{"id":"https://openalex.org/W3104455460","doi":"https://doi.org/10.1186/s12864-020-07011-0","title":"A generalized Robinson-Foulds distance for labeled trees","display_name":"A generalized Robinson-Foulds distance for labeled trees","publication_year":2020,"publication_date":"2020-11-01","ids":{"openalex":"https://openalex.org/W3104455460","doi":"https://doi.org/10.1186/s12864-020-07011-0","mag":"3104455460","pmid":"https://pubmed.ncbi.nlm.nih.gov/33208096"},"language":"en","primary_location":{"id":"doi:10.1186/s12864-020-07011-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12864-020-07011-0","pdf_url":"https://bmcgenomics.biomedcentral.com/track/pdf/10.1186/s12864-020-07011-0","source":{"id":"https://openalex.org/S28614077","display_name":"BMC Genomics","issn_l":"1471-2164","issn":["1471-2164"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Genomics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcgenomics.biomedcentral.com/track/pdf/10.1186/s12864-020-07011-0","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5005685287","display_name":"Samuel Briand","orcid":null},"institutions":[{"id":"https://openalex.org/I70931966","display_name":"Universit\u00e9 de Montr\u00e9al","ror":"https://ror.org/0161xgx34","country_code":"CA","type":"education","lineage":["https://openalex.org/I70931966"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Samuel Briand","raw_affiliation_strings":["Computer Science Department, Universit\u00e9 de Montr\u00e9al, Montreal, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science Department, Universit\u00e9 de Montr\u00e9al, Montreal, Canada","institution_ids":["https://openalex.org/I70931966"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050068380","display_name":"Christophe Dessimoz","orcid":"https://orcid.org/0000-0002-2170-853X"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I4210144746","display_name":"The London College","ror":"https://ror.org/0546ajs61","country_code":"GB","type":"education","lineage":["https://openalex.org/I4210144746"]},{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]},{"id":"https://openalex.org/I97565354","display_name":"University of Lausanne","ror":"https://ror.org/019whta54","country_code":"CH","type":"education","lineage":["https://openalex.org/I97565354"]}],"countries":["CH","GB"],"is_corresponding":true,"raw_author_name":"Christophe Dessimoz","raw_affiliation_strings":["Center for Integrative Genomics, University of Lausanne, Lausanne, Switzerland. c.dessimoz@ucl.ac.uk","Department of Computational Biology, University of Lausanne, Lausanne, Switzerland. c.dessimoz@ucl.ac.uk","Department of Computer Science, University College London, London, UK. c.dessimoz@ucl.ac.uk","Department of Genetics Evolution and Environment, University College London, London, UK. c.dessimoz@ucl.ac.uk","Swiss Institute of Bioinformatics, Lausanne, Switzerland. c.dessimoz@ucl.ac.uk","Department of Computational Biology, University of Lausanne, Lausanne, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Integrative Genomics, University of Lausanne, Lausanne, Switzerland. c.dessimoz@ucl.ac.uk","institution_ids":["https://openalex.org/I97565354"]},{"raw_affiliation_string":"Department of Computational Biology, University of Lausanne, Lausanne, Switzerland. c.dessimoz@ucl.ac.uk","institution_ids":["https://openalex.org/I97565354"]},{"raw_affiliation_string":"Department of Computer Science, University College London, London, UK. c.dessimoz@ucl.ac.uk","institution_ids":["https://openalex.org/I4210144746","https://openalex.org/I45129253"]},{"raw_affiliation_string":"Department of Genetics Evolution and Environment, University College London, London, UK. c.dessimoz@ucl.ac.uk","institution_ids":["https://openalex.org/I45129253"]},{"raw_affiliation_string":"Swiss Institute of Bioinformatics, Lausanne, Switzerland. c.dessimoz@ucl.ac.uk","institution_ids":["https://openalex.org/I12708293"]},{"raw_affiliation_string":"Department of Computational Biology, University of Lausanne, Lausanne, Switzerland","institution_ids":["https://openalex.org/I97565354"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041470344","display_name":"Nadia El-Mabrouk","orcid":"https://orcid.org/0000-0002-5385-1015"},"institutions":[{"id":"https://openalex.org/I70931966","display_name":"Universit\u00e9 de Montr\u00e9al","ror":"https://ror.org/0161xgx34","country_code":"CA","type":"education","lineage":["https://openalex.org/I70931966"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Nadia El-Mabrouk","raw_affiliation_strings":["Computer Science Department, Universit\u00e9 de Montr\u00e9al, Montreal, Canada. mabrouk@iro.umontreal.ca","Computer Science Department, Universit\u00e9 de Montr\u00e9al, Montreal, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science Department, Universit\u00e9 de Montr\u00e9al, Montreal, Canada. mabrouk@iro.umontreal.ca","institution_ids":["https://openalex.org/I70931966"]},{"raw_affiliation_string":"Computer Science Department, Universit\u00e9 de Montr\u00e9al, Montreal, Canada","institution_ids":["https://openalex.org/I70931966"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016796629","display_name":"Manuel Lafond","orcid":"https://orcid.org/0000-0002-5305-7372"},"institutions":[{"id":"https://openalex.org/I135117807","display_name":"Universit\u00e9 de Sherbrooke","ror":"https://ror.org/00kybxq39","country_code":"CA","type":"education","lineage":["https://openalex.org/I135117807"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Manuel Lafond","raw_affiliation_strings":["Computer Science Department, Universit\u00e9 de Sherbrooke, Sherbrooke, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science Department, Universit\u00e9 de Sherbrooke, Sherbrooke, Canada","institution_ids":["https://openalex.org/I135117807"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5087064613","display_name":"Gabriela Lobinska","orcid":"https://orcid.org/0000-0001-7215-4111"},"institutions":[{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Gabriela Lobinska","raw_affiliation_strings":["Department of Genetics Evolution and Environment, University College London, London, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genetics Evolution and Environment, University College London, London, UK","institution_ids":["https://openalex.org/I45129253"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5050068380"],"corresponding_institution_ids":["https://openalex.org/I12708293","https://openalex.org/I4210144746","https://openalex.org/I45129253","https://openalex.org/I97565354"],"apc_list":{"value":2690,"currency":"USD","value_usd":2690},"apc_paid":{"value":1241,"currency":"EUR","value_usd":1338},"fwci":1.491,"has_fulltext":true,"cited_by_count":35,"citation_normalized_percentile":{"value":0.82585597,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"21","issue":"S10","first_page":"779","last_page":"779"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.8547000288963318,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.8547000288963318,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.11389999836683273,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11354","display_name":"Evolution and Paleontology Studies","score":0.006399999838322401,"subfield":{"id":"https://openalex.org/subfields/1911","display_name":"Paleontology"},"field":{"id":"https://openalex.org/fields/19","display_name":"Earth and Planetary Sciences"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metric","display_name":"Metric (unit)","score":0.6787157654762268},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.665342390537262},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.5694760084152222},{"id":"https://openalex.org/keywords/branching","display_name":"Branching (polymer chemistry)","score":0.5294729471206665},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5055925846099854},{"id":"https://openalex.org/keywords/enhanced-data-rates-for-gsm-evolution","display_name":"Enhanced Data Rates for GSM Evolution","score":0.5004091262817383},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.4933101236820221},{"id":"https://openalex.org/keywords/event","display_name":"Event (particle physics)","score":0.4662114083766937},{"id":"https://openalex.org/keywords/binary-number","display_name":"Binary number","score":0.4634169936180115},{"id":"https://openalex.org/keywords/binary-tree","display_name":"Binary tree","score":0.45582517981529236},{"id":"https://openalex.org/keywords/measure","display_name":"Measure (data warehouse)","score":0.44899600744247437},{"id":"https://openalex.org/keywords/node","display_name":"Node (physics)","score":0.4423716068267822},{"id":"https://openalex.org/keywords/variety","display_name":"Variety (cybernetics)","score":0.44204649329185486},{"id":"https://openalex.org/keywords/path","display_name":"Path (computing)","score":0.4262091815471649},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.37503722310066223},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.36522141098976135},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.29067283868789673},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.25011491775512695},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.24049943685531616},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.20447108149528503},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.11796450614929199},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.09617432951927185},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.09521487355232239},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.09279793500900269}],"concepts":[{"id":"https://openalex.org/C176217482","wikidata":"https://www.wikidata.org/wiki/Q860554","display_name":"Metric (unit)","level":2,"score":0.6787157654762268},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.665342390537262},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.5694760084152222},{"id":"https://openalex.org/C206175624","wikidata":"https://www.wikidata.org/wiki/Q595731","display_name":"Branching (polymer chemistry)","level":2,"score":0.5294729471206665},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5055925846099854},{"id":"https://openalex.org/C162307627","wikidata":"https://www.wikidata.org/wiki/Q204833","display_name":"Enhanced Data Rates for GSM Evolution","level":2,"score":0.5004091262817383},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.4933101236820221},{"id":"https://openalex.org/C2779662365","wikidata":"https://www.wikidata.org/wiki/Q5416694","display_name":"Event (particle physics)","level":2,"score":0.4662114083766937},{"id":"https://openalex.org/C48372109","wikidata":"https://www.wikidata.org/wiki/Q3913","display_name":"Binary number","level":2,"score":0.4634169936180115},{"id":"https://openalex.org/C197855036","wikidata":"https://www.wikidata.org/wiki/Q380172","display_name":"Binary tree","level":2,"score":0.45582517981529236},{"id":"https://openalex.org/C2780009758","wikidata":"https://www.wikidata.org/wiki/Q6804172","display_name":"Measure (data warehouse)","level":2,"score":0.44899600744247437},{"id":"https://openalex.org/C62611344","wikidata":"https://www.wikidata.org/wiki/Q1062658","display_name":"Node (physics)","level":2,"score":0.4423716068267822},{"id":"https://openalex.org/C136197465","wikidata":"https://www.wikidata.org/wiki/Q1729295","display_name":"Variety (cybernetics)","level":2,"score":0.44204649329185486},{"id":"https://openalex.org/C2777735758","wikidata":"https://www.wikidata.org/wiki/Q817765","display_name":"Path (computing)","level":2,"score":0.4262091815471649},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.37503722310066223},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.36522141098976135},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.29067283868789673},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.25011491775512695},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.24049943685531616},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.20447108149528503},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.11796450614929199},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.09617432951927185},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.09521487355232239},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.09279793500900269},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C94375191","wikidata":"https://www.wikidata.org/wiki/Q11205","display_name":"Arithmetic","level":1,"score":0.0},{"id":"https://openalex.org/C159985019","wikidata":"https://www.wikidata.org/wiki/Q181790","display_name":"Composite material","level":1,"score":0.0},{"id":"https://openalex.org/C21547014","wikidata":"https://www.wikidata.org/wiki/Q1423657","display_name":"Operations management","level":1,"score":0.0},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1186/s12864-020-07011-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12864-020-07011-0","pdf_url":"https://bmcgenomics.biomedcentral.com/track/pdf/10.1186/s12864-020-07011-0","source":{"id":"https://openalex.org/S28614077","display_name":"BMC Genomics","issn_l":"1471-2164","issn":["1471-2164"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Genomics","raw_type":"journal-article"},{"id":"pmid:33208096","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33208096","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC genomics","raw_type":null},{"id":"pmh:oai:serval.unil.ch:BIB_2A5CE76C7989","is_oa":true,"landing_page_url":"https://serval.unil.ch/notice/serval:BIB_2A5CE76C7989","pdf_url":null,"source":{"id":"https://openalex.org/S4306401797","display_name":"SERVAL (Universit\u00e9 de Lausanne)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210093590","host_organization_name":"Swiss School of Archaeology in Greece","host_organization_lineage":["https://openalex.org/I4210093590"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC genomics, vol. 21, no. Suppl 10, pp. 779","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:iris.unil.ch:iris/116403","is_oa":true,"landing_page_url":"https://iris.unil.ch/handle/iris/116403","pdf_url":"https://iris.unil.ch/bitstreams/df7ba5e5-148e-46e8-a0ae-d41ae3571c7d/download","source":{"id":"https://openalex.org/S7407055444","display_name":"IRIS","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"journal article"},{"id":"pmh:oai:doaj.org/article:278b83ac33f44ae89c61e21912e0402a","is_oa":true,"landing_page_url":"https://doaj.org/article/278b83ac33f44ae89c61e21912e0402a","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Genomics, Vol 21, Iss S10, Pp 1-13 (2020)","raw_type":"article"},{"id":"pmh:oai:eprints.ucl.ac.uk.OAI2:10115921","is_oa":false,"landing_page_url":"https://discovery.ucl.ac.uk/id/eprint/10115921/","pdf_url":null,"source":{"id":"https://openalex.org/S4306400024","display_name":"UCL Discovery (University College London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I45129253","host_organization_name":"University College London","host_organization_lineage":["https://openalex.org/I45129253"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Genomics , 21 (Suppl 10) , Article 779. (2020)","raw_type":"Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:7677779","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7677779","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Genomics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12864-020-07011-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12864-020-07011-0","pdf_url":"https://bmcgenomics.biomedcentral.com/track/pdf/10.1186/s12864-020-07011-0","source":{"id":"https://openalex.org/S28614077","display_name":"BMC Genomics","issn_l":"1471-2164","issn":["1471-2164"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Genomics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G7768748897","display_name":"Embracing Phylogenetic Incongruence Among Genetic Loci","funder_award_id":"183723","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320320924","display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung","ror":"https://ror.org/00yjd3n13"},{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"},{"id":"https://openalex.org/F4320334841","display_name":"Fonds de recherche du Qu\u00e9bec \u2013 Nature et technologies","ror":"https://ror.org/00b9f9778"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3104455460.pdf","grobid_xml":"https://content.openalex.org/works/W3104455460.grobid-xml"},"referenced_works_count":34,"referenced_works":["https://openalex.org/W27233561","https://openalex.org/W1495632090","https://openalex.org/W1505285140","https://openalex.org/W1531547509","https://openalex.org/W1575387405","https://openalex.org/W1977694535","https://openalex.org/W1996437477","https://openalex.org/W1997093937","https://openalex.org/W1998459277","https://openalex.org/W1999727705","https://openalex.org/W2007358765","https://openalex.org/W2044789562","https://openalex.org/W2054374076","https://openalex.org/W2056708848","https://openalex.org/W2057294899","https://openalex.org/W2058366551","https://openalex.org/W2060425093","https://openalex.org/W2108531996","https://openalex.org/W2121654623","https://openalex.org/W2132023322","https://openalex.org/W2149049580","https://openalex.org/W2167539386","https://openalex.org/W2169242201","https://openalex.org/W2316262244","https://openalex.org/W2757288623","https://openalex.org/W2763425794","https://openalex.org/W2824959379","https://openalex.org/W2962842745","https://openalex.org/W2962920712","https://openalex.org/W4213351902","https://openalex.org/W4247715064","https://openalex.org/W4254848882","https://openalex.org/W4379662611","https://openalex.org/W4388212639"],"related_works":["https://openalex.org/W2462424100","https://openalex.org/W2014836299","https://openalex.org/W2034871982","https://openalex.org/W2148974013","https://openalex.org/W2130873474","https://openalex.org/W4312203868","https://openalex.org/W2034850439","https://openalex.org/W1974919125","https://openalex.org/W2022364537","https://openalex.org/W2141653867"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1],"Robinson-Foulds":[2],"(RF)":[3],"distance":[4,90],"is":[5,50,131],"a":[6,13,24,39,74,95,127,146],"well-established":[7],"measure":[8],"between":[9,120,141],"phylogenetic":[10,34],"trees.":[11,123],"Despite":[12],"lack":[14],"of":[15,22,42,53,86,94,148],"biological":[16],"justification,":[17],"it":[18],"has":[19],"the":[20,43,47,51,54,92,105,121],"advantages":[21],"being":[23,28],"proper":[25],"metric":[26,49],"and":[27,81,152],"computable":[29],"in":[30,91],"linear":[31],"time.":[32],"For":[33],"applications":[35],"involving":[36],"genes,":[37],"however,":[38],"crucial":[40],"aspect":[41],"trees":[44,67,143],"ignored":[45],"by":[46,72],"RF":[48,65,89],"type":[52],"branching":[55],"event":[56],"(e.g.":[57],"speciation,":[58],"duplication,":[59],"transfer,":[60],"etc).":[61],"RESULTS:":[62],"We":[63,83,125],"extend":[64],"to":[66,104,133],"with":[68],"labeled":[69,142],"internal":[70],"nodes":[71],"including":[73],"node":[75],"flip":[76],"operation,":[77],"alongside":[78],"edge":[79],"contractions":[80],"extensions.":[82],"explore":[84],"properties":[85],"this":[87],"extended":[88],"case":[93],"binary":[96],"labeling.":[97],"In":[98],"particular,":[99],"we":[100],"show":[101],"that":[102],"contrary":[103],"unlabeled":[106],"case,":[107],"an":[108],"optimal":[109],"edit":[110],"path":[111],"may":[112],"require":[113],"contracting":[114],"\"good\"":[115],"edges,":[116],"i.e.":[117],"edges":[118],"shared":[119],"two":[122],"CONCLUSIONS:":[124],"provide":[126],"2-approximation":[128],"algorithm":[129],"which":[130],"shown":[132],"perform":[134],"well":[135],"empirically.":[136],"Looking":[137],"ahead,":[138],"computing":[139],"distances":[140],"opens":[144],"up":[145],"variety":[147],"new":[149],"algorithmic":[150],"directions.Implementation":[151],"simulations":[153],"available":[154],"at":[155],"https://github.com/DessimozLab/pylabeledrf":[156],".":[157]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":9},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":3}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
