{"id":"https://openalex.org/W2805185296","doi":"https://doi.org/10.1186/s12911-018-0609-7","title":"Automated extraction of Biomarker information from pathology reports","display_name":"Automated extraction of Biomarker information from pathology reports","publication_year":2018,"publication_date":"2018-05-21","ids":{"openalex":"https://openalex.org/W2805185296","doi":"https://doi.org/10.1186/s12911-018-0609-7","mag":"2805185296","pmid":"https://pubmed.ncbi.nlm.nih.gov/29783980"},"language":"en","primary_location":{"id":"doi:10.1186/s12911-018-0609-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-018-0609-7","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/track/pdf/10.1186/s12911-018-0609-7","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcmedinformdecismak.biomedcentral.com/track/pdf/10.1186/s12911-018-0609-7","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100673343","display_name":"J. Lee","orcid":"https://orcid.org/0000-0002-5351-7201"},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Jeongeun Lee","raw_affiliation_strings":["Interdisciplinary Program for Bioengineering, Graduate School, Seoul National Universty, Seoul, Republic of Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Interdisciplinary Program for Bioengineering, Graduate School, Seoul National Universty, Seoul, Republic of Korea","institution_ids":["https://openalex.org/I139264467"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032098636","display_name":"Hyun-Je Song","orcid":"https://orcid.org/0000-0002-9109-2611"},"institutions":[{"id":"https://openalex.org/I31419693","display_name":"Kyungpook National University","ror":"https://ror.org/040c17130","country_code":"KR","type":"education","lineage":["https://openalex.org/I31419693"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Hyun-Je Song","raw_affiliation_strings":["School of Computer Science and Engineering, Kyungpook National University, Daegu, Republic of Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Kyungpook National University, Daegu, Republic of Korea","institution_ids":["https://openalex.org/I31419693"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006574435","display_name":"Eunsil Yoon","orcid":"https://orcid.org/0000-0003-4809-5435"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Eunsil Yoon","raw_affiliation_strings":["PAS1 team, TmaxSoft, Gyeonggi-do, Republic of Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"PAS1 team, TmaxSoft, Gyeonggi-do, Republic of Korea","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042224699","display_name":"Seong-Bae Park","orcid":"https://orcid.org/0000-0002-6453-0348"},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]},{"id":"https://openalex.org/I31419693","display_name":"Kyungpook National University","ror":"https://ror.org/040c17130","country_code":"KR","type":"education","lineage":["https://openalex.org/I31419693"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Seong-Bae Park","raw_affiliation_strings":["Department of Pathology, College of Medicine, Seoul National University, Seoul, Republic of Korea","School of Computer Science and Engineering, Kyungpook National University, Daegu, Republic of Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pathology, College of Medicine, Seoul National University, Seoul, Republic of Korea","institution_ids":["https://openalex.org/I139264467"]},{"raw_affiliation_string":"School of Computer Science and Engineering, Kyungpook National University, Daegu, Republic of Korea","institution_ids":["https://openalex.org/I31419693"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058516635","display_name":"Sung\u2010Hye Park","orcid":"https://orcid.org/0000-0002-8681-1597"},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]},{"id":"https://openalex.org/I31419693","display_name":"Kyungpook National University","ror":"https://ror.org/040c17130","country_code":"KR","type":"education","lineage":["https://openalex.org/I31419693"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Sung-Hye Park","raw_affiliation_strings":["Department of Pathology, College of Medicine, Seoul National University, Seoul, Republic of Korea","School of Computer Science and Engineering, Kyungpook National University, Daegu, Republic of Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pathology, College of Medicine, Seoul National University, Seoul, Republic of Korea","institution_ids":["https://openalex.org/I139264467"]},{"raw_affiliation_string":"School of Computer Science and Engineering, Kyungpook National University, Daegu, Republic of Korea","institution_ids":["https://openalex.org/I31419693"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001916792","display_name":"Jeong\u2010Wook Seo","orcid":"https://orcid.org/0000-0003-0242-1805"},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Jeong-Wook Seo","raw_affiliation_strings":["Department of Pathology, College of Medicine, Seoul National University, Seoul, Republic of Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pathology, College of Medicine, Seoul National University, Seoul, Republic of Korea","institution_ids":["https://openalex.org/I139264467"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010323316","display_name":"Peom Park","orcid":null},"institutions":[{"id":"https://openalex.org/I57664883","display_name":"Ajou University","ror":"https://ror.org/03tzb2h73","country_code":"KR","type":"education","lineage":["https://openalex.org/I57664883"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Peom Park","raw_affiliation_strings":["Department of Industrial Engineering, Ajou University, Suwon, Republic of Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Industrial Engineering, Ajou University, Suwon, Republic of Korea","institution_ids":["https://openalex.org/I57664883"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5051234199","display_name":"Jinwook Choi","orcid":"https://orcid.org/0000-0002-9424-9944"},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]},{"id":"https://openalex.org/I4210123907","display_name":"National University College","ror":"https://ror.org/02hs8e066","country_code":"PR","type":"education","lineage":["https://openalex.org/I4210123907"]}],"countries":["KR","PR"],"is_corresponding":true,"raw_author_name":"Jinwook Choi","raw_affiliation_strings":["Department of Biomedical Engineering, College of Medicine, Seoul National University, Seoul, Republic of Korea. jinchoi@snu.ac.kr","Interdisciplinary Program for Bioengineering, Graduate School, Seoul National Universty, Seoul, Republic of Korea. jinchoi@snu.ac.kr","Department of Biomedical Engineering, College of Medicine, Seoul National University, Seoul, Republic of Korea"],"raw_orcid":"https://orcid.org/0000-0002-9424-9944","affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, College of Medicine, Seoul National University, Seoul, Republic of Korea. jinchoi@snu.ac.kr","institution_ids":["https://openalex.org/I4210123907"]},{"raw_affiliation_string":"Interdisciplinary Program for Bioengineering, Graduate School, Seoul National Universty, Seoul, Republic of Korea. jinchoi@snu.ac.kr","institution_ids":["https://openalex.org/I4210123907"]},{"raw_affiliation_string":"Department of Biomedical Engineering, College of Medicine, Seoul National University, Seoul, Republic of Korea","institution_ids":["https://openalex.org/I139264467"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5051234199"],"corresponding_institution_ids":["https://openalex.org/I139264467","https://openalex.org/I4210123907"],"apc_list":{"value":1570,"currency":"GBP","value_usd":1925},"apc_paid":{"value":1570,"currency":"GBP","value_usd":1925},"fwci":0.928,"has_fulltext":true,"cited_by_count":28,"citation_normalized_percentile":{"value":0.74135022,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"18","issue":"1","first_page":"29","last_page":"29"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.4429999887943268,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.4429999887943268,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.314300000667572,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.07419999688863754,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7400602102279663},{"id":"https://openalex.org/keywords/biomarker","display_name":"Biomarker","score":0.6535061597824097},{"id":"https://openalex.org/keywords/parsing","display_name":"Parsing","score":0.590694785118103},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5440421104431152},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.47771501541137695},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.4622267484664917},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.45773935317993164},{"id":"https://openalex.org/keywords/surgical-pathology","display_name":"Surgical pathology","score":0.44874873757362366},{"id":"https://openalex.org/keywords/normalization","display_name":"Normalization (sociology)","score":0.4154406785964966},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.41123878955841064},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.3689895272254944}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7400602102279663},{"id":"https://openalex.org/C2781197716","wikidata":"https://www.wikidata.org/wiki/Q864574","display_name":"Biomarker","level":2,"score":0.6535061597824097},{"id":"https://openalex.org/C186644900","wikidata":"https://www.wikidata.org/wiki/Q194152","display_name":"Parsing","level":2,"score":0.590694785118103},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5440421104431152},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.47771501541137695},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.4622267484664917},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.45773935317993164},{"id":"https://openalex.org/C194495517","wikidata":"https://www.wikidata.org/wiki/Q7646222","display_name":"Surgical pathology","level":2,"score":0.44874873757362366},{"id":"https://openalex.org/C136886441","wikidata":"https://www.wikidata.org/wiki/Q926129","display_name":"Normalization (sociology)","level":2,"score":0.4154406785964966},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.41123878955841064},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.3689895272254944},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000066491","descriptor_name":"Clinical Decision-Making","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000066491","descriptor_name":"Clinical Decision-Making","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000066491","descriptor_name":"Clinical Decision-Making","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007150","descriptor_name":"Immunohistochemistry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007150","descriptor_name":"Immunohistochemistry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007150","descriptor_name":"Immunohistochemistry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000601","qualifier_name":"surgery","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000601","qualifier_name":"surgery","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000601","qualifier_name":"surgery","is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1186/s12911-018-0609-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-018-0609-7","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/track/pdf/10.1186/s12911-018-0609-7","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},{"id":"pmid:29783980","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29783980","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC medical informatics and decision making","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:5963015","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5963015","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Med Inform Decis Mak","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:d094032f8a3a46c1beacfb8007983cfb","is_oa":false,"landing_page_url":"https://doaj.org/article/d094032f8a3a46c1beacfb8007983cfb","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Medical Informatics and Decision Making, Vol 18, Iss 1, Pp 1-11 (2018)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:4964839","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC5963015","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:s-space.snu.ac.kr:10371/142747","is_oa":false,"landing_page_url":"https://hdl.handle.net/10371/142747","pdf_url":null,"source":{"id":"https://openalex.org/S4306401345","display_name":"Seoul National University Open Repository (Seoul National University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139264467","host_organization_name":"Seoul National University","host_organization_lineage":["https://openalex.org/I139264467"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1186/s12911-018-0609-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-018-0609-7","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/track/pdf/10.1186/s12911-018-0609-7","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.7200000286102295,"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education"}],"awards":[{"id":"https://openalex.org/G1530201019","display_name":null,"funder_award_id":"2010-0028631","funder_id":"https://openalex.org/F4320320671","funder_display_name":"National Research Foundation"},{"id":"https://openalex.org/G488116311","display_name":null,"funder_award_id":"2010-0028631","funder_id":"https://openalex.org/F4320322120","funder_display_name":"National Research Foundation of Korea"},{"id":"https://openalex.org/G8666755096","display_name":null,"funder_award_id":"2010-0028631","funder_id":"https://openalex.org/F4320322030","funder_display_name":"Ministry of Science, ICT and Future Planning"},{"id":"https://openalex.org/G8681962796","display_name":null,"funder_award_id":"A112005","funder_id":"https://openalex.org/F4320322034","funder_display_name":"Ministry of Health and Welfare"}],"funders":[{"id":"https://openalex.org/F4320320671","display_name":"National Research Foundation","ror":"https://ror.org/05s0g1g46"},{"id":"https://openalex.org/F4320322030","display_name":"Ministry of Science, ICT and Future Planning","ror":"https://ror.org/032e49973"},{"id":"https://openalex.org/F4320322034","display_name":"Ministry of Health and Welfare","ror":"https://ror.org/00vxgjw72"},{"id":"https://openalex.org/F4320322120","display_name":"National Research Foundation of Korea","ror":"https://ror.org/013aysd81"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2805185296.pdf","grobid_xml":"https://content.openalex.org/works/W2805185296.grobid-xml"},"referenced_works_count":26,"referenced_works":["https://openalex.org/W8550301","https://openalex.org/W68566686","https://openalex.org/W91108901","https://openalex.org/W1490345952","https://openalex.org/W1816103129","https://openalex.org/W1965786162","https://openalex.org/W1980183403","https://openalex.org/W1982938880","https://openalex.org/W1983766967","https://openalex.org/W2012560661","https://openalex.org/W2023983533","https://openalex.org/W2076424959","https://openalex.org/W2080564894","https://openalex.org/W2081955728","https://openalex.org/W2086063205","https://openalex.org/W2094937180","https://openalex.org/W2135069825","https://openalex.org/W2137853125","https://openalex.org/W2141869602","https://openalex.org/W2145522203","https://openalex.org/W2146089916","https://openalex.org/W2159583324","https://openalex.org/W2162148675","https://openalex.org/W2163738899","https://openalex.org/W2169909923","https://openalex.org/W2418239156"],"related_works":["https://openalex.org/W2591697403","https://openalex.org/W2953716828","https://openalex.org/W2904857019","https://openalex.org/W2944728705","https://openalex.org/W3011538607","https://openalex.org/W2904022177","https://openalex.org/W4321441197","https://openalex.org/W2359348847","https://openalex.org/W4294432981","https://openalex.org/W4321276295"],"abstract_inverted_index":{"BACKGROUND:":[0],"Pathology":[1,68],"reports":[2,48,69,96,234],"are":[3,70,200],"written":[4],"in":[5,191,236],"free-text":[6],"form,":[7],"which":[8,154,240],"precludes":[9],"efficient":[10],"data":[11,37,171,223,229],"gathering.":[12],"We":[13,33],"aimed":[14],"to":[15,130,144,169,204],"overcome":[16],"this":[17],"limitation":[18],"and":[19,77,117,122,213,231,247],"design":[20],"an":[21,183],"automated":[22,44],"system":[23,45],"for":[24,39,63,75,82,113,134,221],"extracting":[25],"biomarker":[26,41,115,160,179,222],"profiles":[27,161,180],"from":[28,125,182],"accumulated":[29],"pathology":[30,95,137,188,196],"reports.":[31,197],"METHODS:":[32],"designed":[34],"a":[35,51,57,79,156],"new":[36],"model":[38],"representing":[40],"knowledge.":[42],"The":[43,85],"parses":[46],"immunohistochemistry":[47,60,127,184],"based":[49,163],"on":[50,92,150,164],"\"slide":[52],"paragraph\"":[53],"unit":[54],"defined":[55],"as":[56],"set":[58],"of":[59,87,97],"findings":[61,189],"obtained":[62,112,162],"the":[64,88,126,141,165,170,174,237],"same":[65],"tissue":[66],"slide.":[67],"parsed":[71],"using":[72,78],"context-free":[73],"grammar":[74],"immunohistochemistry,":[76],"tree-like":[80],"structure":[81],"surgical":[83,136,195],"pathology.":[84],"performance":[86,133],"approach":[89,143,176,220],"was":[90],"validated":[91],"manually":[93],"annotated":[94],"100":[98],"randomly":[99],"selected":[100],"patients":[101],"managed":[102],"at":[103],"Seoul":[104],"National":[105],"University":[106],"Hospital.":[107],"RESULTS:":[108],"High":[109],"F-scores":[110],"were":[111],"parsing":[114,135],"name":[116],"corresponding":[118,187,205],"test":[119],"results":[120],"(0.999":[121],"0.998,":[123],"respectively)":[124],"reports,":[128],"compared":[129],"relatively":[131],"poor":[132],"findings.":[138],"However,":[139],"applying":[140],"proposed":[142,175,219],"our":[145],"single-center":[146],"dataset":[147],"revealed":[148],"information":[149],"221":[151],"unique":[152],"biomarkers,":[153],"represents":[155],"richer":[157],"result":[158],"than":[159],"published":[166],"literature.":[167],"Owing":[168],"representation":[172,230],"model,":[173],"can":[177,232],"associate":[178],"extracted":[181],"report":[185],"with":[186],"listed":[190],"one":[192],"or":[193],"more":[194],"Term":[198],"variations":[199],"resolved":[201],"by":[202,209],"normalization":[203],"preferred":[206],"terms":[207],"determined":[208],"expanded":[210],"dictionary":[211],"look-up":[212],"text":[214],"similarity-based":[215],"search.":[216],"CONCLUSIONS:":[217],"Our":[218],"extraction":[224],"addresses":[225],"key":[226],"limitations":[227],"regarding":[228],"handle":[233],"prepared":[235],"clinical":[238],"setting,":[239],"often":[241],"contain":[242],"incomplete":[243],"sentences,":[244],"typographical":[245],"errors,":[246],"inconsistent":[248],"formatting.":[249]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":4}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
