{"id":"https://openalex.org/W2883840159","doi":"https://doi.org/10.1186/s12911-018-0646-2","title":"Implementation of informatics for integrating biology and the bedside (i2b2) platform as Docker containers","display_name":"Implementation of informatics for integrating biology and the bedside (i2b2) platform as Docker containers","publication_year":2018,"publication_date":"2018-07-16","ids":{"openalex":"https://openalex.org/W2883840159","doi":"https://doi.org/10.1186/s12911-018-0646-2","mag":"2883840159","pmid":"https://pubmed.ncbi.nlm.nih.gov/30012140"},"language":"en","primary_location":{"id":"doi:10.1186/s12911-018-0646-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-018-0646-2","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/track/pdf/10.1186/s12911-018-0646-2","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcmedinformdecismak.biomedcentral.com/track/pdf/10.1186/s12911-018-0646-2","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5041082275","display_name":"Kavishwar B. Wagholikar","orcid":"https://orcid.org/0000-0002-6219-861X"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I4210087915","display_name":"Massachusetts General Hospital","ror":"https://ror.org/002pd6e78","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210087915","https://openalex.org/I48633490"]},{"id":"https://openalex.org/I4210156643","display_name":"Harvard Global Health Institute","ror":"https://ror.org/055avk103","country_code":"US","type":"education","lineage":["https://openalex.org/I4210156643"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Kavishwar B. Wagholikar","raw_affiliation_strings":["Harvard Medical School, Boston, MA, USA. kwagholikar@mgh.harvard.edu","Massachusetts General Hospital, Boston, MA, USA. kwagholikar@mgh.harvard.edu","Massachusetts General Hospital, Boston, MA, USA"],"affiliations":[{"raw_affiliation_string":"Harvard Medical School, Boston, MA, USA. kwagholikar@mgh.harvard.edu","institution_ids":["https://openalex.org/I136199984","https://openalex.org/I4210156643"]},{"raw_affiliation_string":"Massachusetts General Hospital, Boston, MA, USA. kwagholikar@mgh.harvard.edu","institution_ids":["https://openalex.org/I4210087915"]},{"raw_affiliation_string":"Massachusetts General Hospital, Boston, MA, USA","institution_ids":["https://openalex.org/I4210087915"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039031137","display_name":"Pralav Dessai","orcid":null},"institutions":[{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Pralav Dessai","raw_affiliation_strings":["University of California Los Angeles, Los Angeles, CA, USA"],"affiliations":[{"raw_affiliation_string":"University of California Los Angeles, Los Angeles, CA, USA","institution_ids":["https://openalex.org/I161318765"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042425549","display_name":"Javier Mart\u00ednez\u2010Sanz","orcid":"https://orcid.org/0000-0003-2020-3908"},"institutions":[{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Javier Sanz","raw_affiliation_strings":["University of California Los Angeles, Los Angeles, CA, USA"],"affiliations":[{"raw_affiliation_string":"University of California Los Angeles, Los Angeles, CA, USA","institution_ids":["https://openalex.org/I161318765"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031226342","display_name":"Michael Mendis","orcid":null},"institutions":[{"id":"https://openalex.org/I48633490","display_name":"Mass General Brigham","ror":"https://ror.org/04py2rh25","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I48633490"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael E. Mendis","raw_affiliation_strings":["Partners Healthcare, Boston, MA, USA"],"affiliations":[{"raw_affiliation_string":"Partners Healthcare, Boston, MA, USA","institution_ids":["https://openalex.org/I48633490"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063670687","display_name":"Douglas S. Bell","orcid":"https://orcid.org/0000-0002-5063-8294"},"institutions":[{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Douglas S. Bell","raw_affiliation_strings":["University of California Los Angeles, Los Angeles, CA, USA"],"affiliations":[{"raw_affiliation_string":"University of California Los Angeles, Los Angeles, CA, USA","institution_ids":["https://openalex.org/I161318765"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5087242254","display_name":"Shawn N. Murphy","orcid":null},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I4210087915","display_name":"Massachusetts General Hospital","ror":"https://ror.org/002pd6e78","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210087915","https://openalex.org/I48633490"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shawn N. Murphy","raw_affiliation_strings":["Harvard Medical School, Boston, MA, USA","Massachusetts General Hospital, Boston, MA, USA"],"affiliations":[{"raw_affiliation_string":"Harvard Medical School, Boston, MA, USA","institution_ids":["https://openalex.org/I136199984"]},{"raw_affiliation_string":"Massachusetts General Hospital, Boston, MA, USA","institution_ids":["https://openalex.org/I4210087915"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5041082275"],"corresponding_institution_ids":["https://openalex.org/I136199984","https://openalex.org/I4210087915","https://openalex.org/I4210156643"],"apc_list":{"value":1570,"currency":"GBP","value_usd":1925},"apc_paid":{"value":1570,"currency":"GBP","value_usd":1925},"fwci":2.733,"has_fulltext":true,"cited_by_count":11,"citation_normalized_percentile":{"value":0.93289263,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"18","issue":"1","first_page":"66","last_page":"66"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9843999743461609,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.9842000007629395,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5443737506866455},{"id":"https://openalex.org/keywords/container","display_name":"Container (type theory)","score":0.47647377848625183},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.4593823552131653},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3510913848876953},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.34541594982147217},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.14674875140190125}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5443737506866455},{"id":"https://openalex.org/C2781018962","wikidata":"https://www.wikidata.org/wiki/Q5164884","display_name":"Container (type theory)","level":2,"score":0.47647377848625183},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.4593823552131653},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3510913848876953},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.34541594982147217},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.14674875140190125},{"id":"https://openalex.org/C78519656","wikidata":"https://www.wikidata.org/wiki/Q101333","display_name":"Mechanical engineering","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008491","descriptor_name":"Medical Informatics Applications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008491","descriptor_name":"Medical Informatics Applications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008491","descriptor_name":"Medical Informatics Applications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008492","descriptor_name":"Medical Informatics Computing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008492","descriptor_name":"Medical Informatics Computing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008492","descriptor_name":"Medical Informatics Computing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019095","descriptor_name":"Point-of-Care Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019095","descriptor_name":"Point-of-Care Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019095","descriptor_name":"Point-of-Care Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1186/s12911-018-0646-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-018-0646-2","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/track/pdf/10.1186/s12911-018-0646-2","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},{"id":"pmid:30012140","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30012140","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC medical informatics and decision making","raw_type":null},{"id":"pmh:ark:/13030/qt4q63450x","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:doaj.org/article:c225b2a8b4f84b25848386445b928beb","is_oa":true,"landing_page_url":"https://doaj.org/article/c225b2a8b4f84b25848386445b928beb","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Medical Informatics and Decision Making, Vol 18, Iss 1, Pp 1-6 (2018)","raw_type":"article"},{"id":"pmh:oai:escholarship.org/ark:/13030/qt4q63450x","is_oa":false,"landing_page_url":"https://escholarship.org/uc/item/4q63450x","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC medical informatics and decision making, vol 18, iss 1","raw_type":"article"},{"id":"pmh:oai:europepmc.org:5006254","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6048900","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12911-018-0646-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-018-0646-2","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/track/pdf/10.1186/s12911-018-0646-2","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.44999998807907104,"id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G1188832971","display_name":null,"funder_award_id":"R00-LM011575-04","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G606484269","display_name":null,"funder_award_id":"R00-LM011575","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G947657586","display_name":null,"funder_award_id":"R01-HG009174","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"}],"funders":[{"id":"https://openalex.org/F4320310598","display_name":"Amazon Web Services","ror":"https://ror.org/04mv4n011"},{"id":"https://openalex.org/F4320332622","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2883840159.pdf","grobid_xml":"https://content.openalex.org/works/W2883840159.grobid-xml"},"referenced_works_count":24,"referenced_works":["https://openalex.org/W92935597","https://openalex.org/W1574680346","https://openalex.org/W1594279064","https://openalex.org/W2041179993","https://openalex.org/W2052350794","https://openalex.org/W2075174112","https://openalex.org/W2081488649","https://openalex.org/W2096259842","https://openalex.org/W2104608657","https://openalex.org/W2150917983","https://openalex.org/W2157628974","https://openalex.org/W2166476512","https://openalex.org/W2300136894","https://openalex.org/W2314821163","https://openalex.org/W2335574276","https://openalex.org/W2397407935","https://openalex.org/W2418573010","https://openalex.org/W2737733838","https://openalex.org/W2750213695","https://openalex.org/W2769169282","https://openalex.org/W2949612930","https://openalex.org/W3113043731","https://openalex.org/W3142586136","https://openalex.org/W4233586970"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2618286804","https://openalex.org/W2329643025","https://openalex.org/W2002770077","https://openalex.org/W3131163342","https://openalex.org/W2092256833","https://openalex.org/W2142369114","https://openalex.org/W2361728394"],"abstract_inverted_index":{"Containerization":[0],"offers":[1],"the":[2,6,18,45,56],"potential":[3],"to":[4,17,37,47,64],"package":[5],"i2b2":[7,25,41,57],"platform":[8,62],"components":[9,53],"into":[10],"standalone":[11],"executable":[12],"packages":[13],"that":[14,32,54],"are":[15],"agnostic":[16],"underlying":[19],"host":[20],"operating":[21],"system.":[22],"By":[23],"releasing":[24],"as":[26],"a":[27,39,65],"Docker":[28],"container,":[29],"we":[30],"anticipate":[31],"users":[33],"will":[34],"be":[35],"able":[36],"create":[38],"working":[40],"hive":[42],"installation":[43],"without":[44],"need":[46],"download,":[48],"compile,":[49],"and":[50],"configure":[51],"individual":[52],"constitute":[55],"cells,":[58],"thus":[59],"making":[60],"this":[61],"accessible":[63],"greater":[66],"number":[67],"of":[68],"institutions.":[69]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
