{"id":"https://openalex.org/W4413969864","doi":"https://doi.org/10.1186/s12859-025-06204-2","title":"SANS ambages: phylogenomics with abundance-filter, multi-threading, and bootstrapping on amino-acid or genomic sequences","display_name":"SANS ambages: phylogenomics with abundance-filter, multi-threading, and bootstrapping on amino-acid or genomic sequences","publication_year":2025,"publication_date":"2025-09-02","ids":{"openalex":"https://openalex.org/W4413969864","doi":"https://doi.org/10.1186/s12859-025-06204-2","pmid":"https://pubmed.ncbi.nlm.nih.gov/40898043"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-025-06204-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-025-06204-2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-025-06204-2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-025-06204-2","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5116792063","display_name":"Fabian Kolesch","orcid":null},"institutions":[{"id":"https://openalex.org/I20121455","display_name":"Bielefeld University","ror":"https://ror.org/02hpadn98","country_code":"DE","type":"education","lineage":["https://openalex.org/I20121455"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Fabian Kolesch","raw_affiliation_strings":["Genome Informatics, Faculty of Technology and Center for Biotechnology, Bielefeld University, 33615, Bielefeld, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Genome Informatics, Faculty of Technology and Center for Biotechnology, Bielefeld University, 33615, Bielefeld, Germany","institution_ids":["https://openalex.org/I20121455"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Marco Sohn","orcid":null},"institutions":[{"id":"https://openalex.org/I20121455","display_name":"Bielefeld University","ror":"https://ror.org/02hpadn98","country_code":"DE","type":"education","lineage":["https://openalex.org/I20121455"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Marco Sohn","raw_affiliation_strings":["Genome Informatics, Faculty of Technology and Center for Biotechnology, Bielefeld University, 33615, Bielefeld, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Genome Informatics, Faculty of Technology and Center for Biotechnology, Bielefeld University, 33615, Bielefeld, Germany","institution_ids":["https://openalex.org/I20121455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009019686","display_name":"Andreas Rempel","orcid":"https://orcid.org/0000-0003-0609-5621"},"institutions":[{"id":"https://openalex.org/I20121455","display_name":"Bielefeld University","ror":"https://ror.org/02hpadn98","country_code":"DE","type":"education","lineage":["https://openalex.org/I20121455"]},{"id":"https://openalex.org/I203082224","display_name":"Hochschule Bielefeld","ror":"https://ror.org/00edvg943","country_code":"DE","type":"education","lineage":["https://openalex.org/I203082224"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Andreas Rempel","raw_affiliation_strings":["Bielefeld Institute for Bioinformatics Infrastructure (BIBI), Bielefeld University, 33615, Bielefeld, Germany","Genome Informatics, Faculty of Technology and Center for Biotechnology, Bielefeld University, 33615, Bielefeld, Germany","Graduate School \"Digital Infrastructure for the Life Sciences\" (DILS), Bielefeld University, 33615, Bielefeld, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bielefeld Institute for Bioinformatics Infrastructure (BIBI), Bielefeld University, 33615, Bielefeld, Germany","institution_ids":["https://openalex.org/I20121455"]},{"raw_affiliation_string":"Genome Informatics, Faculty of Technology and Center for Biotechnology, Bielefeld University, 33615, Bielefeld, Germany","institution_ids":["https://openalex.org/I20121455"]},{"raw_affiliation_string":"Graduate School \"Digital Infrastructure for the Life Sciences\" (DILS), Bielefeld University, 33615, Bielefeld, Germany","institution_ids":["https://openalex.org/I20121455","https://openalex.org/I203082224"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5099541080","display_name":"P Von Hippel","orcid":null},"institutions":[{"id":"https://openalex.org/I20121455","display_name":"Bielefeld University","ror":"https://ror.org/02hpadn98","country_code":"DE","type":"education","lineage":["https://openalex.org/I20121455"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Pia Hippel","raw_affiliation_strings":["Genome Informatics, Faculty of Technology and Center for Biotechnology, Bielefeld University, 33615, Bielefeld, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Genome Informatics, Faculty of Technology and Center for Biotechnology, Bielefeld University, 33615, Bielefeld, Germany","institution_ids":["https://openalex.org/I20121455"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5062211046","display_name":"Roland Wittler","orcid":"https://orcid.org/0000-0002-2249-9880"},"institutions":[{"id":"https://openalex.org/I20121455","display_name":"Bielefeld University","ror":"https://ror.org/02hpadn98","country_code":"DE","type":"education","lineage":["https://openalex.org/I20121455"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Roland Wittler","raw_affiliation_strings":["Bielefeld Institute for Bioinformatics Infrastructure (BIBI), Bielefeld University, 33615, Bielefeld, Germany. roland.wittler@uni-bielefeld.de","Genome Informatics, Faculty of Technology and Center for Biotechnology, Bielefeld University, 33615, Bielefeld, Germany. roland.wittler@uni-bielefeld.de"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bielefeld Institute for Bioinformatics Infrastructure (BIBI), Bielefeld University, 33615, Bielefeld, Germany. roland.wittler@uni-bielefeld.de","institution_ids":["https://openalex.org/I20121455"]},{"raw_affiliation_string":"Genome Informatics, Faculty of Technology and Center for Biotechnology, Bielefeld University, 33615, Bielefeld, Germany. roland.wittler@uni-bielefeld.de","institution_ids":["https://openalex.org/I20121455"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5062211046"],"corresponding_institution_ids":["https://openalex.org/I20121455"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":0.409,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.61622424,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":97},"biblio":{"volume":"26","issue":"1","first_page":"227","last_page":"227"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.8747000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.8747000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.07559999823570251,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.005499999970197678,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6783435940742493},{"id":"https://openalex.org/keywords/bootstrapping","display_name":"Bootstrapping (finance)","score":0.6585941910743713},{"id":"https://openalex.org/keywords/phylogenomics","display_name":"Phylogenomics","score":0.6199210286140442},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.6167374849319458},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5461231470108032},{"id":"https://openalex.org/keywords/filter","display_name":"Filter (signal processing)","score":0.47910645604133606},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.46903714537620544},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.4499090015888214},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.42646270990371704},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3595268726348877},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3373975455760956},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3282846212387085},{"id":"https://openalex.org/keywords/phylogenetics","display_name":"Phylogenetics","score":0.24499982595443726},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.16838207840919495},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.13162878155708313},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.09585705399513245}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6783435940742493},{"id":"https://openalex.org/C207609745","wikidata":"https://www.wikidata.org/wiki/Q4944086","display_name":"Bootstrapping (finance)","level":2,"score":0.6585941910743713},{"id":"https://openalex.org/C70343354","wikidata":"https://www.wikidata.org/wiki/Q3381973","display_name":"Phylogenomics","level":5,"score":0.6199210286140442},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.6167374849319458},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5461231470108032},{"id":"https://openalex.org/C106131492","wikidata":"https://www.wikidata.org/wiki/Q3072260","display_name":"Filter (signal processing)","level":2,"score":0.47910645604133606},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.46903714537620544},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.4499090015888214},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.42646270990371704},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3595268726348877},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3373975455760956},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3282846212387085},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.24499982595443726},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.16838207840919495},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.13162878155708313},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.09585705399513245},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.0},{"id":"https://openalex.org/C106159729","wikidata":"https://www.wikidata.org/wiki/Q2294553","display_name":"Financial economics","level":1,"score":0.0},{"id":"https://openalex.org/C44465124","wikidata":"https://www.wikidata.org/wiki/Q713623","display_name":"Clade","level":4,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1186/s12859-025-06204-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-025-06204-2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-025-06204-2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40898043","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40898043","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:b50772501c994d9c91dd0df99bb8fe87","is_oa":true,"landing_page_url":"https://doaj.org/article/b50772501c994d9c91dd0df99bb8fe87","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 26, Iss 1, Pp 1-8 (2025)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:11213815","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12403963","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:12403963","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12403963/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-025-06204-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-025-06204-2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-025-06204-2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"},{"id":"https://openalex.org/F4320323389","display_name":"Universit\u00e4t Bielefeld","ror":"https://ror.org/02hpadn98"},{"id":"https://openalex.org/F4320330124","display_name":"German Network for Bioinformatics Infrastructure","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4413969864.pdf","grobid_xml":"https://content.openalex.org/works/W4413969864.grobid-xml"},"referenced_works_count":12,"referenced_works":["https://openalex.org/W2055298722","https://openalex.org/W2143485490","https://openalex.org/W2527122211","https://openalex.org/W2804287730","https://openalex.org/W2888572754","https://openalex.org/W2950150251","https://openalex.org/W2979069693","https://openalex.org/W2991805664","https://openalex.org/W2994645871","https://openalex.org/W3168206594","https://openalex.org/W4221113039","https://openalex.org/W4226101760"],"related_works":["https://openalex.org/W2380915035","https://openalex.org/W1534274833","https://openalex.org/W2298047311","https://openalex.org/W3117246195","https://openalex.org/W156620619","https://openalex.org/W2098233217","https://openalex.org/W2308248996","https://openalex.org/W1997697005","https://openalex.org/W2914363205","https://openalex.org/W2616249226"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,85,125],"increasing":[2],"amount":[3],"of":[4,19,40,78,109,114,170],"available":[5,95],"genome":[6,31],"sequence":[7,44],"data":[8,92],"enables":[9,157],"large-scale":[10],"comparative":[11],"studies.":[12],"A":[13],"common":[14],"task":[15,23],"is":[16,50],"the":[17,37,107,110,168,171],"inference":[18],"phylogenies-":[20],"a":[21,63,69,117,149],"challenging":[22],"if":[24],"close":[25],"reference":[26],"sequences":[27,32,146],"are":[28,33,93],"not":[29,128],"available,":[30],"incompletely":[34],"assembled,":[35],"or":[36],"high":[38],"number":[39],"genomes":[41],"precludes":[42],"multiple":[43],"alignment":[45],"in":[46],"reasonable":[47],"time.":[48],"SANS":[49,66,101],"an":[51],"alignment-free,":[52],"whole-genome":[53],"based":[54],"approach":[55],"for":[56,96,151],"phylogeny":[57],"estimation.":[58],"RESULTS:":[59],"Here":[60],"we":[61],"present":[62],"new":[64,126,158],"implementation":[65],"ambages":[67],"with":[68,116],"significantly":[70],"increased":[71],"application":[72,159],"spectrum.":[73],"It":[74],"offers":[75],"additional":[76],"types":[77],"input":[79],"data,":[80],"parallelized":[81],"processing,":[82],"and":[83,90,147,162,166],"bootstrapping.":[84],"source":[86],"code":[87],"(C++),":[88],"documentation,":[89],"example":[91],"freely":[94],"download":[97],"at:":[98],"https://github.com/gi-bielefeld/sans":[99],".":[100,123],"can":[102],"also":[103,142,156],"be":[104],"launched":[105],"via":[106],"web-interface":[108],"CloWM":[111],"platform-":[112],"free":[113],"charge,":[115],"standard":[118],"Life":[119],"Science":[120],"account:":[121],"https://clowm.bi.denbi.de/workflows/0194b78f-9696-7402-a2b8-858508733618/":[122],"CONCLUSIONS:":[124],"version":[127],"only":[129],"shortens":[130],"processing":[131],"time":[132],"on":[133],"large":[134],"datasets":[135],"immensely":[136],"by":[137],"parallelization.":[138],"Being":[139],"able":[140],"to":[141],"process":[143],"amino":[144],"acid":[145],"offering":[148],"filter":[150],"low-abundant":[152],"DNA":[153],"read":[154],"segments":[155],"cases.":[160],"Bootstrapping":[161],"integrated":[163],"visualization":[164],"ease":[165],"enrich":[167],"interpretation":[169],"resulting":[172],"phylogenies.":[173]},"counts_by_year":[{"year":2026,"cited_by_count":1}],"updated_date":"2026-07-29T09:40:50.615796","created_date":"2025-10-10T00:00:00"}
