{"id":"https://openalex.org/W2883904729","doi":"https://doi.org/10.1186/s12911-018-0636-4","title":"An ontology-guided semantic data integration framework to support integrative data analysis of cancer survival","display_name":"An ontology-guided semantic data integration framework to support integrative data analysis of cancer survival","publication_year":2018,"publication_date":"2018-07-01","ids":{"openalex":"https://openalex.org/W2883904729","doi":"https://doi.org/10.1186/s12911-018-0636-4","mag":"2883904729","pmid":"https://pubmed.ncbi.nlm.nih.gov/30066664"},"language":"en","primary_location":{"id":"doi:10.1186/s12911-018-0636-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-018-0636-4","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/track/pdf/10.1186/s12911-018-0636-4","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcmedinformdecismak.biomedcentral.com/track/pdf/10.1186/s12911-018-0636-4","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5039891212","display_name":"Hansi Zhang","orcid":"https://orcid.org/0000-0003-4585-0888"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Hansi Zhang","raw_affiliation_strings":["Department of Health Outcomes and Biomedical Informatics, College of Medicine, University of Florida, Clinical and Translational Research Building Suite 3228, 2004 Mowry Road, PO Box 100219, Gainesville, FL, 32610-0219, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Health Outcomes and Biomedical Informatics, College of Medicine, University of Florida, Clinical and Translational Research Building Suite 3228, 2004 Mowry Road, PO Box 100219, Gainesville, FL, 32610-0219, USA","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052505769","display_name":"Yi Guo","orcid":"https://orcid.org/0000-0003-0587-4105"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yi Guo","raw_affiliation_strings":["Department of Health Outcomes and Biomedical Informatics, College of Medicine, University of Florida, Clinical and Translational Research Building Suite 3228, 2004 Mowry Road, PO Box 100219, Gainesville, FL, 32610-0219, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Health Outcomes and Biomedical Informatics, College of Medicine, University of Florida, Clinical and Translational Research Building Suite 3228, 2004 Mowry Road, PO Box 100219, Gainesville, FL, 32610-0219, USA","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100340657","display_name":"Qian Li","orcid":"https://orcid.org/0000-0003-1529-7014"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Qian Li","raw_affiliation_strings":["Department of Health Outcomes and Biomedical Informatics, College of Medicine, University of Florida, Clinical and Translational Research Building Suite 3228, 2004 Mowry Road, PO Box 100219, Gainesville, FL, 32610-0219, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Health Outcomes and Biomedical Informatics, College of Medicine, University of Florida, Clinical and Translational Research Building Suite 3228, 2004 Mowry Road, PO Box 100219, Gainesville, FL, 32610-0219, USA","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020154592","display_name":"Thomas J. George","orcid":"https://orcid.org/0000-0002-6249-9180"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Thomas J. George","raw_affiliation_strings":["Division of Hematology and Oncology, Department of Medicine, College of Medicine, University of Florida, Gainesville, Florida, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Hematology and Oncology, Department of Medicine, College of Medicine, University of Florida, Gainesville, Florida, USA","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026803588","display_name":"Elizabeth Shenkman","orcid":"https://orcid.org/0000-0003-4903-1804"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Elizabeth Shenkman","raw_affiliation_strings":["Department of Health Outcomes and Biomedical Informatics, College of Medicine, University of Florida, Clinical and Translational Research Building Suite 3228, 2004 Mowry Road, PO Box 100219, Gainesville, FL, 32610-0219, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Health Outcomes and Biomedical Informatics, College of Medicine, University of Florida, Clinical and Translational Research Building Suite 3228, 2004 Mowry Road, PO Box 100219, Gainesville, FL, 32610-0219, USA","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049702218","display_name":"Fran\u00e7ois Modave","orcid":"https://orcid.org/0000-0003-4366-0757"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Fran\u00e7ois Modave","raw_affiliation_strings":["Department of Health Outcomes and Biomedical Informatics, College of Medicine, University of Florida, Clinical and Translational Research Building Suite 3228, 2004 Mowry Road, PO Box 100219, Gainesville, FL, 32610-0219, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Health Outcomes and Biomedical Informatics, College of Medicine, University of Florida, Clinical and Translational Research Building Suite 3228, 2004 Mowry Road, PO Box 100219, Gainesville, FL, 32610-0219, USA","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5030951014","display_name":"Jiang Bian","orcid":"https://orcid.org/0000-0002-2238-5429"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jiang Bian","raw_affiliation_strings":["Department of Health Outcomes and Biomedical Informatics, College of Medicine, University of Florida, Clinical and Translational Research Building Suite 3228, 2004 Mowry Road, PO Box 100219, Gainesville, FL, 32610-0219, USA. bianjiang@ufl.edu","Department of Health Outcomes and Biomedical Informatics, College of Medicine, University of Florida, Clinical and Translational Research Building Suite 3228, 2004 Mowry Road, PO Box 100219, Gainesville, FL, 32610-0219, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Health Outcomes and Biomedical Informatics, College of Medicine, University of Florida, Clinical and Translational Research Building Suite 3228, 2004 Mowry Road, PO Box 100219, Gainesville, FL, 32610-0219, USA. bianjiang@ufl.edu","institution_ids":[]},{"raw_affiliation_string":"Department of Health Outcomes and Biomedical Informatics, College of Medicine, University of Florida, Clinical and Translational Research Building Suite 3228, 2004 Mowry Road, PO Box 100219, Gainesville, FL, 32610-0219, USA","institution_ids":["https://openalex.org/I33213144"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5039891212"],"corresponding_institution_ids":["https://openalex.org/I33213144"],"apc_list":{"value":1570,"currency":"GBP","value_usd":1925},"apc_paid":{"value":1570,"currency":"GBP","value_usd":1925},"fwci":3.2477,"has_fulltext":true,"cited_by_count":60,"citation_normalized_percentile":{"value":0.93109817,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":99},"biblio":{"volume":"18","issue":"S2","first_page":"41","last_page":"41"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.5497000217437744,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.5497000217437744,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.2906999886035919,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11719","display_name":"Data Quality and Management","score":0.03590000048279762,"subfield":{"id":"https://openalex.org/subfields/1803","display_name":"Management Science and Operations Research"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7765682935714722},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.724877119064331},{"id":"https://openalex.org/keywords/ontology-based-data-integration","display_name":"Ontology-based data integration","score":0.7160670161247253},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.6838928461074829},{"id":"https://openalex.org/keywords/semantic-integration","display_name":"Semantic integration","score":0.6337970495223999},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5183485746383667},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5078888535499573},{"id":"https://openalex.org/keywords/data-mapping","display_name":"Data mapping","score":0.4721182584762573},{"id":"https://openalex.org/keywords/idef1x","display_name":"IDEF1X","score":0.43656855821609497},{"id":"https://openalex.org/keywords/semantic-heterogeneity","display_name":"Semantic heterogeneity","score":0.4299517273902893},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3733149766921997},{"id":"https://openalex.org/keywords/semantic-computing","display_name":"Semantic computing","score":0.27721741795539856},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.27710872888565063},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.2198367714881897}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7765682935714722},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.724877119064331},{"id":"https://openalex.org/C22550185","wikidata":"https://www.wikidata.org/wiki/Q7095047","display_name":"Ontology-based data integration","level":3,"score":0.7160670161247253},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.6838928461074829},{"id":"https://openalex.org/C110903229","wikidata":"https://www.wikidata.org/wiki/Q7449064","display_name":"Semantic integration","level":4,"score":0.6337970495223999},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5183485746383667},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5078888535499573},{"id":"https://openalex.org/C137314826","wikidata":"https://www.wikidata.org/wiki/Q2330408","display_name":"Data mapping","level":2,"score":0.4721182584762573},{"id":"https://openalex.org/C196621874","wikidata":"https://www.wikidata.org/wiki/Q385210","display_name":"IDEF1X","level":4,"score":0.43656855821609497},{"id":"https://openalex.org/C2778180026","wikidata":"https://www.wikidata.org/wiki/Q18378163","display_name":"Semantic heterogeneity","level":4,"score":0.4299517273902893},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3733149766921997},{"id":"https://openalex.org/C511149849","wikidata":"https://www.wikidata.org/wiki/Q7449051","display_name":"Semantic computing","level":3,"score":0.27721741795539856},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.27710872888565063},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.2198367714881897},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012106","descriptor_name":"Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012106","descriptor_name":"Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012106","descriptor_name":"Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016019","descriptor_name":"Survival Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016019","descriptor_name":"Survival Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016019","descriptor_name":"Survival Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1186/s12911-018-0636-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-018-0636-4","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/track/pdf/10.1186/s12911-018-0636-4","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},{"id":"pmid:30066664","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30066664","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC medical informatics and decision making","raw_type":null},{"id":"pmh:oai:UFDC:AA00064106_00001","is_oa":true,"landing_page_url":"http://ufdc.ufl.edu/AA00064106/00001","pdf_url":null,"source":{"id":"https://openalex.org/S4306400471","display_name":"University of Florida Digital Collections (University of Florida)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I33213144","host_organization_name":"University of Florida","host_organization_lineage":["https://openalex.org/I33213144"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"mixed material"},{"id":"pmh:oai:doaj.org/article:19466a0e94b04b2b90a43aa06457525e","is_oa":true,"landing_page_url":"https://doaj.org/article/19466a0e94b04b2b90a43aa06457525e","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Medical Informatics and Decision Making, Vol 18, Iss S2, Pp 129-147 (2018)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:5024606","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC6069766","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:6069766","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6069766","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Med Inform Decis Mak","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12911-018-0636-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-018-0636-4","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/track/pdf/10.1186/s12911-018-0636-4","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.5,"id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G3035549695","display_name":null,"funder_award_id":"CDRN-1501-26692","funder_id":"https://openalex.org/F4320308927","funder_display_name":"Patient-Centered Outcomes Research Institute"},{"id":"https://openalex.org/G6138076438","display_name":null,"funder_award_id":"CDRN-1501-26692","funder_id":"https://openalex.org/F4320310009","funder_display_name":"University of Florida"},{"id":"https://openalex.org/G6806891469","display_name":null,"funder_award_id":"UL1TR001427","funder_id":"https://openalex.org/F4320310009","funder_display_name":"University of Florida"},{"id":"https://openalex.org/G7211153767","display_name":null,"funder_award_id":"UL1TR001427","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320308927","display_name":"Patient-Centered Outcomes Research Institute","ror":"https://ror.org/014q65q44"},{"id":"https://openalex.org/F4320309360","display_name":"Florida Department of Health","ror":"https://ror.org/03e1xkn26"},{"id":"https://openalex.org/F4320310009","display_name":"University of Florida","ror":"https://ror.org/02y3ad647"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2883904729.pdf","grobid_xml":"https://content.openalex.org/works/W2883904729.grobid-xml"},"referenced_works_count":50,"referenced_works":["https://openalex.org/W147140525","https://openalex.org/W164710540","https://openalex.org/W282310047","https://openalex.org/W1484191262","https://openalex.org/W1533619407","https://openalex.org/W1584585813","https://openalex.org/W1601038846","https://openalex.org/W1620530708","https://openalex.org/W1802346448","https://openalex.org/W1819037663","https://openalex.org/W1958805117","https://openalex.org/W1964986019","https://openalex.org/W1971676632","https://openalex.org/W1980624726","https://openalex.org/W1987704812","https://openalex.org/W2004389753","https://openalex.org/W2067428007","https://openalex.org/W2105303457","https://openalex.org/W2106791611","https://openalex.org/W2108798001","https://openalex.org/W2117632114","https://openalex.org/W2123152121","https://openalex.org/W2127789342","https://openalex.org/W2131941936","https://openalex.org/W2137079713","https://openalex.org/W2154835470","https://openalex.org/W2161549461","https://openalex.org/W2161693184","https://openalex.org/W2168401488","https://openalex.org/W2261812172","https://openalex.org/W2299775049","https://openalex.org/W2395616816","https://openalex.org/W2397523901","https://openalex.org/W2399721281","https://openalex.org/W2519236007","https://openalex.org/W2549843171","https://openalex.org/W2557225437","https://openalex.org/W2570618306","https://openalex.org/W2611454316","https://openalex.org/W2746456918","https://openalex.org/W2767068143","https://openalex.org/W2769983762","https://openalex.org/W2770227545","https://openalex.org/W2774698037","https://openalex.org/W2783393271","https://openalex.org/W2797721205","https://openalex.org/W2797999339","https://openalex.org/W3025660579","https://openalex.org/W6634615976","https://openalex.org/W7074175326"],"related_works":["https://openalex.org/W2375662764","https://openalex.org/W2144482357","https://openalex.org/W1976716227","https://openalex.org/W2159517577","https://openalex.org/W2394307504","https://openalex.org/W2352204529","https://openalex.org/W2352959755","https://openalex.org/W153770410","https://openalex.org/W3007667068","https://openalex.org/W2350496480"],"abstract_inverted_index":{"BACKGROUND:":[0],"Cancer":[1,84,96],"is":[2,39],"the":[3,10,81,94,101,112,122,149,164,177,209,220,238,246,258,271,286,293,307],"second":[4],"leading":[5],"cause":[6],"of":[7,260,285,306],"death":[8],"in":[9,76,115,137,163,173,245,295],"United":[11],"States,":[12],"exceeded":[13],"only":[14,256],"by":[15],"heart":[16],"disease.":[17],"Extant":[18],"cancer":[19,165],"survival":[20,166],"analyses":[21],"have":[22],"primarily":[23],"focused":[24],"on":[25,159],"individual-level":[26],"factors":[27,54,229],"due":[28],"to":[29,42,48,63,110,118,131,148,175,197,201,215,225,236,282],"limited":[30],"data":[31,36,44,69,103,113,128,136,178,199,239,252,261],"availability":[32],"from":[33,45,276],"a":[34,40,127,144,184,193,264],"single":[35],"source.":[37],"There":[38],"need":[41],"integrate":[43,64],"different":[46,116,277],"sources":[47,117,278],"simultaneously":[49],"study":[50],"as":[51,55,93],"much":[52],"risk":[53],"possible.":[56],"Thus,":[57],"we":[58,79,106,125,168,182],"proposed":[59],"an":[60,250,290],"ontology-based":[61,251],"approach":[62,254,291],"heterogeneous":[65],"datasets":[66],"addressing":[67,187],"key":[68,188],"integration":[70,104,129,179,189,242,253,300],"challenges.":[71],"METHODS:":[72],"Following":[73],"best":[74],"practices":[75],"ontology":[77],"engineering,":[78],"created":[80,107,169,183],"Ontology":[82],"for":[83],"Research":[85],"Variables":[86],"(OCRV)":[87],"adapting":[88],"existing":[89],"semantic":[90,141,210,272],"resources":[91],"such":[92],"National":[95],"Institute":[97],"(NCI)":[98],"Thesaurus.":[99],"Using":[100,249],"global-as-view":[102],"approach,":[105],"mapping":[108],"axioms":[109],"link":[111],"elements":[114],"OCRV.":[119],"Implemented":[120],"upon":[121],"Ontop":[123],"platform,":[124],"built":[126],"pipeline":[130],"query,":[132],"extract,":[133],"and":[134,204,217,227,241,280,299,302],"transform":[135],"relational":[138],"databases":[139],"using":[140,192],"queries":[142],"into":[143],"pooled":[145],"dataset":[146],"according":[147],"downstream":[150],"multi-level":[151],"Integrative":[152],"Data":[153],"Analysis":[154],"(IDA)":[155],"needs.":[156],"RESULTS:":[157],"Based":[158],"our":[160],"use":[161],"cases":[162],"IDA,":[167],"tailored":[170],"ontological":[171],"structures":[172],"OCRV":[174],"facilitate":[176],"tasks.":[180],"Specifically,":[181],"flexible":[185],"framework":[186],"challenges:":[190],"(1)":[191],"shared,":[194],"controlled":[195,266],"vocabulary":[196],"make":[198],"understandable":[200],"both":[202],"human":[203],"computers,":[205],"(2)":[206],"explicitly":[207],"modeling":[208],"relationships":[211,273],"makes":[212,270],"it":[213],"possible":[214],"compute":[216],"reason":[218],"with":[219],"data,":[221],"(3)":[222],"linking":[223],"patients":[224],"contextual":[226],"environmental":[228],"through":[230,263],"geographic":[231],"variables,":[232],"(4)":[233],"being":[234],"able":[235],"document":[237],"manipulation":[240],"processes":[243,301],"clearly":[244],"ontologies.":[247],"CONCLUSIONS:":[248],"not":[255],"standardizes":[257],"definitions":[259],"variables":[262,275],"common,":[265],"vocabulary,":[267],"but":[268],"also":[269],"among":[274],"explicit":[279],"clear":[281],"all":[283],"users":[284],"same":[287],"datasets.":[288],"Such":[289],"resolves":[292],"ambiguity":[294],"variable":[296],"selection,":[297],"extraction":[298],"thus":[303],"improve":[304],"reproducibility":[305],"IDA.":[308]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":10},{"year":2021,"cited_by_count":10},{"year":2020,"cited_by_count":15},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":5}],"updated_date":"2026-05-11T08:15:01.531666","created_date":"2025-10-10T00:00:00"}
