Building 2004 Mowry Road, PO Box 100177, Gainesville, Florida, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Health Outcomes and Biomedical Informatics, College of Medicine, University of Florida, Clinical and Translational Research Building 2004 Mowry Road, PO Box 100177, Gainesville, Florida, USA","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075345958","display_name":"Chih-Yin Lee","orcid":null},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chih-Yin Lee","raw_affiliation_strings":["Department of Health Outcomes and Biomedical Informatics, College of Medicine, University of Florida, Clinical and Translational Research Building 2004 Mowry Road, PO Box 100177, Gainesville, Florida, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Health Outcomes and Biomedical Informatics, College of Medicine, University of Florida, Clinical and Translational Research Building 2004 Mowry Road, PO Box 100177, Gainesville, Florida, USA","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030951014","display_name":"Jiang Bian","orcid":"https://orcid.org/0000-0002-2238-5429"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jiang Bian","raw_affiliation_strings":["Department of Health Outcomes and Biomedical Informatics, College of Medicine, University of Florida, Clinical and Translational Research Building 2004 Mowry Road, PO Box 100177, Gainesville, Florida, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Health Outcomes and Biomedical Informatics, College of Medicine, University of Florida, Clinical and Translational Research Building 2004 Mowry Road, PO Box 100177, Gainesville, Florida, USA","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076610873","display_name":"William R. Hogan","orcid":"https://orcid.org/0000-0002-9881-1017"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"William R. Hogan","raw_affiliation_strings":["Department of Health Outcomes and Biomedical Informatics, College of Medicine, University of Florida, Clinical and Translational Research Building 2004 Mowry Road, PO Box 100177, Gainesville, Florida, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Health Outcomes and Biomedical Informatics, College of Medicine, University of Florida, Clinical and Translational Research Building 2004 Mowry Road, PO Box 100177, Gainesville, Florida, USA","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5010253402","display_name":"Yonghui Wu","orcid":"https://orcid.org/0000-0002-6780-6135"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]},{"id":"https://openalex.org/I94062374","display_name":"Florida College","ror":"https://ror.org/010bgev76","country_code":"US","type":"education","lineage":["https://openalex.org/I94062374"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Yonghui Wu","raw_affiliation_strings":["Department of Health Outcomes and Biomedical Informatics, College of Medicine, University of Florida, Clinical and Translational Research Building 2004 Mowry Road, PO Box 100177, Gainesville, Florida, USA. yonghui.wu@ufl.edu","Department of Health Outcomes and Biomedical Informatics, College of Medicine, University of Florida, Clinical and Translational Research Building 2004 Mowry Road, PO Box 100177, Gainesville, Florida, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Health Outcomes and Biomedical Informatics, College of Medicine, University of Florida, Clinical and Translational Research Building 2004 Mowry Road, PO Box 100177, Gainesville, Florida, USA. yonghui.wu@ufl.edu","institution_ids":["https://openalex.org/I94062374"]},{"raw_affiliation_string":"Department of Health Outcomes and Biomedical Informatics, College of Medicine, University of Florida, Clinical and Translational Research Building 2004 Mowry Road, PO Box 100177, Gainesville, Florida, USA","institution_ids":["https://openalex.org/I33213144"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5010253402"],"corresponding_institution_ids":["https://openalex.org/I33213144","https://openalex.org/I94062374"],"apc_list":{"value":1570,"currency":"GBP","value_usd":1925},"apc_paid":{"value":1570,"currency":"GBP","value_usd":1925},"fwci":3.0774,"has_fulltext":true,"cited_by_count":74,"citation_normalized_percentile":{"value":0.92639115,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"19","issue":"S5","first_page":"232","last_page":"232"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.24320000410079956,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.24320000410079956,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.16369999945163727,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10350","display_name":"Electronic Health Records Systems","score":0.15489999949932098,"subfield":{"id":"https://openalex.org/subfields/3605","display_name":"Health Information Management"},"field":{"id":"https://openalex.org/fields/36","display_name":"Health Professions"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/health-informatics","display_name":"Health informatics","score":0.7487895488739014},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5632629990577698},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4522554874420166},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.3814601004123688},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.38082730770111084},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.33240777254104614},{"id":"https://openalex.org/keywords/public-health","display_name":"Public health","score":0.21358245611190796},{"id":"https://openalex.org/keywords/nursing","display_name":"Nursing","score":0.12015026807785034}],"concepts":[{"id":"https://openalex.org/C145642194","wikidata":"https://www.wikidata.org/wiki/Q870895","display_name":"Health informatics","level":3,"score":0.7487895488739014},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5632629990577698},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4522554874420166},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.3814601004123688},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.38082730770111084},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.33240777254104614},{"id":"https://openalex.org/C138816342","wikidata":"https://www.wikidata.org/wiki/Q189603","display_name":"Public health","level":2,"score":0.21358245611190796},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.12015026807785034},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000068240","descriptor_name":"Data Anonymization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000068240","descriptor_name":"Data Anonymization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000068240","descriptor_name":"Data Anonymization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003219","descriptor_name":"Confidentiality","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003219","descriptor_name":"Confidentiality","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003219","descriptor_name":"Confidentiality","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008037","descriptor_name":"Linguistics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008037","descriptor_name":"Linguistics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008037","descriptor_name":"Linguistics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12911-019-0935-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-019-0935-4","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/counter/pdf/10.1186/s12911-019-0935-4","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},{"id":"pmid:31801524","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31801524","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC medical informatics and decision making","raw_type":null},{"id":"pmh:oai:doaj.org/article:775e5d47b225435ca26e6ab185b920d4","is_oa":false,"landing_page_url":"https://doaj.org/article/775e5d47b225435ca26e6ab185b920d4","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Medical Informatics and Decision Making, Vol 19, Iss S5, Pp 1-9 (2019)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:6894104","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6894104","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Med Inform Decis Mak","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12911-019-0935-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-019-0935-4","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/counter/pdf/10.1186/s12911-019-0935-4","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G19436128","display_name":null,"funder_award_id":"P30 AG028740","funder_id":"https://openalex.org/F4320337337","funder_display_name":"National Institute on Aging"},{"id":"https://openalex.org/G2707742091","display_name":null,"funder_award_id":"UL1 TR000064","funder_id":"https://openalex.org/F4320337472","funder_display_name":"National Center for Advancing Translational Sciences"},{"id":"https://openalex.org/G4251098122","display_name":null,"funder_award_id":"UL1TR001427","funder_id":"https://openalex.org/F4320337472","funder_display_name":"National Center for Advancing Translational Sciences"},{"id":"https://openalex.org/G432001851","display_name":null,"funder_award_id":"UL1TR001427","funder_id":"https://openalex.org/F4320334287","funder_display_name":"Clinical and Translational Science Institute, University of Florida"},{"id":"https://openalex.org/G6806891469","display_name":null,"funder_award_id":"UL1TR001427","funder_id":"https://openalex.org/F4320310009","funder_display_name":"University of Florida"},{"id":"https://openalex.org/G7211153767","display_name":null,"funder_award_id":"UL1TR001427","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320309480","display_name":"Nvidia","ror":"https://ror.org/03jdj4y14"},{"id":"https://openalex.org/F4320310009","display_name":"University of Florida","ror":"https://ror.org/02y3ad647"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320334287","display_name":"Clinical and Translational Science Institute, University of Florida","ror":null},{"id":"https://openalex.org/F4320337337","display_name":"National Institute on Aging","ror":"https://ror.org/049v75w11"},{"id":"https://openalex.org/F4320337472","display_name":"National Center for Advancing Translational Sciences","ror":"https://ror.org/04pw6fb54"},{"id":"https://openalex.org/F4320338247","display_name":"Moonshot Research and Development Program","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2993961432.pdf","grobid_xml":"https://content.openalex.org/works/W2993961432.grobid-xml"},"referenced_works_count":44,"referenced_works":["https://openalex.org/W992506503","https://openalex.org/W1034374084","https://openalex.org/W1481556729","https://openalex.org/W1528012351","https://openalex.org/W1972477581","https://openalex.org/W1983459608","https://openalex.org/W1995228216","https://openalex.org/W2015620729","https://openalex.org/W2065784179","https://openalex.org/W2105842272","https://openalex.org/W2107435951","https://openalex.org/W2147880316","https://openalex.org/W2160987310","https://openalex.org/W2169818249","https://openalex.org/W2183114698","https://openalex.org/W2190333735","https://openalex.org/W2396881363","https://openalex.org/W2398489001","https://openalex.org/W2412384041","https://openalex.org/W2425617182","https://openalex.org/W2488984245","https://openalex.org/W2563351168","https://openalex.org/W2621075239","https://openalex.org/W2622474949","https://openalex.org/W2624380710","https://openalex.org/W2625625371","https://openalex.org/W2738180183","https://openalex.org/W2755053976","https://openalex.org/W2787045460","https://openalex.org/W2805089815","https://openalex.org/W2891765253","https://openalex.org/W2896284100","https://openalex.org/W2908038241","https://openalex.org/W2913087274","https://openalex.org/W2915480215","https://openalex.org/W2940685834","https://openalex.org/W2950133940","https://openalex.org/W2951562155","https://openalex.org/W2952729433","https://openalex.org/W2963026768","https://openalex.org/W2963816430","https://openalex.org/W2963956191","https://openalex.org/W3104523752","https://openalex.org/W6685158001"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W3031052312","https://openalex.org/W4389568370","https://openalex.org/W3032375762","https://openalex.org/W1995515455","https://openalex.org/W2080531066","https://openalex.org/W2586801360","https://openalex.org/W3108674512","https://openalex.org/W1506200166","https://openalex.org/W1489783725"],"abstract_inverted_index":{"BACKGROUND:":[0],"De-identification":[1],"is":[2,88,273,292],"a":[3,96,109,113,183,293,316],"critical":[4],"technology":[5],"to":[6,51,76,89,167,222,228,275,296,305],"facilitate":[7],"the":[8,69,100,119,136,149,169,240,249,256,260,302],"use":[9],"of":[10,38,85,121,201,242,266],"unstructured":[11],"clinical":[12,21,39,53,116,153,194,281,313],"text":[13,54,195,282],"while":[14],"protecting":[15],"patient":[16],"privacy":[17],"and":[18,34,64,102,134,155,160,163,176,196,213,220,224,254,262,268,283,300],"confidentiality.":[19],"The":[20,83,199],"natural":[22],"language":[23],"processing":[24],"(NLP)":[25],"community":[26],"has":[27],"invested":[28],"great":[29],"efforts":[30],"in":[31,244,288],"developing":[32,48],"methods":[33,94],"corpora":[35,43],"for":[36,47],"de-identification":[37,79,93,110,128,243,277,309],"notes.":[40],"These":[41],"annotated":[42,231],"are":[44,73],"valuable":[45],"resources":[46,285],"automated":[49,78],"systems":[50],"de-identify":[52],"at":[55,95,232],"local":[56,280],"hospitals.":[57],"However,":[58],"existing":[59],"studies":[60,75],"often":[61],"utilized":[62],"training":[63,303],"test":[65],"data":[66],"collected":[67],"from":[68,118,148,192,218,315],"same":[70],"institution.":[71,318],"There":[72],"few":[74],"explore":[77],"under":[80],"cross-institute":[81,97,245,289],"settings.":[82,246,290],"goal":[84],"this":[86],"study":[87],"examine":[90],"deep":[91,126,170,202,307],"learning-based":[92,127,308],"setting,":[98],"identify":[99],"bottlenecks,":[101],"provide":[103],"potential":[104,294],"solutions.":[105],"METHODS:":[106],"We":[107,141],"created":[108],"corpus":[111,186,209,230,314],"using":[112,130,138,173,182,206,251,279,312],"total":[114],"500":[115],"notes":[117,175,253],"University":[120],"Florida":[122],"(UF)":[123],"Health,":[124],"developed":[125],"models":[129,172,204,250,278,310],"2014":[131],"i2b2/UTHealth":[132],"corpus,":[133],"evaluated":[135],"performance":[137,189,200,241],"UF":[139,174,233,252],"corpus.":[140],"compared":[142,164],"five":[143],"different":[144,317],"word":[145,180],"embeddings":[146,181,191],"trained":[147,205,311],"general":[150,184],"English":[151,185],"text,":[152,154],"biomedical":[156,197],"literature,":[157],"explored":[158],"lexical":[159],"linguistic":[161],"features,":[162],"two":[165],"strategies":[166],"customize":[168,276,306],"learning":[171,203],"resources.":[177],"RESULTS:":[178],"Pre-trained":[179],"achieved":[187,259],"better":[188],"than":[190],"de-identified":[193],"literature.":[198],"only":[207],"i2b2":[208],"significantly":[210],"dropped":[211,217],"(strict":[212],"relax":[214],"F1":[215,264],"scores":[216,265],"0.9547":[219],"0.9646":[221],"0.8568":[223],"0.8958)":[225],"when":[226,286],"applied":[227,287],"another":[229],"Health.":[234],"Linguistic":[235],"features":[236],"could":[237],"further":[238],"improve":[239],"After":[247],"customizing":[248],"resource,":[255],"best":[257],"model":[258],"strict":[261],"relaxed":[263],"0.9288":[267],"0.9584,":[269],"respectively.":[270],"CONCLUSIONS:":[271],"It":[272],"necessary":[274],"other":[284],"Fine-tuning":[291],"solution":[295],"re-use":[297],"pre-trained":[298],"parameters":[299],"reduce":[301],"time":[304]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":13},{"year":2024,"cited_by_count":8},{"year":2023,"cited_by_count":15},{"year":2022,"cited_by_count":16},{"year":2021,"cited_by_count":8},{"year":2020,"cited_by_count":11},{"year":2019,"cited_by_count":1}],"updated_date":"2026-06-24T13:16:06.693445","created_date":"2025-10-10T00:00:00"}
