{"id":"https://openalex.org/W4413116753","doi":"https://doi.org/10.1186/s12859-025-06233-x","title":"FlatProt: 2D visualization eases protein structure comparison","display_name":"FlatProt: 2D visualization eases protein structure comparison","publication_year":2025,"publication_date":"2025-08-13","ids":{"openalex":"https://openalex.org/W4413116753","doi":"https://doi.org/10.1186/s12859-025-06233-x","pmid":"https://pubmed.ncbi.nlm.nih.gov/40804367"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-025-06233-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-025-06233-x","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-025-06233-x","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-025-06233-x","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5002122017","display_name":"Tobias Olenyi","orcid":"https://orcid.org/0000-0002-6315-0458"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Tobias Olenyi","raw_affiliation_strings":["Department of Informatics, Bioinformatics & Computational Biology, School of Computation, Information, and Technology (CIT), TUM (Technical University of Munich), 85748, Garching/Munich, Germany. tobias.olenyi@tum.de"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Informatics, Bioinformatics & Computational Biology, School of Computation, Information, and Technology (CIT), TUM (Technical University of Munich), 85748, Garching/Munich, Germany. tobias.olenyi@tum.de","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5117332055","display_name":"Constantin Carl","orcid":null},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Constantin Carl","raw_affiliation_strings":["Department of Informatics, Bioinformatics & Computational Biology, School of Computation, Information, and Technology (CIT), TUM (Technical University of Munich), 85748, Garching/Munich, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Informatics, Bioinformatics & Computational Biology, School of Computation, Information, and Technology (CIT), TUM (Technical University of Munich), 85748, Garching/Munich, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044754357","display_name":"Tobias Senoner","orcid":"https://orcid.org/0000-0002-7900-5896"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Tobias Senoner","raw_affiliation_strings":["Department of Informatics, Bioinformatics & Computational Biology, School of Computation, Information, and Technology (CIT), TUM (Technical University of Munich), 85748, Garching/Munich, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Informatics, Bioinformatics & Computational Biology, School of Computation, Information, and Technology (CIT), TUM (Technical University of Munich), 85748, Garching/Munich, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088335796","display_name":"Ivan Koludarov","orcid":"https://orcid.org/0000-0002-9073-4758"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Ivan Koludarov","raw_affiliation_strings":["Department of Informatics, Bioinformatics & Computational Biology, School of Computation, Information, and Technology (CIT), TUM (Technical University of Munich), 85748, Garching/Munich, Germany. ivan.koludarov@tum.de"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Informatics, Bioinformatics & Computational Biology, School of Computation, Information, and Technology (CIT), TUM (Technical University of Munich), 85748, Garching/Munich, Germany. ivan.koludarov@tum.de","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5064905883","display_name":"Burkhard Rost","orcid":"https://orcid.org/0000-0003-0179-8424"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Burkhard Rost","raw_affiliation_strings":["Department of Informatics, Bioinformatics & Computational Biology, School of Computation, Information, and Technology (CIT), TUM (Technical University of Munich), 85748, Garching/Munich, Germany","TUM School of Life Sciences Weihenstephan (WZW), Alte Akademie 8, Freising, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Informatics, Bioinformatics & Computational Biology, School of Computation, Information, and Technology (CIT), TUM (Technical University of Munich), 85748, Garching/Munich, Germany","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"TUM School of Life Sciences Weihenstephan (WZW), Alte Akademie 8, Freising, Germany","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I62916508"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":1.0916,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.77894994,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":97,"max":98},"biblio":{"volume":"26","issue":"1","first_page":"210","last_page":"210"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.31119999289512634,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.31119999289512634,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.20919999480247498,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.08540000021457672,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6600140333175659},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5715562105178833},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5261630415916443},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.5008134841918945},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.34317684173583984},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3047262132167816},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.2747947573661804},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.16680672764778137},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.08664298057556152},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.06971049308776855}],"concepts":[{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6600140333175659},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5715562105178833},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5261630415916443},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.5008134841918945},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.34317684173583984},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3047262132167816},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2747947573661804},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.16680672764778137},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.08664298057556152},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.06971049308776855}],"mesh":[{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-025-06233-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-025-06233-x","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-025-06233-x","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40804367","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40804367","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:232e3b336af0428f9d1070a4f7ac4da1","is_oa":true,"landing_page_url":"https://doaj.org/article/232e3b336af0428f9d1070a4f7ac4da1","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 26, Iss 1, Pp 1-13 (2025)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:12344939","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12344939","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-025-06233-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-025-06233-x","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-025-06233-x","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320323383","display_name":"Technische Universit\u00e4t M\u00fcnchen","ror":"https://ror.org/02kkvpp62"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4413116753.pdf","grobid_xml":"https://content.openalex.org/works/W4413116753.grobid-xml"},"referenced_works_count":37,"referenced_works":["https://openalex.org/W2009155849","https://openalex.org/W2028231353","https://openalex.org/W2035074554","https://openalex.org/W2043359500","https://openalex.org/W2069678962","https://openalex.org/W2130479394","https://openalex.org/W2132785801","https://openalex.org/W2134451321","https://openalex.org/W2150658204","https://openalex.org/W2154139219","https://openalex.org/W2161072217","https://openalex.org/W2161151688","https://openalex.org/W2168332319","https://openalex.org/W2604743104","https://openalex.org/W2774947757","https://openalex.org/W2975185100","https://openalex.org/W3177828909","https://openalex.org/W3182282819","https://openalex.org/W3201212396","https://openalex.org/W3215918380","https://openalex.org/W4200558331","https://openalex.org/W4213199337","https://openalex.org/W4281790889","https://openalex.org/W4282931350","https://openalex.org/W4309506674","https://openalex.org/W4323338513","https://openalex.org/W4375858802","https://openalex.org/W4385768591","https://openalex.org/W4386215750","https://openalex.org/W4387164156","https://openalex.org/W4388464011","https://openalex.org/W4388633862","https://openalex.org/W4391827434","https://openalex.org/W4396730528","https://openalex.org/W4404531739","https://openalex.org/W6631828510","https://openalex.org/W7073629320"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2046158694","https://openalex.org/W2788277189","https://openalex.org/W2013243191","https://openalex.org/W1971568933"],"abstract_inverted_index":{"BACKGROUND:":[0],"Understanding":[1],"and":[2,14,91,105,149,162],"comparing":[3,23],"three-dimensional":[4],"(3D)":[5],"structures":[6,25,73,138,164],"of":[7,44,70,109,121,136],"proteins":[8,114],"can":[9],"advance":[10],"bioinformatics,":[11],"molecular":[12],"biology,":[13],"drug":[15],"discovery.":[16],"While":[17],"3D":[18,63,147],"models":[19],"offer":[20],"detailed":[21],"insights,":[22],"multiple":[24],"simultaneously":[26],"remains":[27],"challenging,":[28],"especially":[29],"on":[30,118],"two-dimensional":[31],"(2D)":[32],"displays.":[33],"Existing":[34],"2D":[35,68],"visualization":[36,69],"tools":[37,148],"lack":[38],"standardized":[39,67],"approaches":[40],"for":[41,95,165],"pipelined":[42],"inspection":[43,135],"large":[45,75],"protein":[46,72,97,137],"sets,":[47],"limiting":[48],"their":[49],"utility":[50],"in":[51],"large-scale":[52],"pre-filtering.":[53],"RESULTS:":[54],"We":[55],"introduce":[56],"FlatProt,":[57],"a":[58,119],"tool":[59],"designed":[60],"to":[61,156],"complement":[62],"viewers":[64],"by":[65],"enabling":[66],"individual":[71],"or":[74,84],"sets":[76],"thereof.":[77],"By":[78,141],"including":[79],"Foldseek-based":[80],"family":[81],"rotation":[82],"alignment":[83],"an":[85],"inertia-based":[86],"fallback,":[87],"FlatProt":[88,112,125],"creates":[89],"consistent":[90],"scalable":[92],"visual":[93,107,151],"representations":[94],"user-defined":[96],"structures.":[98,111],"It":[99],"supports":[100],"domain-aware":[101],"decomposition,":[102],"family-level":[103],"overlays,":[104],"lightweight":[106],"abstraction":[108],"secondary":[110],"processes":[113],"efficiently,":[115],"as":[116],"showcased":[117],"subset":[120],"the":[122,143],"human-proteome.":[123],"CONCLUSION:":[124],"provides":[126],"clear,":[127],"consistent,":[128],"user-friendly":[129],"visualizations":[130],"that":[131],"support":[132],"rapid,":[133],"comparative":[134],"at":[139],"scale.":[140],"bridging":[142],"gap":[144],"between":[145],"interactive":[146],"static":[150],"summaries,":[152],"it":[153],"enables":[154],"users":[155],"explore":[157],"conserved":[158],"features,":[159],"detect":[160],"outliers,":[161],"prioritize":[163],"further":[166],"analysis.":[167],"AVAILABILITY:":[168],"GitHub":[169],"(":[170,174],"https://github.com/t03i/FlatProt":[171],");":[172],"Zenodo":[173],"https://doi.org/10.5281/zenodo.15697296":[175],").":[176]},"counts_by_year":[{"year":2026,"cited_by_count":2}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
