{"id":"https://openalex.org/W2902516827","doi":"https://doi.org/10.1186/s12911-019-0781-4","title":"Clinical text classification with rule-based features and knowledge-guided convolutional neural networks","display_name":"Clinical text classification with rule-based features and knowledge-guided convolutional neural networks","publication_year":2019,"publication_date":"2019-04-01","ids":{"openalex":"https://openalex.org/W2902516827","doi":"https://doi.org/10.1186/s12911-019-0781-4","mag":"2902516827","pmid":"https://pubmed.ncbi.nlm.nih.gov/30943960"},"language":"en","primary_location":{"id":"doi:10.1186/s12911-019-0781-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-019-0781-4","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/track/pdf/10.1186/s12911-019-0781-4","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcmedinformdecismak.biomedcentral.com/track/pdf/10.1186/s12911-019-0781-4","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101613727","display_name":"Liang Yao","orcid":"https://orcid.org/0000-0002-8637-0760"},"institutions":[{"id":"https://openalex.org/I111979921","display_name":"Northwestern University","ror":"https://ror.org/000e0be47","country_code":"US","type":"education","lineage":["https://openalex.org/I111979921"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Liang Yao","raw_affiliation_strings":["Northwestern University, Chicago 60611, IL, USA"],"affiliations":[{"raw_affiliation_string":"Northwestern University, Chicago 60611, IL, USA","institution_ids":["https://openalex.org/I111979921"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074672910","display_name":"Chengsheng Mao","orcid":"https://orcid.org/0000-0002-1515-9626"},"institutions":[{"id":"https://openalex.org/I111979921","display_name":"Northwestern University","ror":"https://ror.org/000e0be47","country_code":"US","type":"education","lineage":["https://openalex.org/I111979921"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chengsheng Mao","raw_affiliation_strings":["Northwestern University, Chicago 60611, IL, USA"],"affiliations":[{"raw_affiliation_string":"Northwestern University, Chicago 60611, IL, USA","institution_ids":["https://openalex.org/I111979921"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100452550","display_name":"Yuan Luo","orcid":"https://orcid.org/0000-0003-0195-7456"},"institutions":[{"id":"https://openalex.org/I111979921","display_name":"Northwestern University","ror":"https://ror.org/000e0be47","country_code":"US","type":"education","lineage":["https://openalex.org/I111979921"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Yuan Luo","raw_affiliation_strings":["Department of Preventive Medicine, Feinberg School of Medicine, Northwestern University, Chicago 60611, IL, USA. yuan.luo@northwestern.edu","Department of Preventive Medicine, Feinberg School of Medicine, Northwestern University, Chicago 60611, IL, USA"],"affiliations":[{"raw_affiliation_string":"Department of Preventive Medicine, Feinberg School of Medicine, Northwestern University, Chicago 60611, IL, USA. yuan.luo@northwestern.edu","institution_ids":[]},{"raw_affiliation_string":"Department of Preventive Medicine, Feinberg School of Medicine, Northwestern University, Chicago 60611, IL, USA","institution_ids":["https://openalex.org/I111979921"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5100452550"],"corresponding_institution_ids":["https://openalex.org/I111979921"],"apc_list":{"value":1570,"currency":"GBP","value_usd":1925},"apc_paid":{"value":1570,"currency":"GBP","value_usd":1925},"fwci":6.4412,"has_fulltext":true,"cited_by_count":153,"citation_normalized_percentile":{"value":0.97543484,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"19","issue":"S3","first_page":"71","last_page":"71"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8046376705169678},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.7169774174690247},{"id":"https://openalex.org/keywords/unified-medical-language-system","display_name":"Unified Medical Language System","score":0.7048690915107727},{"id":"https://openalex.org/keywords/feature-engineering","display_name":"Feature engineering","score":0.6872152090072632},{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.6784650683403015},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.5399968028068542},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.5296953320503235},{"id":"https://openalex.org/keywords/health-informatics","display_name":"Health informatics","score":0.486608624458313},{"id":"https://openalex.org/keywords/feature-learning","display_name":"Feature learning","score":0.48381608724594116},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.4820040762424469},{"id":"https://openalex.org/keywords/domain-knowledge","display_name":"Domain knowledge","score":0.46118786931037903},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.4460224509239197},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.42661458253860474}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8046376705169678},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.7169774174690247},{"id":"https://openalex.org/C69505689","wikidata":"https://www.wikidata.org/wiki/Q455338","display_name":"Unified Medical Language System","level":2,"score":0.7048690915107727},{"id":"https://openalex.org/C2778827112","wikidata":"https://www.wikidata.org/wiki/Q22245680","display_name":"Feature engineering","level":3,"score":0.6872152090072632},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.6784650683403015},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.5399968028068542},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.5296953320503235},{"id":"https://openalex.org/C145642194","wikidata":"https://www.wikidata.org/wiki/Q870895","display_name":"Health informatics","level":3,"score":0.486608624458313},{"id":"https://openalex.org/C59404180","wikidata":"https://www.wikidata.org/wiki/Q17013334","display_name":"Feature learning","level":2,"score":0.48381608724594116},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.4820040762424469},{"id":"https://openalex.org/C207685749","wikidata":"https://www.wikidata.org/wiki/Q2088941","display_name":"Domain knowledge","level":2,"score":0.46118786931037903},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.4460224509239197},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.42661458253860474},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C138816342","wikidata":"https://www.wikidata.org/wiki/Q189603","display_name":"Public health","level":2,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009765","descriptor_name":"Obesity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009765","descriptor_name":"Obesity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009765","descriptor_name":"Obesity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017432","descriptor_name":"Unified Medical Language System","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017432","descriptor_name":"Unified Medical Language System","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017432","descriptor_name":"Unified Medical Language System","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059019","descriptor_name":"Clinical Coding","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D059019","descriptor_name":"Clinical Coding","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D059019","descriptor_name":"Clinical Coding","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12911-019-0781-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-019-0781-4","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/track/pdf/10.1186/s12911-019-0781-4","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},{"id":"pmid:30943960","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30943960","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC medical informatics and decision making","raw_type":null},{"id":"pmh:oai:doaj.org/article:18e0f93e7be44f16b2648cfac22112fd","is_oa":true,"landing_page_url":"https://doaj.org/article/18e0f93e7be44f16b2648cfac22112fd","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Medical Informatics and Decision Making, Vol 19, Iss S3, Pp 31-39 (2019)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:5446896","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6448186","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12911-019-0781-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-019-0781-4","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/track/pdf/10.1186/s12911-019-0781-4","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.7900000214576721,"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education"}],"awards":[{"id":"https://openalex.org/G1287797271","display_name":null,"funder_award_id":"LM008748","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2053124063","display_name":null,"funder_award_id":"U54LM008748","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2671397083","display_name":null,"funder_award_id":"1R21LM012618-01","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6218964800","display_name":null,"funder_award_id":"R21LM012618","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G817082336","display_name":null,"funder_award_id":"R21LM012618-01","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320309480","display_name":"Nvidia","ror":"https://ror.org/03jdj4y14"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2902516827.pdf","grobid_xml":"https://content.openalex.org/works/W2902516827.grobid-xml"},"referenced_works_count":51,"referenced_works":["https://openalex.org/W96276655","https://openalex.org/W569478347","https://openalex.org/W1502957213","https://openalex.org/W1522301498","https://openalex.org/W1775135849","https://openalex.org/W1847618513","https://openalex.org/W1996582212","https://openalex.org/W2002514548","https://openalex.org/W2025428542","https://openalex.org/W2042954874","https://openalex.org/W2096951189","https://openalex.org/W2097878768","https://openalex.org/W2099307202","https://openalex.org/W2100676408","https://openalex.org/W2109206523","https://openalex.org/W2122402213","https://openalex.org/W2132724073","https://openalex.org/W2148242237","https://openalex.org/W2157549840","https://openalex.org/W2159583324","https://openalex.org/W2168041406","https://openalex.org/W2285122704","https://openalex.org/W2396881363","https://openalex.org/W2398489001","https://openalex.org/W2402144811","https://openalex.org/W2469314752","https://openalex.org/W2470673105","https://openalex.org/W2488984245","https://openalex.org/W2489487449","https://openalex.org/W2557283755","https://openalex.org/W2574904969","https://openalex.org/W2622687477","https://openalex.org/W2623399293","https://openalex.org/W2626517634","https://openalex.org/W2726375170","https://openalex.org/W2738242267","https://openalex.org/W2753068549","https://openalex.org/W2772121968","https://openalex.org/W2786235347","https://openalex.org/W2789244308","https://openalex.org/W2890395128","https://openalex.org/W2912503608","https://openalex.org/W2930957955","https://openalex.org/W2949174300","https://openalex.org/W2949300694","https://openalex.org/W2949541494","https://openalex.org/W2950133940","https://openalex.org/W2950562763","https://openalex.org/W2963078493","https://openalex.org/W2963355447","https://openalex.org/W6713134421"],"related_works":["https://openalex.org/W79619734","https://openalex.org/W2010487328","https://openalex.org/W3199964822","https://openalex.org/W4232132981","https://openalex.org/W4238046985","https://openalex.org/W3164948662","https://openalex.org/W3003242282","https://openalex.org/W3153597579","https://openalex.org/W3012824888","https://openalex.org/W2998249245"],"abstract_inverted_index":{"We":[0],"showed":[1],"that":[2],"CNN":[3,28],"model":[4],"is":[5,30],"powerful":[6],"for":[7,17],"learning":[8],"effective":[9],"hidden":[10],"features,":[11],"and":[12],"CUIs":[13],"embeddings":[14],"are":[15],"helpful":[16],"building":[18],"clinical":[19],"text":[20],"representations.":[21],"This":[22],"shows":[23],"integrating":[24],"domain":[25],"knowledge":[26],"into":[27],"models":[29],"promising.":[31]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":12},{"year":2024,"cited_by_count":35},{"year":2023,"cited_by_count":26},{"year":2022,"cited_by_count":16},{"year":2021,"cited_by_count":22},{"year":2020,"cited_by_count":29},{"year":2019,"cited_by_count":8},{"year":2018,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
