{"id":"https://openalex.org/W4415208092","doi":"https://doi.org/10.1186/s12859-025-06272-4","title":"DCMF-PPI: a protein-protein interaction predictor based on dynamic condition and multi-feature fusion","display_name":"DCMF-PPI: a protein-protein interaction predictor based on dynamic condition and multi-feature fusion","publication_year":2025,"publication_date":"2025-10-15","ids":{"openalex":"https://openalex.org/W4415208092","doi":"https://doi.org/10.1186/s12859-025-06272-4","pmid":"https://pubmed.ncbi.nlm.nih.gov/41094395"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-025-06272-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-025-06272-4","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-025-06272-4","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-025-06272-4","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100460976","display_name":"Siqi Chen","orcid":"https://orcid.org/0000-0002-2460-4381"},"institutions":[{"id":"https://openalex.org/I63371133","display_name":"Chongqing Jiaotong University","ror":"https://ror.org/01t001k65","country_code":"CN","type":"education","lineage":["https://openalex.org/I63371133"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Siqi Chen","raw_affiliation_strings":["School of Information Science and Engineering, Chongqing Jiaotong University, Chongqing, 400074, China"],"raw_orcid":"https://orcid.org/0000-0002-2460-4381","affiliations":[{"raw_affiliation_string":"School of Information Science and Engineering, Chongqing Jiaotong University, Chongqing, 400074, China","institution_ids":["https://openalex.org/I63371133"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Anhong Zheng","orcid":null},"institutions":[{"id":"https://openalex.org/I4210129459","display_name":"The Affiliated Yongchuan Hospital of Chongqing Medical University","ror":"https://ror.org/033vnzz93","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210129459"]},{"id":"https://openalex.org/I87780372","display_name":"Chongqing Medical University","ror":"https://ror.org/017z00e58","country_code":"CN","type":"education","lineage":["https://openalex.org/I87780372"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Anhong Zheng","raw_affiliation_strings":["The First Affiliated Hospital of Chongqing Medical University, Chongqing, 400042, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The First Affiliated Hospital of Chongqing Medical University, Chongqing, 400042, China","institution_ids":["https://openalex.org/I4210129459","https://openalex.org/I87780372"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063037526","display_name":"Wenqing Yu","orcid":"https://orcid.org/0000-0002-3046-4485"},"institutions":[{"id":"https://openalex.org/I63371133","display_name":"Chongqing Jiaotong University","ror":"https://ror.org/01t001k65","country_code":"CN","type":"education","lineage":["https://openalex.org/I63371133"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Weichi Yu","raw_affiliation_strings":["School of Information Science and Engineering, Chongqing Jiaotong University, Chongqing, 400074, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Science and Engineering, Chongqing Jiaotong University, Chongqing, 400074, China","institution_ids":["https://openalex.org/I63371133"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100710702","display_name":"Chao Zhan","orcid":"https://orcid.org/0000-0001-5732-8857"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]},{"id":"https://openalex.org/I4210103956","display_name":"Third Affiliated Hospital of Harbin Medical University","ror":"https://ror.org/01f77gp95","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210103956"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Chao Zhan","raw_affiliation_strings":["Cancer Hospital, Harbin Medical University, Harbin, 150001, China. zhanchaohmu@163.com","Cancer Hospital, Harbin Medical University, Harbin, 150001, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cancer Hospital, Harbin Medical University, Harbin, 150001, China. zhanchaohmu@163.com","institution_ids":["https://openalex.org/I156144747","https://openalex.org/I4210103956"]},{"raw_affiliation_string":"Cancer Hospital, Harbin Medical University, Harbin, 150001, China","institution_ids":["https://openalex.org/I156144747","https://openalex.org/I4210103956"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5100710702"],"corresponding_institution_ids":["https://openalex.org/I156144747","https://openalex.org/I4210103956"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.6984,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.74840495,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":98},"biblio":{"volume":"26","issue":"1","first_page":"247","last_page":"247"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.8618000149726868,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.8618000149726868,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.04039999842643738,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.03440000116825104,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.7279000282287598},{"id":"https://openalex.org/keywords/fuse","display_name":"Fuse (electrical)","score":0.6025000214576721},{"id":"https://openalex.org/keywords/fusion","display_name":"Fusion","score":0.5177000164985657},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.4320000112056732},{"id":"https://openalex.org/keywords/downstream","display_name":"Downstream (manufacturing)","score":0.3465000092983246},{"id":"https://openalex.org/keywords/robustness","display_name":"Robustness (evolution)","score":0.30649998784065247}],"concepts":[{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.7279000282287598},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6626999974250793},{"id":"https://openalex.org/C141353440","wikidata":"https://www.wikidata.org/wiki/Q182221","display_name":"Fuse (electrical)","level":2,"score":0.6025000214576721},{"id":"https://openalex.org/C158525013","wikidata":"https://www.wikidata.org/wiki/Q2593739","display_name":"Fusion","level":2,"score":0.5177000164985657},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.45750001072883606},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.4320000112056732},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.41370001435279846},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4043999910354614},{"id":"https://openalex.org/C2776207758","wikidata":"https://www.wikidata.org/wiki/Q5303302","display_name":"Downstream (manufacturing)","level":2,"score":0.3465000092983246},{"id":"https://openalex.org/C63479239","wikidata":"https://www.wikidata.org/wiki/Q7353546","display_name":"Robustness (evolution)","level":3,"score":0.30649998784065247},{"id":"https://openalex.org/C2989108626","wikidata":"https://www.wikidata.org/wiki/Q904407","display_name":"Drug target","level":2,"score":0.3037000000476837},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.27900001406669617},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.27250000834465027},{"id":"https://openalex.org/C33954974","wikidata":"https://www.wikidata.org/wiki/Q486494","display_name":"Sensor fusion","level":2,"score":0.2709999978542328},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.26989999413490295},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.2612000107765198},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.26019999384880066}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1186/s12859-025-06272-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-025-06272-4","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-025-06272-4","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:41094395","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41094395","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:11334851","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12522320","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-025-06272-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-025-06272-4","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-025-06272-4","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1049933001","display_name":null,"funder_award_id":"62222311","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8001421088","display_name":null,"funder_award_id":"61602391","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4415208092.pdf","grobid_xml":"https://content.openalex.org/works/W4415208092.grobid-xml"},"referenced_works_count":56,"referenced_works":["https://openalex.org/W1979937246","https://openalex.org/W1982267716","https://openalex.org/W2008708467","https://openalex.org/W2029476889","https://openalex.org/W2040102227","https://openalex.org/W2044865804","https://openalex.org/W2066962978","https://openalex.org/W2084619201","https://openalex.org/W2128036243","https://openalex.org/W2147209844","https://openalex.org/W2152705149","https://openalex.org/W2158714788","https://openalex.org/W2167869241","https://openalex.org/W2203570694","https://openalex.org/W2287132924","https://openalex.org/W2405065882","https://openalex.org/W2616246685","https://openalex.org/W2790501771","https://openalex.org/W2885583144","https://openalex.org/W2890911678","https://openalex.org/W2955962962","https://openalex.org/W2957436444","https://openalex.org/W2988324282","https://openalex.org/W3095543875","https://openalex.org/W3113652795","https://openalex.org/W3140562424","https://openalex.org/W3162102484","https://openalex.org/W3177500196","https://openalex.org/W3186179742","https://openalex.org/W4281478251","https://openalex.org/W4287751334","https://openalex.org/W4295107433","https://openalex.org/W4296293027","https://openalex.org/W4308834893","https://openalex.org/W4311114767","https://openalex.org/W4317703013","https://openalex.org/W4320933419","https://openalex.org/W4362522229","https://openalex.org/W4386038314","https://openalex.org/W4386554477","https://openalex.org/W4386634093","https://openalex.org/W4387490228","https://openalex.org/W4387824560","https://openalex.org/W4389455254","https://openalex.org/W4390413985","https://openalex.org/W4390659035","https://openalex.org/W4392120722","https://openalex.org/W4392303226","https://openalex.org/W4392638831","https://openalex.org/W4399142722","https://openalex.org/W4399356619","https://openalex.org/W4399411203","https://openalex.org/W4404132621","https://openalex.org/W4406260670","https://openalex.org/W4406739182","https://openalex.org/W4413645799"],"related_works":[],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,125,238],"identification":[2],"of":[3,15,44,68,182,203],"protein-protein":[4],"interaction":[5,211],"(PPI)":[6],"plays":[7],"a":[8,101,191,259],"crucial":[9],"role":[10],"in":[11,21,57,155,210,227,233,251,269],"understanding":[12],"the":[13,41,65,80,180],"mechanisms":[14],"complex":[16],"biological":[17,254],"processes.":[18],"Current":[19],"research":[20,265],"predicting":[22],"PPI":[23,33,47,204,228,264],"has":[24],"shown":[25],"remarkable":[26],"progress":[27],"by":[28],"integrating":[29],"protein":[30,45,70,74,126,135,156,176],"information":[31],"with":[32,140,167],"topology":[34],"structure.":[35],"Nevertheless,":[36],"these":[37,77],"approaches":[38],"frequently":[39],"overlook":[40],"dynamic":[42,107,141,201,243],"nature":[43],"and":[46,55,83,95,112,184,207,236,245,266,272],"structures":[48,206],"during":[49],"cellular":[50],"processes,":[51],"including":[52],"conformational":[53],"alterations":[54],"variations":[56,154],"binding":[58],"affinities":[59],"under":[60],"diverse":[61,175],"environmental":[62],"circumstances.":[63],"Additionally,":[64],"insufficient":[66],"availability":[67],"comprehensive":[69,216],"data":[71],"hinders":[72],"accurate":[73],"representation.":[75],"Consequently,":[76],"shortcomings":[78],"restrict":[79],"model's":[81],"generalizability":[82],"predictive":[84],"precision.":[85],"RESULTS:":[86],"To":[87],"address":[88],"this,":[89],"we":[90],"introduce":[91],"DCMF-PPI":[92,117,223],"(Dynamic":[93],"condition":[94],"multi-feature":[96],"fusion":[97],"framework":[98,104],"for":[99,262],"PPI),":[100],"novel":[102],"hybrid":[103],"that":[105,222],"integrates":[106],"modeling,":[108],"multi-scale":[109,172],"feature":[110],"extraction,":[111],"probabilistic":[113,197],"graph":[114,205],"representation":[115,181],"learning.":[116],"comprises":[118],"three":[119],"core":[120],"modules:":[121],"(1)":[122],"PortT5-GAT":[123],"Module:":[124,160,189],"language":[127],"model":[128],"PortT5":[129],"is":[130],"utilized":[131],"to":[132,150,170,195,241],"extract":[133,171],"residue-level":[134],"features,":[136],"which":[137],"are":[138,147],"integrated":[139],"temporal":[142],"dependencies.":[143],"Graph":[144,193],"attention":[145],"networks":[146,165],"then":[148],"employed":[149],"capture":[151],"context-aware":[152],"structural":[153,185],"interactions;":[157],"(2)":[158],"MPSWA":[159],"Employs":[161],"parallel":[162],"convolutional":[163],"neural":[164],"combined":[166],"wavelet":[168],"transform":[169],"features":[173,247],"from":[174],"residue":[177],"types,":[178],"enhancing":[179],"sequence":[183],"heterogeneity;":[186],"(3)":[187],"VGAE":[188],"Utilizes":[190],"Variational":[192],"Autoencoder":[194],"learn":[196],"latent":[198],"representations,":[199],"facilitating":[200],"modeling":[202,252],"capturing":[208],"uncertainty":[209],"dynamics.":[212],"CONCLUSION:":[213],"We":[214],"conducted":[215],"experiments":[217],"on":[218],"benchmark":[219],"datasets":[220],"demonstrating":[221],"outperforms":[224],"state-of-the-art":[225],"methods":[226],"prediction,":[229],"achieving":[230],"significant":[231],"improvements":[232],"accuracy,":[234],"precision,":[235],"recall.":[237],"framework's":[239],"ability":[240],"fuse":[242],"conditions":[244],"multi-level":[246],"highlights":[248],"its":[249],"effectiveness":[250],"real-world":[253],"complexities,":[255],"positioning":[256],"it":[257],"as":[258],"robust":[260],"tool":[261],"advancing":[263],"downstream":[267],"applications":[268],"systems":[270],"biology":[271],"drug":[273],"discovery.":[274]},"counts_by_year":[{"year":2026,"cited_by_count":1}],"updated_date":"2026-04-29T09:16:38.111599","created_date":"2025-10-16T00:00:00"}
