{"id":"https://openalex.org/W7129516098","doi":"https://doi.org/10.1186/s12859-026-06366-7","title":"Cascade PSI-BLAST 2.0: a fast-searching parallelized remote homology detection tool and development of Cascade web server 2.0","display_name":"Cascade PSI-BLAST 2.0: a fast-searching parallelized remote homology detection tool and development of Cascade web server 2.0","publication_year":2026,"publication_date":"2026-02-18","ids":{"openalex":"https://openalex.org/W7129516098","doi":"https://doi.org/10.1186/s12859-026-06366-7","pmid":"https://pubmed.ncbi.nlm.nih.gov/41703447"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-026-06366-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-026-06366-7","pdf_url":null,"source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1186/s12859-026-06366-7","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5108114713","display_name":"Soumya Nayak","orcid":null},"institutions":[{"id":"https://openalex.org/I11947397","display_name":"Tata Institute of Fundamental Research","ror":"https://ror.org/03ht1xw27","country_code":"IN","type":"education","lineage":["https://openalex.org/I11947397","https://openalex.org/I2799351866","https://openalex.org/I3149292468"]},{"id":"https://openalex.org/I194223965","display_name":"National Centre for Biological Sciences","ror":"https://ror.org/03gf8rp76","country_code":"IN","type":"facility","lineage":["https://openalex.org/I11947397","https://openalex.org/I194223965","https://openalex.org/I2799351866","https://openalex.org/I3149292468"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Soumya Nayak","raw_affiliation_strings":["National Centre for Biological Sciences (Tata Institute of Fundamental Research), GKVK Campus, Bangalore, Karnataka, 560065, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Centre for Biological Sciences (Tata Institute of Fundamental Research), GKVK Campus, Bangalore, Karnataka, 560065, India","institution_ids":["https://openalex.org/I11947397","https://openalex.org/I194223965"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5094079046","display_name":"Dheemanth Reddy Regati","orcid":"https://orcid.org/0009-0002-3393-5665"},"institutions":[{"id":"https://openalex.org/I11947397","display_name":"Tata Institute of Fundamental Research","ror":"https://ror.org/03ht1xw27","country_code":"IN","type":"education","lineage":["https://openalex.org/I11947397","https://openalex.org/I2799351866","https://openalex.org/I3149292468"]},{"id":"https://openalex.org/I194223965","display_name":"National Centre for Biological Sciences","ror":"https://ror.org/03gf8rp76","country_code":"IN","type":"facility","lineage":["https://openalex.org/I11947397","https://openalex.org/I194223965","https://openalex.org/I2799351866","https://openalex.org/I3149292468"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Dheemanth Reddy Regati","raw_affiliation_strings":["National Centre for Biological Sciences (Tata Institute of Fundamental Research), GKVK Campus, Bangalore, Karnataka, 560065, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Centre for Biological Sciences (Tata Institute of Fundamental Research), GKVK Campus, Bangalore, Karnataka, 560065, India","institution_ids":["https://openalex.org/I11947397","https://openalex.org/I194223965"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5123544388","display_name":"Murugavel Pavalam","orcid":null},"institutions":[{"id":"https://openalex.org/I11947397","display_name":"Tata Institute of Fundamental Research","ror":"https://ror.org/03ht1xw27","country_code":"IN","type":"education","lineage":["https://openalex.org/I11947397","https://openalex.org/I2799351866","https://openalex.org/I3149292468"]},{"id":"https://openalex.org/I194223965","display_name":"National Centre for Biological Sciences","ror":"https://ror.org/03gf8rp76","country_code":"IN","type":"facility","lineage":["https://openalex.org/I11947397","https://openalex.org/I194223965","https://openalex.org/I2799351866","https://openalex.org/I3149292468"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Murugavel Pavalam","raw_affiliation_strings":["National Centre for Biological Sciences (Tata Institute of Fundamental Research), GKVK Campus, Bangalore, Karnataka, 560065, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Centre for Biological Sciences (Tata Institute of Fundamental Research), GKVK Campus, Bangalore, Karnataka, 560065, India","institution_ids":["https://openalex.org/I11947397","https://openalex.org/I194223965"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5126267882","display_name":"R. Sowdhamini","orcid":null},"institutions":[{"id":"https://openalex.org/I194223965","display_name":"National Centre for Biological Sciences","ror":"https://ror.org/03gf8rp76","country_code":"IN","type":"facility","lineage":["https://openalex.org/I11947397","https://openalex.org/I194223965","https://openalex.org/I2799351866","https://openalex.org/I3149292468"]},{"id":"https://openalex.org/I4210153885","display_name":"Institute of Bioinformatics and Applied Biotechnology","ror":"https://ror.org/04qcpkd70","country_code":"IN","type":"facility","lineage":["https://openalex.org/I4210153885"]},{"id":"https://openalex.org/I59270414","display_name":"Indian Institute of Science Bangalore","ror":"https://ror.org/04dese585","country_code":"IN","type":"education","lineage":["https://openalex.org/I59270414"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"R. Sowdhamini","raw_affiliation_strings":["Institute of Bioinformatics and Applied Biotechnology, Bangalore, India. mini@ncbs.res.in","Molecular Biophysics Unit, Indian Institute of Science, Bangalore, 560012, India. mini@ncbs.res.in","National Centre for Biological Sciences (Tata Institute of Fundamental Research), GKVK Campus, Bangalore, Karnataka, 560065, India. mini@ncbs.res.in"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Bioinformatics and Applied Biotechnology, Bangalore, India. mini@ncbs.res.in","institution_ids":["https://openalex.org/I4210153885"]},{"raw_affiliation_string":"Molecular Biophysics Unit, Indian Institute of Science, Bangalore, 560012, India. mini@ncbs.res.in","institution_ids":["https://openalex.org/I59270414"]},{"raw_affiliation_string":"National Centre for Biological Sciences (Tata Institute of Fundamental Research), GKVK Campus, Bangalore, Karnataka, 560065, India. mini@ncbs.res.in","institution_ids":["https://openalex.org/I194223965"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5126267882"],"corresponding_institution_ids":["https://openalex.org/I194223965","https://openalex.org/I4210153885","https://openalex.org/I59270414"],"apc_list":{"value":2990,"currency":"USD","value_usd":2990},"apc_paid":{"value":2990,"currency":"USD","value_usd":2990},"fwci":3.209,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.87534436,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":97},"biblio":{"volume":"27","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.31700000166893005,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.31700000166893005,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.2948000133037567,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.1785999983549118,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/uniprot","display_name":"UniProt","score":0.7705000042915344},{"id":"https://openalex.org/keywords/cascade","display_name":"Cascade","score":0.6783999800682068},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.517300009727478},{"id":"https://openalex.org/keywords/web-service","display_name":"Web service","score":0.41040000319480896},{"id":"https://openalex.org/keywords/web-application","display_name":"Web application","score":0.38190001249313354},{"id":"https://openalex.org/keywords/throughput","display_name":"Throughput","score":0.3621000051498413}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8012999892234802},{"id":"https://openalex.org/C202264299","wikidata":"https://www.wikidata.org/wiki/Q905695","display_name":"UniProt","level":3,"score":0.7705000042915344},{"id":"https://openalex.org/C34146451","wikidata":"https://www.wikidata.org/wiki/Q5048094","display_name":"Cascade","level":2,"score":0.6783999800682068},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.517300009727478},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.41760000586509705},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.41609999537467957},{"id":"https://openalex.org/C35578498","wikidata":"https://www.wikidata.org/wiki/Q193424","display_name":"Web service","level":2,"score":0.41040000319480896},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.38190001249313354},{"id":"https://openalex.org/C157764524","wikidata":"https://www.wikidata.org/wiki/Q1383412","display_name":"Throughput","level":3,"score":0.3621000051498413},{"id":"https://openalex.org/C93996380","wikidata":"https://www.wikidata.org/wiki/Q44127","display_name":"Server","level":2,"score":0.34290000796318054},{"id":"https://openalex.org/C72802188","wikidata":"https://www.wikidata.org/wiki/Q1683352","display_name":"Smith\u2013Waterman algorithm","level":5,"score":0.33180001378059387},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.28600001335144043},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.2703000009059906},{"id":"https://openalex.org/C2779315201","wikidata":"https://www.wikidata.org/wiki/Q414601","display_name":"Sequence homology","level":4,"score":0.2662000060081482},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.26499998569488525},{"id":"https://openalex.org/C152752567","wikidata":"https://www.wikidata.org/wiki/Q116877","display_name":"Code refactoring","level":3,"score":0.25380000472068787}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-026-06366-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-026-06366-7","pdf_url":null,"source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:41703447","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41703447","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:13020176","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC13020176/","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC13020176/pdf/12859_2026_Article_6366.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:d9058d88362842dcbfe568ac4d65e9a3","is_oa":true,"landing_page_url":"https://doaj.org/article/d9058d88362842dcbfe568ac4d65e9a3","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 27, Iss 1 (2026)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s12859-026-06366-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-026-06366-7","pdf_url":null,"source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","score":0.6286481618881226,"display_name":"Industry, innovation and infrastructure"}],"awards":[{"id":"https://openalex.org/G1878831829","display_name":null,"funder_award_id":"BT/PR40187/BTIS/137/9/2021","funder_id":"https://openalex.org/F4320320717","funder_display_name":"Department of Biotechnology, Ministry of Science and Technology, India"},{"id":"https://openalex.org/G4047155736","display_name":null,"funder_award_id":"JBR/2021/000006","funder_id":"https://openalex.org/F4320334771","funder_display_name":"Science and Engineering Research Board"},{"id":"https://openalex.org/G8098714601","display_name":null,"funder_award_id":"IBAB/MSCB/182/2022","funder_id":"https://openalex.org/F3239332064","funder_display_name":"Institute of Bioinformatics and Applied Biotechnology"}],"funders":[{"id":"https://openalex.org/F3239332064","display_name":"Institute of Bioinformatics and Applied Biotechnology","ror":"https://ror.org/04qcpkd70"},{"id":"https://openalex.org/F4320320715","display_name":"Tata Institute of Fundamental Research","ror":"https://ror.org/03ht1xw27"},{"id":"https://openalex.org/F4320320717","display_name":"Department of Biotechnology, Ministry of Science and Technology, India","ror":"https://ror.org/03tjsyq23"},{"id":"https://openalex.org/F4320334771","display_name":"Science and Engineering Research Board","ror":"https://ror.org/03ffdsr55"},{"id":"https://openalex.org/F4320335065","display_name":"National Centre for Biological Sciences","ror":"https://ror.org/03gf8rp76"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":13,"referenced_works":["https://openalex.org/W1980296898","https://openalex.org/W1995260859","https://openalex.org/W1998687409","https://openalex.org/W2076048958","https://openalex.org/W2133312664","https://openalex.org/W2148853951","https://openalex.org/W2151831732","https://openalex.org/W2154268145","https://openalex.org/W2158714788","https://openalex.org/W2170747616","https://openalex.org/W2620998958","https://openalex.org/W2739999456","https://openalex.org/W4320800236"],"related_works":[],"abstract_inverted_index":{"BACKGROUND:":[0],"Remote":[1],"homology":[2],"detection":[3,99,193],"is":[4,71],"critical":[5],"for":[6,175,252],"inferring":[7],"evolutionary":[8,261],"and":[9,26,69,82,94,120,141,184,200,207,260],"functional":[10,258],"relationships":[11,56],"among":[12],"proteins,":[13],"but":[14],"divergence":[15],"below":[16],"30%":[17],"identity":[18],"often":[19],"hinders":[20],"standard":[21],"sequence-based":[22],"searches.":[23,146],"Profile-based":[24],"methods":[25],"HMMs":[27],"improve":[28],"sensitivity,":[29],"yet":[30],"many":[31],"distant":[32,254],"homologues":[33,196],"remain":[34],"undetected.":[35],"Cascade":[36,106,189],"PSI-BLAST":[37,107,190],"uses":[38],"efficient,":[39],"iterative,":[40],"multi-generation":[41],"searches":[42,163,178,229],"of":[43,194],"intermediate":[44,80,205],"hits":[45],"to":[46,63,109,116,144,220],"bridge":[47],"sequence":[48],"gaps,":[49],"constructing":[50],"successive":[51],"PSSMs":[52],"that":[53],"reveal":[54],"remote":[55,132,195],"without":[57],"structural":[58],"information.":[59],"However,":[60],"its":[61,118],"application":[62],"ultra-large":[64],"databases":[65,202],"such":[66,149,217],"as":[67,150,218],"NR":[68,151,219],"UniProt":[70,142],"computationally":[72],"intensive.":[73],"We":[74,102],"address":[75],"this":[76],"limitation":[77],"by":[78,160,203],"optimizing":[79],"selection":[81],"enabling":[83],"distributed":[84,208],"execution":[85],"across":[86,164,197],"multiple":[87,113,165],"CPUs":[88],"or":[89],"servers,":[90],"significantly":[91],"enhancing":[92],"throughput":[93],"resource":[95],"utilization":[96],"while":[97,233],"preserving":[98],"sensitivity.":[100],"RESULTS:":[101],"applied":[103],"the":[104,124,234],"parallelized":[105],"algorithm":[108],"sequences":[110,206],"drawn":[111],"from":[112],"SCOP":[114],"classes":[115],"evaluate":[117],"sensitivity":[119],"predictive":[121],"power":[122],"on":[123,179,214,230,241],"GenDis":[125,140],"database.":[126],"Our":[127,187],"method":[128],"uncovers":[129],"substantially":[130],"more":[131],"homologues,":[133],"with":[134],"less":[135],"false":[136],"positives,":[137],"in":[138,156],"both":[139,198],"compared":[143],"conventional":[145],"Large":[147],"repositories":[148,216],"can":[152],"also":[153],"be":[154],"processed":[155],"a":[157,171,248],"practical":[158,221],"timeframe":[159],"distributing":[161],"cascade":[162,177],"servers.":[166],"Finally,":[167],"we":[168],"have":[169],"deployed":[170],"user-friendly":[172,228],"web":[173,224],"server":[174,225],"running":[176],"smaller":[180,231],"databases,":[181],"including":[182],"PDB":[183],"Swiss-Prot.":[185],"CONCLUSION:":[186],"enhanced":[188],"markedly":[191],"improves":[192],"large":[199],"curated":[201],"leveraging":[204],"execution.":[209],"Multi-server":[210],"parallelization":[211],"reduces":[212],"runtimes":[213],"expansive":[215],"levels.":[222],"The":[223],"offers":[226],"rapid,":[227],"datasets,":[232],"standalone":[235],"package":[236],"supports":[237],"scalable,":[238],"customizable":[239],"analyses":[240],"local":[242],"infrastructure.":[243],"Together,":[244],"these":[245],"tools":[246],"provide":[247],"versatile,":[249],"sequence-only":[250],"platform":[251],"uncovering":[253],"protein":[255],"relationships,":[256],"accelerating":[257],"annotation":[259],"insights.":[262]},"counts_by_year":[{"year":2026,"cited_by_count":1}],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2026-02-18T00:00:00"}
