{"id":"https://openalex.org/W4417105682","doi":"https://doi.org/10.1186/s12859-025-06341-8","title":"MARTS-DB: a database of mechanisms and reactions of terpene synthases","display_name":"MARTS-DB: a database of mechanisms and reactions of terpene synthases","publication_year":2025,"publication_date":"2025-12-08","ids":{"openalex":"https://openalex.org/W4417105682","doi":"https://doi.org/10.1186/s12859-025-06341-8","pmid":"https://pubmed.ncbi.nlm.nih.gov/41361262"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-025-06341-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-025-06341-8","pdf_url":null,"source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1186/s12859-025-06341-8","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5093842395","display_name":"Martin Engst","orcid":null},"institutions":[{"id":"https://openalex.org/I4210145889","display_name":"Czech Academy of Sciences, Institute of Organic Chemistry and Biochemistry","ror":"https://ror.org/04nfjn472","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I202391551","https://openalex.org/I4210145889"]},{"id":"https://openalex.org/I9073902","display_name":"University of Chemistry and Technology, Prague","ror":"https://ror.org/05ggn0a85","country_code":"CZ","type":"education","lineage":["https://openalex.org/I9073902"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Martin Engst","raw_affiliation_strings":["Faculty of Chemical Technology, University of Chemistry and Technology Prague, Technick\u00e1 5, Prague, Czech Republic","Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Flemingovo n\u00e1m\u011bst\u00ed 2, Prague, Czech Republic"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Chemical Technology, University of Chemistry and Technology Prague, Technick\u00e1 5, Prague, Czech Republic","institution_ids":["https://openalex.org/I9073902"]},{"raw_affiliation_string":"Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Flemingovo n\u00e1m\u011bst\u00ed 2, Prague, Czech Republic","institution_ids":["https://openalex.org/I4210145889"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5117553523","display_name":"Martin Broke\u0161","orcid":null},"institutions":[{"id":"https://openalex.org/I4210145889","display_name":"Czech Academy of Sciences, Institute of Organic Chemistry and Biochemistry","ror":"https://ror.org/04nfjn472","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I202391551","https://openalex.org/I4210145889"]},{"id":"https://openalex.org/I9073902","display_name":"University of Chemistry and Technology, Prague","ror":"https://ror.org/05ggn0a85","country_code":"CZ","type":"education","lineage":["https://openalex.org/I9073902"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Martin Broke\u0161","raw_affiliation_strings":["Faculty of Chemical Technology, University of Chemistry and Technology Prague, Technick\u00e1 5, Prague, Czech Republic","Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Flemingovo n\u00e1m\u011bst\u00ed 2, Prague, Czech Republic"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Chemical Technology, University of Chemistry and Technology Prague, Technick\u00e1 5, Prague, Czech Republic","institution_ids":["https://openalex.org/I9073902"]},{"raw_affiliation_string":"Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Flemingovo n\u00e1m\u011bst\u00ed 2, Prague, Czech Republic","institution_ids":["https://openalex.org/I4210145889"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030595066","display_name":"Tereza \u010calounov\u00e1","orcid":"https://orcid.org/0000-0001-5683-1696"},"institutions":[{"id":"https://openalex.org/I4210145889","display_name":"Czech Academy of Sciences, Institute of Organic Chemistry and Biochemistry","ror":"https://ror.org/04nfjn472","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I202391551","https://openalex.org/I4210145889"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Tereza \u010calounov\u00e1","raw_affiliation_strings":["Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Flemingovo n\u00e1m\u011bst\u00ed 2, Prague, Czech Republic"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Flemingovo n\u00e1m\u011bst\u00ed 2, Prague, Czech Republic","institution_ids":["https://openalex.org/I4210145889"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071907884","display_name":"Raman Samusevich","orcid":"https://orcid.org/0009-0003-1684-3600"},"institutions":[{"id":"https://openalex.org/I4210145889","display_name":"Czech Academy of Sciences, Institute of Organic Chemistry and Biochemistry","ror":"https://ror.org/04nfjn472","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I202391551","https://openalex.org/I4210145889"]},{"id":"https://openalex.org/I4210152232","display_name":"Institute of Informatics of the Slovak Academy of Sciences","ror":"https://ror.org/04jgqpc26","country_code":"SK","type":"facility","lineage":["https://openalex.org/I207624831","https://openalex.org/I4210152232"]},{"id":"https://openalex.org/I44504214","display_name":"Czech Technical University in Prague","ror":"https://ror.org/03kqpb082","country_code":"CZ","type":"education","lineage":["https://openalex.org/I44504214"]},{"id":"https://openalex.org/I9073902","display_name":"University of Chemistry and Technology, Prague","ror":"https://ror.org/05ggn0a85","country_code":"CZ","type":"education","lineage":["https://openalex.org/I9073902"]}],"countries":["CZ","SK"],"is_corresponding":false,"raw_author_name":"Raman Samusevich","raw_affiliation_strings":["Czech Institute of Informatics, Robotics and Cybernetics (CIIRC), Czech Technical University, Jugosl\u00e1vsk\u00fdch partyz\u00e1n\u016f 1580/3, 160 00, Prague, Czech Republic","Faculty of Chemical Technology, University of Chemistry and Technology Prague, Technick\u00e1 5, Prague, Czech Republic","Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Flemingovo n\u00e1m\u011bst\u00ed 2, Prague, Czech Republic"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Czech Institute of Informatics, Robotics and Cybernetics (CIIRC), Czech Technical University, Jugosl\u00e1vsk\u00fdch partyz\u00e1n\u016f 1580/3, 160 00, Prague, Czech Republic","institution_ids":["https://openalex.org/I4210152232","https://openalex.org/I44504214"]},{"raw_affiliation_string":"Faculty of Chemical Technology, University of Chemistry and Technology Prague, Technick\u00e1 5, Prague, Czech Republic","institution_ids":["https://openalex.org/I9073902"]},{"raw_affiliation_string":"Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Flemingovo n\u00e1m\u011bst\u00ed 2, Prague, Czech Republic","institution_ids":["https://openalex.org/I4210145889"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067584589","display_name":"Roman Bushuiev","orcid":"https://orcid.org/0000-0003-1769-1509"},"institutions":[{"id":"https://openalex.org/I4210145889","display_name":"Czech Academy of Sciences, Institute of Organic Chemistry and Biochemistry","ror":"https://ror.org/04nfjn472","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I202391551","https://openalex.org/I4210145889"]},{"id":"https://openalex.org/I4210152232","display_name":"Institute of Informatics of the Slovak Academy of Sciences","ror":"https://ror.org/04jgqpc26","country_code":"SK","type":"facility","lineage":["https://openalex.org/I207624831","https://openalex.org/I4210152232"]},{"id":"https://openalex.org/I44504214","display_name":"Czech Technical University in Prague","ror":"https://ror.org/03kqpb082","country_code":"CZ","type":"education","lineage":["https://openalex.org/I44504214"]},{"id":"https://openalex.org/I9073902","display_name":"University of Chemistry and Technology, Prague","ror":"https://ror.org/05ggn0a85","country_code":"CZ","type":"education","lineage":["https://openalex.org/I9073902"]}],"countries":["CZ","SK"],"is_corresponding":false,"raw_author_name":"Roman Bushuiev","raw_affiliation_strings":["Czech Institute of Informatics, Robotics and Cybernetics (CIIRC), Czech Technical University, Jugosl\u00e1vsk\u00fdch partyz\u00e1n\u016f 1580/3, 160 00, Prague, Czech Republic","Faculty of Chemical Technology, University of Chemistry and Technology Prague, Technick\u00e1 5, Prague, Czech Republic","Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Flemingovo n\u00e1m\u011bst\u00ed 2, Prague, Czech Republic"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Czech Institute of Informatics, Robotics and Cybernetics (CIIRC), Czech Technical University, Jugosl\u00e1vsk\u00fdch partyz\u00e1n\u016f 1580/3, 160 00, Prague, Czech Republic","institution_ids":["https://openalex.org/I4210152232","https://openalex.org/I44504214"]},{"raw_affiliation_string":"Faculty of Chemical Technology, University of Chemistry and Technology Prague, Technick\u00e1 5, Prague, Czech Republic","institution_ids":["https://openalex.org/I9073902"]},{"raw_affiliation_string":"Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Flemingovo n\u00e1m\u011bst\u00ed 2, Prague, Czech Republic","institution_ids":["https://openalex.org/I4210145889"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5093055707","display_name":"Anton Bushuiev","orcid":"https://orcid.org/0009-0007-4783-6584"},"institutions":[{"id":"https://openalex.org/I4210152232","display_name":"Institute of Informatics of the Slovak Academy of Sciences","ror":"https://ror.org/04jgqpc26","country_code":"SK","type":"facility","lineage":["https://openalex.org/I207624831","https://openalex.org/I4210152232"]},{"id":"https://openalex.org/I44504214","display_name":"Czech Technical University in Prague","ror":"https://ror.org/03kqpb082","country_code":"CZ","type":"education","lineage":["https://openalex.org/I44504214"]}],"countries":["CZ","SK"],"is_corresponding":false,"raw_author_name":"Anton Bushuiev","raw_affiliation_strings":["Czech Institute of Informatics, Robotics and Cybernetics (CIIRC), Czech Technical University, Jugosl\u00e1vsk\u00fdch partyz\u00e1n\u016f 1580/3, 160 00, Prague, Czech Republic"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Czech Institute of Informatics, Robotics and Cybernetics (CIIRC), Czech Technical University, Jugosl\u00e1vsk\u00fdch partyz\u00e1n\u016f 1580/3, 160 00, Prague, Czech Republic","institution_ids":["https://openalex.org/I4210152232","https://openalex.org/I44504214"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073798268","display_name":"Ratthachat Chatpatanasiri","orcid":null},"institutions":[{"id":"https://openalex.org/I4210152232","display_name":"Institute of Informatics of the Slovak Academy of Sciences","ror":"https://ror.org/04jgqpc26","country_code":"SK","type":"facility","lineage":["https://openalex.org/I207624831","https://openalex.org/I4210152232"]},{"id":"https://openalex.org/I44504214","display_name":"Czech Technical University in Prague","ror":"https://ror.org/03kqpb082","country_code":"CZ","type":"education","lineage":["https://openalex.org/I44504214"]}],"countries":["CZ","SK"],"is_corresponding":false,"raw_author_name":"Ratthachat Chatpatanasiri","raw_affiliation_strings":["Czech Institute of Informatics, Robotics and Cybernetics (CIIRC), Czech Technical University, Jugosl\u00e1vsk\u00fdch partyz\u00e1n\u016f 1580/3, 160 00, Prague, Czech Republic"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Czech Institute of Informatics, Robotics and Cybernetics (CIIRC), Czech Technical University, Jugosl\u00e1vsk\u00fdch partyz\u00e1n\u016f 1580/3, 160 00, Prague, Czech Republic","institution_ids":["https://openalex.org/I4210152232","https://openalex.org/I44504214"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5098215964","display_name":"Ad\u00e9la Tajovsk\u00e1","orcid":null},"institutions":[{"id":"https://openalex.org/I4210145889","display_name":"Czech Academy of Sciences, Institute of Organic Chemistry and Biochemistry","ror":"https://ror.org/04nfjn472","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I202391551","https://openalex.org/I4210145889"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Ad\u00e9la Tajovsk\u00e1","raw_affiliation_strings":["Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Flemingovo n\u00e1m\u011bst\u00ed 2, Prague, Czech Republic"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Flemingovo n\u00e1m\u011bst\u00ed 2, Prague, Czech Republic","institution_ids":["https://openalex.org/I4210145889"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5120719401","display_name":"Safa Mert Akme\u015fe","orcid":null},"institutions":[{"id":"https://openalex.org/I4210145889","display_name":"Czech Academy of Sciences, Institute of Organic Chemistry and Biochemistry","ror":"https://ror.org/04nfjn472","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I202391551","https://openalex.org/I4210145889"]},{"id":"https://openalex.org/I9073902","display_name":"University of Chemistry and Technology, Prague","ror":"https://ror.org/05ggn0a85","country_code":"CZ","type":"education","lineage":["https://openalex.org/I9073902"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Safa Mert Akme\u015fe","raw_affiliation_strings":["Faculty of Chemical Technology, University of Chemistry and Technology Prague, Technick\u00e1 5, Prague, Czech Republic","Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Flemingovo n\u00e1m\u011bst\u00ed 2, Prague, Czech Republic"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Chemical Technology, University of Chemistry and Technology Prague, Technick\u00e1 5, Prague, Czech Republic","institution_ids":["https://openalex.org/I9073902"]},{"raw_affiliation_string":"Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Flemingovo n\u00e1m\u011bst\u00ed 2, Prague, Czech Republic","institution_ids":["https://openalex.org/I4210145889"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5098577739","display_name":"Milana Perkovi\u0107","orcid":null},"institutions":[{"id":"https://openalex.org/I4210145889","display_name":"Czech Academy of Sciences, Institute of Organic Chemistry and Biochemistry","ror":"https://ror.org/04nfjn472","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I202391551","https://openalex.org/I4210145889"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Milana Perkovi\u0107","raw_affiliation_strings":["Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Flemingovo n\u00e1m\u011bst\u00ed 2, Prague, Czech Republic"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Flemingovo n\u00e1m\u011bst\u00ed 2, Prague, Czech Republic","institution_ids":["https://openalex.org/I4210145889"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5120719400","display_name":"Matou\u0161 Sold\u00e1t","orcid":null},"institutions":[{"id":"https://openalex.org/I21250087","display_name":"Charles University","ror":"https://ror.org/024d6js02","country_code":"CZ","type":"education","lineage":["https://openalex.org/I21250087"]},{"id":"https://openalex.org/I4210145889","display_name":"Czech Academy of Sciences, Institute of Organic Chemistry and Biochemistry","ror":"https://ror.org/04nfjn472","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I202391551","https://openalex.org/I4210145889"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Matou\u0161 Sold\u00e1t","raw_affiliation_strings":["Faculty of Science, Charles University, 128 00, Prague, Czech Republic","Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Flemingovo n\u00e1m\u011bst\u00ed 2, Prague, Czech Republic"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Science, Charles University, 128 00, Prague, Czech Republic","institution_ids":["https://openalex.org/I21250087"]},{"raw_affiliation_string":"Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Flemingovo n\u00e1m\u011bst\u00ed 2, Prague, Czech Republic","institution_ids":["https://openalex.org/I4210145889"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025398783","display_name":"Josef \u0160ivic","orcid":"https://orcid.org/0000-0002-2554-5301"},"institutions":[{"id":"https://openalex.org/I4210152232","display_name":"Institute of Informatics of the Slovak Academy of Sciences","ror":"https://ror.org/04jgqpc26","country_code":"SK","type":"facility","lineage":["https://openalex.org/I207624831","https://openalex.org/I4210152232"]},{"id":"https://openalex.org/I44504214","display_name":"Czech Technical University in Prague","ror":"https://ror.org/03kqpb082","country_code":"CZ","type":"education","lineage":["https://openalex.org/I44504214"]}],"countries":["CZ","SK"],"is_corresponding":false,"raw_author_name":"Josef Sivic","raw_affiliation_strings":["Czech Institute of Informatics, Robotics and Cybernetics (CIIRC), Czech Technical University, Jugosl\u00e1vsk\u00fdch partyz\u00e1n\u016f 1580/3, 160 00, Prague, Czech Republic"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Czech Institute of Informatics, Robotics and Cybernetics (CIIRC), Czech Technical University, Jugosl\u00e1vsk\u00fdch partyz\u00e1n\u016f 1580/3, 160 00, Prague, Czech Republic","institution_ids":["https://openalex.org/I4210152232","https://openalex.org/I44504214"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5088461185","display_name":"Tom\u00e1\u0161 Pluskal","orcid":"https://orcid.org/0000-0002-6940-3006"},"institutions":[{"id":"https://openalex.org/I4210145889","display_name":"Czech Academy of Sciences, Institute of Organic Chemistry and Biochemistry","ror":"https://ror.org/04nfjn472","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I202391551","https://openalex.org/I4210145889"]}],"countries":["CZ"],"is_corresponding":true,"raw_author_name":"Tom\u00e1\u0161 Pluskal","raw_affiliation_strings":["Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Flemingovo n\u00e1m\u011bst\u00ed 2, Prague, Czech Republic. tomas.pluskal@uochb.cas.cz","Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Flemingovo n\u00e1m\u011bst\u00ed 2, Prague, Czech Republic"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Flemingovo n\u00e1m\u011bst\u00ed 2, Prague, Czech Republic. tomas.pluskal@uochb.cas.cz","institution_ids":["https://openalex.org/I4210145889"]},{"raw_affiliation_string":"Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Flemingovo n\u00e1m\u011bst\u00ed 2, Prague, Czech Republic","institution_ids":["https://openalex.org/I4210145889"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5088461185"],"corresponding_institution_ids":["https://openalex.org/I4210145889"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":0.8435,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.7517739,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":97,"max":98},"biblio":{"volume":"27","issue":"1","first_page":"10","last_page":"10"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11882","display_name":"Plant biochemistry and biosynthesis","score":0.9764000177383423,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11882","display_name":"Plant biochemistry and biosynthesis","score":0.9764000177383423,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.006000000052154064,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10252","display_name":"Microbial Natural Products and Biosynthesis","score":0.003599999938160181,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/terpene","display_name":"Terpene","score":0.5167999863624573},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.337799996137619},{"id":"https://openalex.org/keywords/oxidation-reduction","display_name":"Oxidation reduction","score":0.3021000027656555}],"concepts":[{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.5307999849319458},{"id":"https://openalex.org/C44937612","wikidata":"https://www.wikidata.org/wiki/Q212364","display_name":"Terpene","level":2,"score":0.5167999863624573},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4900999963283539},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.46630001068115234},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3675999939441681},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.34119999408721924},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.337799996137619},{"id":"https://openalex.org/C21951064","wikidata":"https://www.wikidata.org/wiki/Q899212","display_name":"Combinatorial chemistry","level":1,"score":0.31859999895095825},{"id":"https://openalex.org/C2991733762","wikidata":"https://www.wikidata.org/wiki/Q82682","display_name":"Oxidation reduction","level":2,"score":0.3021000027656555},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.26899999380111694},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.26750001311302185}],"mesh":[{"descriptor_ui":"D013729","descriptor_name":"Terpenes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D013729","descriptor_name":"Terpenes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D013729","descriptor_name":"Terpenes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D013729","descriptor_name":"Terpenes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D013729","descriptor_name":"Terpenes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D013729","descriptor_name":"Terpenes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D019883","descriptor_name":"Alkyl and Aryl Transferases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D019883","descriptor_name":"Alkyl and Aryl Transferases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D019883","descriptor_name":"Alkyl and Aryl Transferases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D019883","descriptor_name":"Alkyl and Aryl Transferases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D019883","descriptor_name":"Alkyl and Aryl Transferases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D019883","descriptor_name":"Alkyl and Aryl Transferases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1186/s12859-025-06341-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-025-06341-8","pdf_url":null,"source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:41361262","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41361262","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:HAL:hal-05549301v1","is_oa":false,"landing_page_url":"https://hal.science/hal-05549301","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, 2025, 27 (1), pp.10. &#x27E8;10.1186/s12859-025-06341-8&#x27E9;","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:doaj.org/article:85fe5e0b5c40486d93dbfc8d61d57119","is_oa":true,"landing_page_url":"https://doaj.org/article/85fe5e0b5c40486d93dbfc8d61d57119","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 27, Iss 1, Pp 1-10 (2025)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:12797696","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12797696/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-025-06341-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-025-06341-8","pdf_url":null,"source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1486885244","display_name":"Federated foundational models for embodied perception","funder_award_id":"101097822","funder_id":"https://openalex.org/F4320338453","funder_display_name":"HORIZON EUROPE European Research Council"},{"id":"https://openalex.org/G1740295352","display_name":null,"funder_award_id":"A2_FCHT_2025_011","funder_id":"https://openalex.org/F4320329550","funder_display_name":"Vysok\u00e1 \u0160kola Chemicko-technologick\u00e1 v Praze"},{"id":"https://openalex.org/G3875659074","display_name":null,"funder_award_id":"21-11563M","funder_id":"https://openalex.org/F4320321006","funder_display_name":"Grantov\u00e1 Agentura \u010cesk\u00e9 Republiky"},{"id":"https://openalex.org/G7114860361","display_name":"Modelling the Biochemistry of Terpene Synthases","funder_award_id":"101168583","funder_id":"https://openalex.org/F4320338438","funder_display_name":"HORIZON EUROPE Marie Sklodowska-Curie Actions"},{"id":"https://openalex.org/G7514438593","display_name":"Decoding the Biochemistry of Terpene Synthases","funder_award_id":"101170268","funder_id":"https://openalex.org/F4320338453","funder_display_name":"HORIZON EUROPE European Research Council"}],"funders":[{"id":"https://openalex.org/F4320321006","display_name":"Grantov\u00e1 Agentura \u010cesk\u00e9 Republiky","ror":"https://ror.org/01pv73b02"},{"id":"https://openalex.org/F4320329550","display_name":"Vysok\u00e1 \u0160kola Chemicko-technologick\u00e1 v Praze","ror":null},{"id":"https://openalex.org/F4320338438","display_name":"HORIZON EUROPE Marie Sklodowska-Curie Actions","ror":null},{"id":"https://openalex.org/F4320338453","display_name":"HORIZON EUROPE European Research Council","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":45,"referenced_works":["https://openalex.org/W1583923863","https://openalex.org/W1779410369","https://openalex.org/W1935434993","https://openalex.org/W1963539007","https://openalex.org/W1989283654","https://openalex.org/W1992665072","https://openalex.org/W2050293154","https://openalex.org/W2052872488","https://openalex.org/W2074105121","https://openalex.org/W2153755298","https://openalex.org/W2159675211","https://openalex.org/W2166724423","https://openalex.org/W2221529903","https://openalex.org/W2288358914","https://openalex.org/W2509940547","https://openalex.org/W2599262804","https://openalex.org/W2750432728","https://openalex.org/W2783153403","https://openalex.org/W2900393265","https://openalex.org/W2953222385","https://openalex.org/W2960167196","https://openalex.org/W2971082441","https://openalex.org/W3000597397","https://openalex.org/W3015516943","https://openalex.org/W3105895642","https://openalex.org/W3111596218","https://openalex.org/W3138847940","https://openalex.org/W3159355684","https://openalex.org/W3177828909","https://openalex.org/W4214556696","https://openalex.org/W4281391087","https://openalex.org/W4309825659","https://openalex.org/W4327550249","https://openalex.org/W4386801812","https://openalex.org/W4389045187","https://openalex.org/W4389900366","https://openalex.org/W4391448932","https://openalex.org/W4391544240","https://openalex.org/W4396721167","https://openalex.org/W4404225840","https://openalex.org/W4404343451","https://openalex.org/W4404458588","https://openalex.org/W4404511365","https://openalex.org/W4406440058","https://openalex.org/W4407434658"],"related_works":[],"abstract_inverted_index":{"BACKGROUND:":[0],"Terpene":[1,107],"synthases":[2],"(TPSs)":[3],"are":[4],"enzymes":[5,139],"that":[6,117],"catalyze":[7],"some":[8],"of":[9,17,28,38,94,106,144,194,212],"the":[10,21,25,31,39,73,102,121,162,191,210],"most":[11],"complex":[12],"reactions":[13,134],"in":[14,42,49,173,209],"nature-the":[15],"cyclizations":[16],"terpenes,":[18],"which":[19],"form":[20],"carbon":[22,40],"backbones":[23],"to":[24,83,91,181],"largest":[26],"group":[27],"natural":[29],"products,":[30],"terpenoids.":[32],"On":[33],"average,":[34],"more":[35,154],"than":[36,155],"half":[37],"atoms":[41],"a":[43,47,92],"terpene":[44],"scaffold":[45],"undergo":[46],"change":[48],"connectivity":[50],"or":[51],"configuration":[52],"during":[53],"these":[54],"enzymatic":[55],"cascades.":[56],"Understanding":[57],"TPS":[58,76,119,195],"reaction":[59,128,147],"mechanisms":[60,148],"remains":[61],"challenging,":[62],"often":[63],"requiring":[64],"intricate":[65],"computational":[66,201],"modeling":[67],"and":[68,78,114,125,168,187,203],"isotopic":[69],"labelling":[70],"studies.":[71],"Moreover,":[72],"relationship":[74],"between":[75],"sequence":[77],"catalytic":[79],"function":[80],"is":[81],"difficult":[82],"decipher,":[84],"while":[85],"data-driven":[86],"approaches":[87],"remain":[88],"limited":[89],"due":[90],"lack":[93],"comprehensive,":[95,188],"high-quality":[96],"data":[97],"sources.":[98],"MAIN:":[99],"We":[100],"introduce":[101],"Mechanisms":[103],"And":[104],"Reactions":[105],"Synthases":[108],"DataBase":[109],"(MARTS-DB)-a":[110],"manually":[111],"curated,":[112],"structured,":[113],"searchable":[115],"database":[116,163],"integrates":[118],"enzymes,":[120],"terpenes":[122],"they":[123],"produce,":[124],"their":[126],"detailed":[127],"mechanisms.":[129],"MARTS-DB":[130,189],"includes":[131],"over":[132],"2850":[133],"catalyzed":[135],"by":[136],"1432":[137],"annotated":[138],"from":[140],"across":[141],"all":[142],"domains":[143],"life,":[145],"with":[146],"mapped":[149],"as":[150,206],"stepwise":[151],"cascades":[152],"for":[153,200],"500":[156],"terpenes.":[157],"Accessible":[158],"at":[159],"https://www.marts-db.org":[160],",":[161],"provides":[164],"advanced":[165],"search":[166],"functionality":[167],"supports":[169],"full":[170],"dataset":[171],"downloads":[172],"machine-readable":[174],"formats.":[175],"It":[176],"also":[177],"encourages":[178],"community":[179],"contributions":[180],"promote":[182],"continuous":[183],"growth.":[184],"CONCLUSION:":[185],"User-friendly":[186],"enables":[190],"systematic":[192],"exploration":[193],"catalysis,":[196],"opening":[197],"new":[198],"avenues":[199],"analysis":[202],"machine":[204],"learning,":[205],"recently":[207],"demonstrated":[208],"prediction":[211],"novel":[213],"TPSs.":[214]},"counts_by_year":[{"year":2026,"cited_by_count":2}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-12-08T00:00:00"}
