{"id":"https://openalex.org/W2519041430","doi":"https://doi.org/10.1186/s12911-016-0358-4","title":"An information model for computable cancer phenotypes","display_name":"An information model for computable cancer phenotypes","publication_year":2016,"publication_date":"2016-09-15","ids":{"openalex":"https://openalex.org/W2519041430","doi":"https://doi.org/10.1186/s12911-016-0358-4","mag":"2519041430","pmid":"https://pubmed.ncbi.nlm.nih.gov/27629872"},"language":"en","primary_location":{"id":"doi:10.1186/s12911-016-0358-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-016-0358-4","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/track/pdf/10.1186/s12911-016-0358-4","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcmedinformdecismak.biomedcentral.com/track/pdf/10.1186/s12911-016-0358-4","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5082929960","display_name":"Harry Hochheiser","orcid":"https://orcid.org/0000-0001-8793-9982"},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Harry Hochheiser","raw_affiliation_strings":["Department of Biomedical Informatics, University of Pittsburgh School of Medicine, 5607 Baum Boulevard, Rm 523, Pittsburgh, 15206-3701, PA, USA. harryh@pitt.edu","Intelligent Systems Program, University of Pittsburgh, Pittsburgh, PA, USA. harryh@pitt.edu","Department of Biomedical Informatics, University of Pittsburgh School of Medicine, 5607 Baum Boulevard, Rm 523, Pittsburgh, 15206-3701, PA, USA"],"raw_orcid":"https://orcid.org/0000-0001-8793-9982","affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, University of Pittsburgh School of Medicine, 5607 Baum Boulevard, Rm 523, Pittsburgh, 15206-3701, PA, USA. harryh@pitt.edu","institution_ids":["https://openalex.org/I170201317"]},{"raw_affiliation_string":"Intelligent Systems Program, University of Pittsburgh, Pittsburgh, PA, USA. harryh@pitt.edu","institution_ids":["https://openalex.org/I170201317"]},{"raw_affiliation_string":"Department of Biomedical Informatics, University of Pittsburgh School of Medicine, 5607 Baum Boulevard, Rm 523, Pittsburgh, 15206-3701, PA, USA","institution_ids":["https://openalex.org/I170201317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057123068","display_name":"Melissa Castine","orcid":null},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Melissa Castine","raw_affiliation_strings":["Department of Biomedical Informatics, University of Pittsburgh School of Medicine, 5607 Baum Boulevard, Rm 523, Pittsburgh, 15206-3701, PA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, University of Pittsburgh School of Medicine, 5607 Baum Boulevard, Rm 523, Pittsburgh, 15206-3701, PA, USA","institution_ids":["https://openalex.org/I170201317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056922384","display_name":"David J. Harris","orcid":"https://orcid.org/0000-0003-3332-9307"},"institutions":[{"id":"https://openalex.org/I1288882113","display_name":"Boston Children's Hospital","ror":"https://ror.org/00dvg7y05","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1288882113"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David Harris","raw_affiliation_strings":["Boston Children's Hospital and Harvard Medical School, Boston, MA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Boston Children's Hospital and Harvard Medical School, Boston, MA, USA","institution_ids":["https://openalex.org/I1288882113","https://openalex.org/I136199984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087865794","display_name":"Guergana Savova","orcid":"https://orcid.org/0000-0002-5887-200X"},"institutions":[{"id":"https://openalex.org/I1288882113","display_name":"Boston Children's Hospital","ror":"https://ror.org/00dvg7y05","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1288882113"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Guergana Savova","raw_affiliation_strings":["Boston Children's Hospital and Harvard Medical School, Boston, MA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Boston Children's Hospital and Harvard Medical School, Boston, MA, USA","institution_ids":["https://openalex.org/I1288882113","https://openalex.org/I136199984"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5081418305","display_name":"Rebecca S. Jacobson","orcid":"https://orcid.org/0000-0002-5719-8340"},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]},{"id":"https://openalex.org/I4210128526","display_name":"UPMC Hillman Cancer Center","ror":"https://ror.org/03bw34a45","country_code":"US","type":"facility","lineage":["https://openalex.org/I170201317","https://openalex.org/I4210128526"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rebecca S. Jacobson","raw_affiliation_strings":["Department of Biomedical Informatics, University of Pittsburgh School of Medicine, 5607 Baum Boulevard, Rm 523, Pittsburgh, 15206-3701, PA, USA","Intelligent Systems Program, University of Pittsburgh, Pittsburgh, PA, USA","University of Pittsburgh Cancer Institute, Pittsburgh, PA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, University of Pittsburgh School of Medicine, 5607 Baum Boulevard, Rm 523, Pittsburgh, 15206-3701, PA, USA","institution_ids":["https://openalex.org/I170201317"]},{"raw_affiliation_string":"Intelligent Systems Program, University of Pittsburgh, Pittsburgh, PA, USA","institution_ids":["https://openalex.org/I170201317"]},{"raw_affiliation_string":"University of Pittsburgh Cancer Institute, Pittsburgh, PA, USA","institution_ids":["https://openalex.org/I4210128526"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5082929960"],"corresponding_institution_ids":["https://openalex.org/I170201317"],"apc_list":{"value":1570,"currency":"GBP","value_usd":1925},"apc_paid":{"value":1570,"currency":"GBP","value_usd":1925},"fwci":4.1004,"has_fulltext":true,"cited_by_count":44,"citation_normalized_percentile":{"value":0.94316029,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"16","issue":"1","first_page":"121","last_page":"121"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.8828999996185303,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.8828999996185303,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.03200000151991844,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.009800000116229057,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5917045474052429},{"id":"https://openalex.org/keywords/health-informatics","display_name":"Health informatics","score":0.5389694571495056},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.5254639387130737},{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.5133994817733765},{"id":"https://openalex.org/keywords/precision-medicine","display_name":"Precision medicine","score":0.4721493721008301},{"id":"https://openalex.org/keywords/informatics","display_name":"Informatics","score":0.46334490180015564},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.34938663244247437},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.34935519099235535},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.34547242522239685},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.34203478693962097},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.31331533193588257},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.16041779518127441},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.12669837474822998},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.1190539300441742}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5917045474052429},{"id":"https://openalex.org/C145642194","wikidata":"https://www.wikidata.org/wiki/Q870895","display_name":"Health informatics","level":3,"score":0.5389694571495056},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.5254639387130737},{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.5133994817733765},{"id":"https://openalex.org/C163763905","wikidata":"https://www.wikidata.org/wiki/Q17075943","display_name":"Precision medicine","level":2,"score":0.4721493721008301},{"id":"https://openalex.org/C191630685","wikidata":"https://www.wikidata.org/wiki/Q4027615","display_name":"Informatics","level":2,"score":0.46334490180015564},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.34938663244247437},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.34935519099235535},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.34547242522239685},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.34203478693962097},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.31331533193588257},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.16041779518127441},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.12669837474822998},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.1190539300441742},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.0},{"id":"https://openalex.org/C138816342","wikidata":"https://www.wikidata.org/wiki/Q189603","display_name":"Public health","level":2,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12911-016-0358-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-016-0358-4","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/track/pdf/10.1186/s12911-016-0358-4","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},{"id":"pmid:27629872","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27629872","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC medical informatics and decision making","raw_type":null},{"id":"pmh:oai:dash.harvard.edu:1/29407613","is_oa":true,"landing_page_url":"http://nrs.harvard.edu/urn-3:HUL.InstRepos:29407613","pdf_url":null,"source":{"id":"https://openalex.org/S4306401540","display_name":"Digital Access to Scholarship at Harvard (DASH) (Harvard University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I136199984","host_organization_name":"Harvard University","host_organization_lineage":["https://openalex.org/I136199984"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:5024416","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5024416","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Med Inform Decis Mak","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12911-016-0358-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12911-016-0358-4","pdf_url":"https://bmcmedinformdecismak.biomedcentral.com/track/pdf/10.1186/s12911-016-0358-4","source":{"id":"https://openalex.org/S107516304","display_name":"BMC Medical Informatics and Decision Making","issn_l":"1472-6947","issn":["1472-6947"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Medical Informatics and Decision Making","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1644712247","display_name":null,"funder_award_id":"U24 CA184407","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G2508127175","display_name":null,"funder_award_id":"1U24CA184407","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G3644296431","display_name":null,"funder_award_id":"GM10331601","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4082557964","display_name":null,"funder_award_id":"GM10331601","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2519041430.pdf","grobid_xml":"https://content.openalex.org/works/W2519041430.grobid-xml"},"referenced_works_count":64,"referenced_works":["https://openalex.org/W65833265","https://openalex.org/W85501327","https://openalex.org/W142564969","https://openalex.org/W147140525","https://openalex.org/W164710540","https://openalex.org/W203440368","https://openalex.org/W762501897","https://openalex.org/W1200768482","https://openalex.org/W1500842519","https://openalex.org/W1562643504","https://openalex.org/W1598858201","https://openalex.org/W1608781114","https://openalex.org/W1863753810","https://openalex.org/W1897351414","https://openalex.org/W1907355364","https://openalex.org/W1942577098","https://openalex.org/W1944671275","https://openalex.org/W1970677875","https://openalex.org/W1990983103","https://openalex.org/W2025349319","https://openalex.org/W2026836010","https://openalex.org/W2029232455","https://openalex.org/W2038152972","https://openalex.org/W2047835984","https://openalex.org/W2049151240","https://openalex.org/W2057706627","https://openalex.org/W2057922875","https://openalex.org/W2081722502","https://openalex.org/W2085333314","https://openalex.org/W2087779040","https://openalex.org/W2104655020","https://openalex.org/W2110244395","https://openalex.org/W2111299816","https://openalex.org/W2113105800","https://openalex.org/W2113123047","https://openalex.org/W2113142309","https://openalex.org/W2113783925","https://openalex.org/W2113952938","https://openalex.org/W2121628382","https://openalex.org/W2122210092","https://openalex.org/W2127186124","https://openalex.org/W2134498732","https://openalex.org/W2136186241","https://openalex.org/W2142086840","https://openalex.org/W2143514833","https://openalex.org/W2146089916","https://openalex.org/W2148582973","https://openalex.org/W2149527488","https://openalex.org/W2152550237","https://openalex.org/W2155659776","https://openalex.org/W2161484642","https://openalex.org/W2170282111","https://openalex.org/W2179435758","https://openalex.org/W2179498003","https://openalex.org/W2229356245","https://openalex.org/W2239231358","https://openalex.org/W2251038668","https://openalex.org/W2251220668","https://openalex.org/W2264464635","https://openalex.org/W2497199005","https://openalex.org/W2517922467","https://openalex.org/W4234420900","https://openalex.org/W4244079007","https://openalex.org/W6636421261"],"related_works":["https://openalex.org/W2397677514","https://openalex.org/W1495820741","https://openalex.org/W2914293784","https://openalex.org/W2990177913","https://openalex.org/W1451471413","https://openalex.org/W2138729887","https://openalex.org/W2401910071","https://openalex.org/W4323056170","https://openalex.org/W2126732312","https://openalex.org/W4302329558"],"abstract_inverted_index":{"BACKGROUND:":[0],"Standards,":[1],"methods,":[2],"and":[3,11,20,31,43,53,69,80,105,129,137,174,196,226,249,282,296],"tools":[4,106],"supporting":[5],"the":[6,40,51,89,101,109,159,167,187,230,255],"integration":[7,295],"of":[8,17,27,39,45,55,67,91,103,115,134,148,158,213,223,244,258,293],"clinical":[9,29,46,68,112,219],"data":[10,30,58,71,209],"genomic":[12,33,70],"information":[13,34,65,152,267],"are":[14,72,96],"an":[15,236],"area":[16],"significant":[18],"need":[19],"rapid":[21],"growth":[22],"in":[23,126,218,291],"biomedical":[24],"informatics.":[25],"Integration":[26],"cancer":[28,32,56,92,117,127,140,150,181,207,234],"poses":[35],"unique":[36],"challenges,":[37],"because":[38],"high":[41],"volume":[42],"complexity":[44],"data,":[47],"as":[48,50,177,235],"well":[49],"heterogeneity":[52],"instability":[54],"genome":[57],"when":[59],"compared":[60],"with":[61,139,183,193],"germline":[62],"data.":[63],"Current":[64],"models":[66,95,165],"not":[73],"sufficiently":[74],"expressive":[75],"to":[76,81,99,144,221,240,288],"represent":[77,241],"individual":[78,116,271,286],"observations":[79,84,287],"aggregate":[82],"those":[83],"into":[85,166],"longitudinal":[86],"summaries":[87,222,290],"over":[88],"course":[90,257],"care.":[93],"These":[94],"acutely":[97],"needed":[98,178],"support":[100,292],"development":[102,147],"systems":[104],"for":[107,179,269],"generating":[108],"so":[110],"called":[111],"\"deep":[113],"phenotype\"":[114],"patients,":[118],"a":[119,149,156,259,265,279],"process":[120],"which":[121],"remains":[122],"almost":[123],"entirely":[124],"manual":[125],"research":[128],"precision":[130],"medicine.":[131],"METHODS:":[132],"Reviews":[133],"existing":[135],"ontologies":[136],"interviews":[138],"researchers":[141],"were":[142,191],"used":[143],"inform":[145],"iterative":[146],"phenotype":[151,208,283],"model.":[153],"We":[154,228,263],"translated":[155],"subset":[157],"Fast":[160],"Healthcare":[161],"Interoperability":[162],"Resources":[163],"(FHIR)":[164],"OWL":[168],"2":[169],"Description":[170],"Logic":[171],"(DL)":[172],"representation,":[173],"added":[175],"extensions":[176],"modeling":[180],"phenotypes":[182],"terms":[184],"derived":[185],"from":[186,215],"NCI":[188],"Thesaurus.":[189],"Models":[190],"validated":[192],"domain":[194],"experts":[195],"evaluated":[197],"against":[198],"competency":[199],"questions.":[200],"RESULTS:":[201],"The":[202],"DeepPhe":[203],"Information":[204],"model":[205,231,268],"represents":[206],"at":[210],"increasing":[211],"levels":[212],"abstraction":[214],"mention":[216],"level":[217,275],"documents":[220],"key":[224],"events":[225],"findings.":[227],"describe":[229],"using":[232],"breast":[233],"example,":[237],"depicting":[238],"methods":[239],"phenotypic":[242],"features":[243],"cancers,":[245],"tumors,":[246],"treatment":[247],"regimens,":[248],"specific":[250],"biologic":[251],"behaviors":[252],"that":[253],"span":[254],"entire":[256],"patient's":[260],"disease.":[261],"CONCLUSIONS:":[262],"present":[264],"multi-scale":[266],"representing":[270],"document":[272,274],"mentions,":[273],"classifications,":[276],"episodes":[277],"along":[278],"disease":[280],"course,":[281],"summarization,":[284],"linking":[285],"high-level":[289],"subsequent":[294],"analysis.":[297]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":8},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":8},{"year":2017,"cited_by_count":10},{"year":2016,"cited_by_count":1}],"updated_date":"2026-07-02T09:51:11.867554","created_date":"2025-10-10T00:00:00"}
