{"id":"https://openalex.org/W4415449203","doi":"https://doi.org/10.1186/s12859-026-06431-1","title":"Biochef: a client-side WebAssembly-based workflow builder for genomic data analysis","display_name":"Biochef: a client-side WebAssembly-based workflow builder for genomic data analysis","publication_year":2026,"publication_date":"2026-04-09","ids":{"openalex":"https://openalex.org/W4415449203","doi":"https://doi.org/10.1186/s12859-026-06431-1","pmid":"https://pubmed.ncbi.nlm.nih.gov/41957706"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-026-06431-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-026-06431-1","pdf_url":null,"source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1186/s12859-026-06431-1","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5022269861","display_name":"J\u00falia Salvan da Rosa","orcid":"https://orcid.org/0000-0001-9921-9683"},"institutions":[{"id":"https://openalex.org/I60858718","display_name":"University of Aveiro","ror":"https://ror.org/00nt41z93","country_code":"PT","type":"education","lineage":["https://openalex.org/I60858718"]}],"countries":["PT"],"is_corresponding":true,"raw_author_name":"Joaquim Rosa","raw_affiliation_strings":["IEETA/DETI, LASI, University of Aveiro, Campus Universit\u00e1rio de Santiago, Aveiro, 3810-193, Portugal. joaquimvr15@ua.pt","University of Aveiro"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IEETA/DETI, LASI, University of Aveiro, Campus Universit\u00e1rio de Santiago, Aveiro, 3810-193, Portugal. joaquimvr15@ua.pt","institution_ids":["https://openalex.org/I60858718"]},{"raw_affiliation_string":"University of Aveiro","institution_ids":["https://openalex.org/I60858718"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Jo\u00e3o Andrade","orcid":null},"institutions":[{"id":"https://openalex.org/I60858718","display_name":"University of Aveiro","ror":"https://ror.org/00nt41z93","country_code":"PT","type":"education","lineage":["https://openalex.org/I60858718"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Jo\u00e3o Andrade","raw_affiliation_strings":["IEETA/DETI, LASI, University of Aveiro, Campus Universit\u00e1rio de Santiago, Aveiro, 3810-193, Portugal. joao.andrade06@ua.pt","University of Aveiro"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IEETA/DETI, LASI, University of Aveiro, Campus Universit\u00e1rio de Santiago, Aveiro, 3810-193, Portugal. joao.andrade06@ua.pt","institution_ids":["https://openalex.org/I60858718"]},{"raw_affiliation_string":"University of Aveiro","institution_ids":["https://openalex.org/I60858718"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Jorge Miguel Silva","orcid":"https://orcid.org/0000-0002-6331-6091"},"institutions":[{"id":"https://openalex.org/I60858718","display_name":"University of Aveiro","ror":"https://ror.org/00nt41z93","country_code":"PT","type":"education","lineage":["https://openalex.org/I60858718"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Jorge Miguel Silva","raw_affiliation_strings":["IEETA/DETI, LASI, University of Aveiro, Campus Universit\u00e1rio de Santiago, Aveiro, 3810-193, Portugal. jorge.miguel.ferreira.silva@ua.pt","University of Aveiro"],"raw_orcid":"https://orcid.org/0000-0002-6331-6091","affiliations":[{"raw_affiliation_string":"IEETA/DETI, LASI, University of Aveiro, Campus Universit\u00e1rio de Santiago, Aveiro, 3810-193, Portugal. jorge.miguel.ferreira.silva@ua.pt","institution_ids":["https://openalex.org/I60858718"]},{"raw_affiliation_string":"University of Aveiro","institution_ids":["https://openalex.org/I60858718"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5040524956","display_name":"Jos\u00e9 Lu\u00eds Oliveira","orcid":"https://orcid.org/0000-0002-6672-6176"},"institutions":[{"id":"https://openalex.org/I60858718","display_name":"University of Aveiro","ror":"https://ror.org/00nt41z93","country_code":"PT","type":"education","lineage":["https://openalex.org/I60858718"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Jos\u00e9 Luis Oliveira","raw_affiliation_strings":["IEETA/DETI, LASI, University of Aveiro, Campus Universit\u00e1rio de Santiago, Aveiro, 3810-193, Portugal"],"raw_orcid":"https://orcid.org/0000-0002-6672-6176","affiliations":[{"raw_affiliation_string":"IEETA/DETI, LASI, University of Aveiro, Campus Universit\u00e1rio de Santiago, Aveiro, 3810-193, Portugal","institution_ids":["https://openalex.org/I60858718"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5022269861"],"corresponding_institution_ids":["https://openalex.org/I60858718"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2790},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2790},"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.00306845,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"27","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9843999743461609,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9843999743461609,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.828499972820282},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.5843999981880188},{"id":"https://openalex.org/keywords/scripting-language","display_name":"Scripting language","score":0.46380001306533813},{"id":"https://openalex.org/keywords/usability","display_name":"Usability","score":0.44920000433921814},{"id":"https://openalex.org/keywords/overhead","display_name":"Overhead (engineering)","score":0.4456000030040741},{"id":"https://openalex.org/keywords/software-portability","display_name":"Software portability","score":0.4406999945640564},{"id":"https://openalex.org/keywords/ensembl","display_name":"Ensembl","score":0.3621000051498413},{"id":"https://openalex.org/keywords/interactivity","display_name":"Interactivity","score":0.36010000109672546},{"id":"https://openalex.org/keywords/debugging","display_name":"Debugging","score":0.3504999876022339}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.828499972820282},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8015999794006348},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.5843999981880188},{"id":"https://openalex.org/C61423126","wikidata":"https://www.wikidata.org/wiki/Q187432","display_name":"Scripting language","level":2,"score":0.46380001306533813},{"id":"https://openalex.org/C170130773","wikidata":"https://www.wikidata.org/wiki/Q216378","display_name":"Usability","level":2,"score":0.44920000433921814},{"id":"https://openalex.org/C2779960059","wikidata":"https://www.wikidata.org/wiki/Q7113681","display_name":"Overhead (engineering)","level":2,"score":0.4456000030040741},{"id":"https://openalex.org/C63000827","wikidata":"https://www.wikidata.org/wiki/Q3080428","display_name":"Software portability","level":2,"score":0.4406999945640564},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.36250001192092896},{"id":"https://openalex.org/C141674004","wikidata":"https://www.wikidata.org/wiki/Q1344256","display_name":"Ensembl","level":5,"score":0.3621000051498413},{"id":"https://openalex.org/C144430266","wikidata":"https://www.wikidata.org/wiki/Q839721","display_name":"Interactivity","level":2,"score":0.36010000109672546},{"id":"https://openalex.org/C168065819","wikidata":"https://www.wikidata.org/wiki/Q845566","display_name":"Debugging","level":2,"score":0.3504999876022339},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.34200000762939453},{"id":"https://openalex.org/C114466953","wikidata":"https://www.wikidata.org/wiki/Q6034165","display_name":"Initialization","level":2,"score":0.33500000834465027},{"id":"https://openalex.org/C89505385","wikidata":"https://www.wikidata.org/wiki/Q47146","display_name":"User interface","level":2,"score":0.32580000162124634},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3190999925136566},{"id":"https://openalex.org/C2780378061","wikidata":"https://www.wikidata.org/wiki/Q25351891","display_name":"Service (business)","level":2,"score":0.3163999915122986},{"id":"https://openalex.org/C2781148417","wikidata":"https://www.wikidata.org/wiki/Q5533486","display_name":"Genome browser","level":5,"score":0.3118000030517578},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.3059000074863434},{"id":"https://openalex.org/C35578498","wikidata":"https://www.wikidata.org/wiki/Q193424","display_name":"Web service","level":2,"score":0.29420000314712524},{"id":"https://openalex.org/C26324664","wikidata":"https://www.wikidata.org/wiki/Q1065525","display_name":"Message queue","level":2,"score":0.2879999876022339},{"id":"https://openalex.org/C2776397876","wikidata":"https://www.wikidata.org/wiki/Q1450531","display_name":"Cyberinfrastructure","level":2,"score":0.27869999408721924},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.2768000066280365},{"id":"https://openalex.org/C86251818","wikidata":"https://www.wikidata.org/wiki/Q816754","display_name":"Benchmarking","level":2,"score":0.27639999985694885},{"id":"https://openalex.org/C37789001","wikidata":"https://www.wikidata.org/wiki/Q782543","display_name":"Graphical user interface","level":2,"score":0.2736999988555908},{"id":"https://openalex.org/C149635348","wikidata":"https://www.wikidata.org/wiki/Q193040","display_name":"Embedded system","level":1,"score":0.2630999982357025},{"id":"https://openalex.org/C140824633","wikidata":"https://www.wikidata.org/wiki/Q2808660","display_name":"Workflow management system","level":3,"score":0.26260000467300415},{"id":"https://openalex.org/C48105269","wikidata":"https://www.wikidata.org/wiki/Q1141160","display_name":"Header","level":2,"score":0.26030001044273376},{"id":"https://openalex.org/C515153823","wikidata":"https://www.wikidata.org/wiki/Q14116","display_name":"OS X","level":3,"score":0.25780001282691956},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.2547999918460846}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":7,"locations":[{"id":"doi:10.1186/s12859-026-06431-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-026-06431-1","pdf_url":null,"source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"doi:10.21203/rs.3.rs-7697498/v1","is_oa":true,"landing_page_url":"https://doi.org/10.21203/rs.3.rs-7697498/v1","pdf_url":"https://www.researchsquare.com/article/rs-7697498/latest.pdf","source":{"id":"https://openalex.org/S4306525896","display_name":"Research Square","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"Research Square","raw_type":"posted-content"},{"id":"pmid:41957706","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41957706","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:034d707c6eee4d039e61cdf9ec993285","is_oa":true,"landing_page_url":"https://doaj.org/article/034d707c6eee4d039e61cdf9ec993285","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 27, Iss 1 (2026)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:13173965","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC13173965/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"doi:10.6084/m9.figshare.c.8475930","is_oa":true,"landing_page_url":"https://doi.org/10.6084/m9.figshare.c.8475930","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Collection"},{"id":"doi:10.6084/m9.figshare.c.8475930.v1","is_oa":true,"landing_page_url":"https://doi.org/10.6084/m9.figshare.c.8475930.v1","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Collection"}],"best_oa_location":{"id":"doi:10.1186/s12859-026-06431-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-026-06431-1","pdf_url":null,"source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5293182464","display_name":null,"funder_award_id":"101081813","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G6177214119","display_name":null,"funder_award_id":"00127-IEETA","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320334779","display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia","ror":"https://ror.org/00snfqn58"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"<title>Abstract</title>":[0],"Background:":[1],"Genomics":[2],"analyses":[3],"often":[4],"rely":[5],"on":[6,161],"command-line":[7],"tools":[8],"executed":[9],"via":[10,58],"remote":[11],"servers,":[12],"imposing":[13],"usability":[14],"barriers":[15],"for":[16],"non-technical":[17],"users":[18],"and":[19,34,72,77,111,146,173,204],"raising":[20],"privacy":[21],"concerns.":[22],"WebAssembly":[23,160,202],"(WASM)":[24],"enables":[25],"native-code":[26],"execution":[27,123],"directly":[28],"in":[29,151],"web":[30,137],"browsers,":[31],"eliminating":[32],"installations":[33],"data":[35,168],"transfers.":[36],"Results:":[37],"We":[38],"introduce":[39],"BioChef,":[40],"a":[41,51,152],"client-side":[42],"genomic":[43,167,190],"workflow":[44,191],"platform":[45],"that":[46],"uses":[47],"WASM.":[48,195],"BioChef":[49,131,157],"compiles":[50],"genomics":[52],"toolkit":[53],"into":[54],"browser-executable":[55],"modules":[56],"accessible":[57],"an":[59],"intuitive":[60],"drag-and-drop":[61],"GUI.":[62],"The":[63],"system":[64],"provides":[65],"real-time":[66],"validation,":[67],"flexible":[68],"input":[69],"methods":[70],"(form-based":[71],"JSON),":[73],"intermediate":[74],"step":[75],"inspections,":[76],"reproducible":[78],"workflows":[79,132],"exportable":[80],"as":[81,140],"bash":[82],"scripts":[83],"or":[84],"configuration":[85],"files.":[86],"Performance":[87],"benchmarks":[88],"across":[89],"major":[90],"browsers":[91],"(Chromium,":[92],"Gecko,":[93],"WebKit)":[94],"demonstrate":[95],"rapid":[96],"initialization":[97],"(LCP":[98],"0.583":[99],"s),":[100],"responsive":[101],"interactivity":[102],"(INP":[103],"30.5":[104],"ms),":[105],"minimal":[106],"layout":[107],"shifts":[108],"(CLS":[109],"0.01),":[110],"acceptable":[112],"overhead":[113],"(average":[114],"181.5":[115],"ms":[116],"initial":[117],"WASM":[118],"module":[119],"load).":[120],"Although":[121],"browser":[122],"introduced":[124],"performance":[125],"penalties":[126],"(~130x":[127],"slower":[128],"than":[129],"native),":[130],"still":[133],"significantly":[134],"outperformed":[135],"traditional":[136],"services":[138],"such":[139],"Galaxy":[141],"by":[142,194],"avoiding":[143],"network":[144],"delays":[145],"server-side":[147],"queueing":[148],"(11.3x":[149],"faster":[150],"standard":[153],"pipeline":[154],"benchmark).":[155],"Conclusions:":[156],"shows":[158],"how":[159],"the":[162,185],"client":[163],"side":[164],"can":[165],"democratize":[166],"processing,":[169],"ensuring":[170],"privacy,":[171],"reproducibility":[172,205],"ease":[174],"of":[175],"use":[176],"without":[177],"external":[178],"dependencies.":[179],"To":[180],"our":[181],"knowledge,":[182],"this":[183],"is":[184],"first":[186],"fully":[187],"client-side,":[188],"graphical":[189],"environment":[192],"powered":[193],"Availability:":[196],"Online":[197],"demo:":[198],"https://ieeta-pt.github.io/Biochef.":[199],"Source":[200],"code,":[201],"binaries,":[203],"artifacts:":[206],"https://github.com/ieeta-pt/Biochef.":[207]},"counts_by_year":[],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-24T00:00:00"}
